Wall clock time and date at job start Wed Apr 1 2020 03:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38802 * 120.42625 * 2 1 4 4 C 1.39494 * 118.26248 * 179.78779 * 3 2 1 5 5 C 1.48455 * 120.54924 * 180.23919 * 4 3 2 6 6 O 1.21474 * 120.00293 * 356.13270 * 5 4 3 7 7 N 1.34782 * 120.00153 * 176.13394 * 5 4 3 8 8 C 1.47559 * 118.63604 * 177.97815 * 7 5 4 9 9 C 1.54331 * 111.96518 * 137.72416 * 8 7 5 10 10 C 1.50871 * 110.31648 * 319.66697 * 9 8 7 11 11 C 1.52620 * 109.37505 * 91.75563 * 10 9 8 12 12 C 1.47082 * 114.26404 * 275.25789 * 11 10 9 13 13 C 1.54249 * 112.34580 * 301.70564 * 12 11 10 14 14 C 1.54397 * 104.95210 * 237.64504 * 13 12 11 15 15 N 1.48148 * 104.61400 * 23.86903 * 14 13 12 16 16 C 1.36940 * 127.83198 * 140.41732 * 15 14 13 17 17 H 1.07990 * 120.00182 * 339.38726 * 16 15 14 18 18 C 1.38812 * 119.99725 * 159.38702 * 16 15 14 19 19 N 1.31621 * 120.00233 * 353.17648 * 18 16 15 20 20 Si 1.86803 * 119.99686 * 173.17235 * 18 16 15 21 21 H 1.48500 * 109.47145 * 60.00268 * 20 18 16 22 22 H 1.48506 * 109.46704 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47201 * 300.00132 * 20 18 16 24 24 C 1.48150 * 104.33082 * 320.43624 * 15 14 13 25 25 C 1.44593 * 118.63137 * 358.24244 * 7 5 4 26 26 N 1.33103 * 118.90144 * 0.48478 * 4 3 2 27 27 C 1.31554 * 120.73548 * 359.75266 * 26 4 3 28 28 N 1.31907 * 121.91946 * 0.02562 * 27 26 4 29 29 H 1.08992 * 109.46921 * 269.71853 * 1 2 3 30 30 H 1.09006 * 109.46569 * 149.71863 * 1 2 3 31 31 H 1.09000 * 109.47191 * 29.72503 * 1 2 3 32 32 H 1.07998 * 120.86686 * 0.02562 * 3 2 1 33 33 H 1.08994 * 108.94215 * 258.53955 * 8 7 5 34 34 H 1.08996 * 108.94291 * 17.15423 * 8 7 5 35 35 H 1.09000 * 109.35932 * 199.35940 * 9 8 7 36 36 H 1.09002 * 109.20266 * 79.87068 * 9 8 7 37 37 H 1.09002 * 109.49020 * 331.78930 * 10 9 8 38 38 H 1.09001 * 109.49130 * 211.72846 * 10 9 8 39 39 H 1.08999 * 108.52208 * 154.01455 * 11 10 9 40 40 H 1.09003 * 108.51929 * 36.49647 * 11 10 9 41 41 H 1.09004 * 110.34879 * 356.50912 * 13 12 11 42 42 H 1.09004 * 110.34624 * 118.77239 * 13 12 11 43 43 H 1.08997 * 110.40877 * 142.65344 * 14 13 12 44 44 H 1.09001 * 110.40616 * 265.08591 * 14 13 12 45 45 H 0.97001 * 119.99983 * 179.97438 * 19 18 16 46 46 H 1.09004 * 110.40917 * 280.76244 * 24 15 14 47 47 H 1.09000 * 110.40813 * 158.34000 * 24 15 14 48 48 H 1.08996 * 109.47157 * 30.59066 * 25 7 5 49 49 H 1.08998 * 109.46362 * 150.56725 * 25 7 5 50 50 H 1.07998 * 119.03733 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 0.0046 5 6 4.4062 2.3933 0.0101 6 8 3.8516 3.4717 -0.0602 7 7 5.7500 2.3308 0.0932 8 6 6.5204 3.5886 0.0507 9 6 7.6668 3.5985 1.0840 10 6 7.2081 2.9797 2.3812 11 6 7.5240 1.4866 2.3695 12 6 6.5026 0.6578 1.7113 13 6 5.1133 0.8111 2.3638 14 6 4.7149 -0.6176 2.7928 15 7 6.0017 -1.3375 2.9357 16 6 6.3528 -2.2476 3.8968 17 1 5.8182 -2.2758 4.8347 18 6 7.3957 -3.1339 3.6655 19 7 7.9587 -3.1920 2.4772 20 14 8.0003 -4.2442 5.0407 21 1 6.8872 -5.1125 5.5015 22 1 9.1140 -5.0898 4.5407 23 1 8.4808 -3.4125 6.1733 24 6 6.8228 -0.8493 1.8033 25 6 6.3771 1.0336 0.2143 26 7 4.2028 -0.0445 -0.0012 27 6 3.4955 -1.1537 -0.0061 28 7 2.1765 -1.1397 -0.0061 29 1 -0.3633 -0.0050 1.0276 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3633 0.8924 -0.5096 32 1 1.6912 2.1441 0.0004 33 1 6.9384 3.7139 -0.9481 34 1 5.8492 4.4218 0.2587 35 1 7.9809 4.6264 1.2653 36 1 8.5091 3.0296 0.6904 37 1 6.1333 3.1230 2.4925 38 1 7.7267 3.4545 3.2141 39 1 7.6340 1.1478 3.3996 40 1 8.4742 1.3377 1.8564 41 1 5.1733 1.4650 3.2339 42 1 4.3969 1.2038 1.6422 43 1 4.1844 -0.5946 3.7447 44 1 4.0998 -1.0872 2.0252 45 1 8.6878 -3.8111 2.3156 46 1 6.5375 -1.3555 0.8810 47 1 7.8824 -1.0011 2.0089 48 1 5.7699 0.2872 -0.2978 49 1 7.3690 1.0661 -0.2364 50 1 4.0097 -2.1033 -0.0111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045931586.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:41 Heat of formation + Delta-G solvation = 89.837145 kcal Electronic energy + Delta-G solvation = -33259.488161 eV Core-core repulsion = 29289.567153 eV Total energy + Delta-G solvation = -3969.921008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.87132 -39.95889 -38.30196 -35.95373 -34.91772 -33.37830 -32.93382 -32.36772 -30.91980 -28.78147 -28.25209 -27.43660 -25.60977 -25.35300 -24.41846 -23.61189 -22.66785 -20.95598 -20.30104 -19.46866 -18.34274 -17.93082 -16.92421 -16.60014 -16.23616 -16.10916 -15.59069 -15.21246 -15.00092 -14.56947 -14.46257 -14.08091 -13.88919 -13.67175 -13.45762 -13.35896 -13.08576 -12.75138 -12.53660 -12.45553 -12.42