Wall clock time and date at job start Wed Apr 1 2020 03:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32156 * 120.54279 * 2 1 4 4 C 1.31852 * 120.97207 * 179.97438 * 3 2 1 5 5 N 1.31885 * 122.09468 * 0.02562 * 4 3 2 6 6 C 1.32133 * 120.96850 * 359.69351 * 5 4 3 7 7 C 1.39937 * 120.53411 * 179.97438 * 2 1 3 8 8 C 1.47831 * 120.94174 * 0.03273 * 7 2 1 9 9 O 1.21554 * 119.99596 * 305.06723 * 8 7 2 10 10 N 1.34770 * 120.00452 * 125.06669 * 8 7 2 11 11 C 1.44572 * 118.79070 * 354.36842 * 10 8 7 12 12 C 1.54689 * 109.63012 * 270.64200 * 11 10 8 13 13 C 1.47012 * 110.64210 * 288.15215 * 12 11 10 14 14 C 1.52950 * 114.30717 * 62.90789 * 13 12 11 15 15 C 1.50556 * 109.11056 * 276.10653 * 14 13 12 16 16 C 1.53947 * 111.50646 * 214.30940 * 15 14 13 17 17 C 1.54149 * 104.89688 * 98.52544 * 16 15 14 18 18 N 1.47521 * 107.06326 * 358.24114 * 17 16 15 19 19 C 1.36938 * 126.98583 * 205.32530 * 18 17 16 20 20 H 1.08003 * 119.99885 * 179.97438 * 19 18 17 21 21 C 1.38806 * 120.00097 * 359.97438 * 19 18 17 22 22 N 1.31620 * 120.00058 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00343 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46892 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47446 * 119.99800 * 23 21 19 26 26 H 1.48499 * 109.47283 * 240.00012 * 23 21 19 27 27 C 1.48221 * 106.02541 * 25.30532 * 18 17 16 28 28 C 1.47595 * 118.78847 * 174.38402 * 10 8 7 29 29 H 1.09000 * 109.46959 * 274.97723 * 1 2 3 30 30 H 1.09001 * 109.47145 * 34.97746 * 1 2 3 31 31 H 1.09005 * 109.47201 * 154.97311 * 1 2 3 32 32 H 1.07999 * 118.95079 * 179.97438 * 4 3 2 33 33 H 1.07993 * 120.54500 * 180.31674 * 6 5 4 34 34 H 1.09007 * 109.44524 * 30.68085 * 11 10 8 35 35 H 1.08994 * 109.45295 * 150.59034 * 11 10 8 36 36 H 1.09005 * 109.24340 * 48.45056 * 12 11 10 37 37 H 1.08999 * 109.24419 * 167.84827 * 12 11 10 38 38 H 1.09001 * 108.51792 * 184.14080 * 13 12 11 39 39 H 1.09006 * 108.51520 * 301.80117 * 13 12 11 40 40 H 1.09001 * 109.52036 * 156.22301 * 14 13 12 41 41 H 1.08995 * 109.54078 * 36.00231 * 14 13 12 42 42 H 1.09006 * 110.35418 * 339.66965 * 16 15 14 43 43 H 1.08999 * 110.36110 * 217.38164 * 16 15 14 44 44 H 1.08993 * 109.91299 * 117.59588 * 17 16 15 45 45 H 1.09002 * 109.91519 * 238.88821 * 17 16 15 46 46 H 0.97002 * 120.00164 * 180.02562 * 22 21 19 47 47 H 1.08995 * 110.66858 * 79.86010 * 27 18 17 48 48 H 1.09001 * 110.66581 * 202.98572 * 27 18 17 49 49 H 1.08996 * 108.99391 * 17.44393 * 28 10 8 50 50 H 1.09005 * 108.98935 * 258.70296 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1382 0.0000 4 6 3.4971 1.1481 0.0005 5 7 4.2062 0.0361 0.0005 6 6 3.6164 -1.1464 0.0061 7 6 2.2180 -1.2053 0.0005 8 6 1.5120 -2.5042 0.0004 9 8 0.6900 -2.7492 0.8617 10 7 1.7798 -3.4167 -0.9546 11 6 2.6687 -3.0532 -2.0352 12 6 1.8526 -2.4303 -3.1923 13 6 1.0620 -3.4601 -3.8819 14 6 0.0073 -4.1366 -3.0047 15 6 0.6552 -5.2493 -2.2244 16 6 -0.3080 -6.4334 -2.0242 17 6 0.0798 -7.4488 -3.1173 18 7 1.1674 -6.8405 -3.9069 19 6 1.4955 -7.1173 -5.2073 20 1 2.3191 -6.6009 -5.6780 21 6 0.7697 -8.0614 -5.9204 22 7 -0.2343 -8.6902 -5.3470 23 14 1.2177 -8.4394 -7.6940 24 1 2.3754 -7.6032 -8.1012 25 1 1.5754 -9.8753 -7.8190 26 1 0.0582 -8.1399 -8.5722 27 6 1.8323 -5.8687 -3.0068 28 6 1.1545 -4.7502 -0.8588 29 1 -0.3633 0.0892 1.0238 30 1 -0.3633 0.8420 -0.5891 31 1 -0.3634 -0.9312 -0.4348 32 1 4.0128 2.0970 0.0001 33 1 4.2038 -2.0526 0.0112 34 1 3.3996 -2.3287 -1.6758 35 1 3.1864 -3.9427 -2.3942 36 1 1.1814 -1.6712 -2.7905 37 1 2.5351 -1.9651 -3.9035 38 1 0.5603 -2.9993 -4.7328 39 1 1.7417 -4.2261 -4.2554 40 1 -0.7827 -4.5453 -3.6347 41 1 -0.4161 -3.4064 -2.3151 42 1 -1.3402 -6.1091 -2.1569 43 1 -0.1713 -6.8705 -1.0351 44 1 0.4271 -8.3742 -2.6580 45 1 -0.7781 -7.6489 -3.7593 46 1 -0.7414 -9.3502 -5.8452 47 1 2.5184 -6.3780 -2.3302 48 1 2.3549 -5.1055 -3.5835 49 1 0.3112 -4.6979 -0.1703 50 1 1.8860 -5.4577 -0.4684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045917139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:38 Heat of formation + Delta-G solvation = 65.678990 kcal Electronic energy + Delta-G solvation = -32119.682578 eV Core-core repulsion = 28148.713993 eV Total energy + Delta-G solvation = -3970.968585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.77070 -40.41383 -38.63908 -36.19196 -34.78274 -33.72789 -33.34890 -32.68357 -30.61684 -29.12114 -28.74952 -27.31491 -26.03875 -25.15280 -24.99530 -23.34244 -22.96188 -21.66855 -20.01116 -19.54623 -18.31469 -18.12373 -17.24109 -17.15341 -17.04204 -16.55749 -15.48402 -15.32305 -15.12203 -14.75887 -14.41320 -14.02193 -13.92487 -13.68248 -13.44871 -13.35401 -13.18823 -13.15373 -13.01580 -12.64125 -12.46726 -12.06680 -11.86709 -11.80622 -11.77459 -11.45478 -11.11084 -10.90996 -10.87687 -10.84759 -10.50871 -10.26376 -10.16402 -10.11419 -9.77861 -9.74229 -9.71698 -9.65289 -9.60264 -9.28616 -8.70469 -8.64118 -6.89353 -5.69074 -3.09831 0.25956 0.65200 2.38182 2.83368 3.36234 3.36556 3.41593 3.44261 3.65408 3.75418 4.00169 4.17647 4.44804 4.60362 4.76151 4.84790 4.92912 4.95466 5.10276 5.10992 5.21847 5.30060 5.39746 5.44034 5.48121 5.51284 5.63209 5.65196 5.67380 5.77853 5.86740 5.95013 5.98689 6.00490 6.10110 6.20336 6.23789 6.34667 6.37601 6.45937 6.52755 6.62005 6.65980 6.83223 6.91233 6.96067 7.24006 7.48569 7.55548 7.65711 7.81622 7.93723 8.32056 9.16039 9.77613 10.47628 11.35654 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.003026 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.295270 B = 9252.094236 C = 9780.261134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.222 3.778 3 N -0.521 5.521 4 C 0.309 3.691 5 N -0.524 5.524 6 C 0.182 3.818 7 C -0.228 4.228 8 C 0.565 3.435 9 O -0.528 6.528 10 N -0.586 5.586 11 C 0.094 3.906 12 C -0.126 4.126 13 C -0.145 4.145 14 C -0.081 4.081 15 C -0.082 4.082 16 C -0.129 4.129 17 C 0.147 3.853 18 N -0.596 5.596 19 C -0.218 4.218 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.120 3.880 28 C 0.125 3.875 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.200 0.800 33 H 0.174 0.826 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.009 0.991 45 H 0.104 0.896 46 H 0.251 0.749 47 H 0.018 0.982 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 16.714 9.905 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.076 3.924 3 N -0.235 5.235 4 C 0.022 3.978 5 N -0.238 5.238 6 C 0.016 3.984 7 C -0.236 4.236 8 C 0.350 3.650 9 O -0.405 6.405 10 N -0.317 5.317 11 C -0.029 4.029 12 C -0.165 4.165 13 C -0.181 4.181 14 C -0.118 4.118 15 C -0.085 4.085 16 C -0.168 4.168 17 C 0.022 3.978 18 N -0.320 5.320 19 C -0.347 4.347 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.006 4.006 28 C 0.003 3.997 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.217 0.783 33 H 0.191 0.809 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.027 0.973 45 H 0.122 0.878 46 H 0.062 0.938 47 H 0.036 0.964 48 H 0.088 0.912 49 H 0.108 0.892 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.845 17.271 10.119 20.595 hybrid contribution -0.035 -1.057 -0.926 1.405 sum 4.810 16.214 9.194 19.250 Atomic orbital electron populations 1.20871 0.87064 1.04252 1.04462 1.21818 0.97787 0.86575 0.86223 1.68344 1.10330 1.29582 1.15288 1.25159 0.86702 0.97245 0.88658 1.68468 1.41323 0.98882 1.15088 1.23418 0.90534 0.96744 0.87728 1.21658 0.96663 0.96312 1.08925 1.17895 0.82039 0.82851 0.82208 1.90799 1.33338 1.78593 1.37782 1.47643 1.46588 1.13779 1.23668 1.21948 0.92092 1.01366 0.87532 1.21167 0.99199 0.98662 0.97437 1.20847 0.99438 0.99063 0.98767 1.20805 0.97743 0.95760 0.97515 1.21450 0.98112 0.95631 0.93284 1.22717 0.97886 0.96224 0.99989 1.21685 0.94402 0.91014 0.90744 1.44767 1.33935 1.44444 1.08875 1.19057 1.12014 1.17830 0.85756 0.90480 1.24762 0.98377 0.99035 0.98426 1.69787 1.22220 1.29445 1.35349 0.86061 0.77468 0.77795 0.84536 1.20575 1.21824 1.21813 1.22417 0.93031 0.92516 0.92631 1.22156 0.98234 0.80763 0.98508 0.88780 0.89619 0.89832 0.78309 0.80858 0.90924 0.88861 0.92815 0.91247 0.92786 0.88427 0.91231 0.93330 0.92233 0.92854 0.97304 0.87818 0.93808 0.96402 0.91184 0.89247 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.58 36.01 0.34 -0.73 16 2 C 0.22 2.46 6.86 -81.82 -0.56 1.90 16 3 N -0.52 -5.53 10.36 -10.48 -0.11 -5.63 16 4 C 0.31 2.82 12.27 -92.03 -1.13 1.69 16 5 N -0.52 -5.22 10.42 -14.24 -0.15 -5.37 16 6 C 0.18 1.79 8.83 -16.77 -0.15 1.64 16 7 C -0.23 -2.56 4.90 -104.69 -0.51 -3.07 16 8 C 0.56 7.29 6.09 -12.34 -0.08 7.22 16 9 O -0.53 -8.32 15.43 5.32 0.08 -8.24 16 10 N -0.59 -7.20 2.30 -173.92 -0.40 -7.60 16 11 C 0.09 1.02 5.15 -4.18 -0.02 1.00 16 12 C -0.13 -1.45 5.71 -28.71 -0.16 -1.62 16 13 C -0.14 -2.07 5.02 -29.63 -0.15 -2.22 16 14 C -0.08 -1.26 4.89 -27.98 -0.14 -1.40 16 15 C -0.08 -1.32 0.57 -154.17 -0.09 -1.41 16 16 C -0.13 -2.32 5.91 -25.64 -0.15 -2.47 16 17 C 0.15 3.39 6.01 -2.88 -0.02 3.38 16 18 N -0.60 -14.07 3.36 -169.50 -0.57 -14.64 16 19 C -0.22 -5.71 10.37 -15.06 -0.16 -5.87 16 20 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.07 10.21 55.49 0.57 -25.50 16 23 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.12 2.20 4.52 -2.40 -0.01 2.19 16 28 C 0.12 1.74 4.83 -3.07 -0.01 1.72 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.91 6.72 -51.93 -0.35 0.56 16 32 H 0.20 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.17 1.35 7.49 -52.49 -0.39 0.95 16 34 H 0.07 0.67 4.26 -51.93 -0.22 0.44 16 35 H 0.09 1.04 5.78 -51.93 -0.30 0.74 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.60 4.42 -51.93 -0.23 1.37 16 40 H 0.07 1.25 7.69 -51.93 -0.40 0.86 16 41 H 0.05 0.73 7.58 -51.93 -0.39 0.33 16 42 H 0.06 1.04 7.71 -51.93 -0.40 0.64 16 43 H 0.05 0.87 7.78 -51.93 -0.40 0.47 16 44 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.10 2.74 5.87 -51.93 -0.30 2.43 16 46 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.02 0.34 7.65 -51.93 -0.40 -0.06 16 48 H 0.07 1.21 3.45 -51.93 -0.18 1.03 16 49 H 0.09 1.32 6.83 -51.93 -0.35 0.97 16 50 H 0.07 0.91 7.64 -51.93 -0.40 0.51 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -30.67 373.86 -10.28 -40.95 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.23 Total: 2.42 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -3.09 Total: 1.58 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.66 Total: -58.75 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.67 -10.28 -40.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045917139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.629 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds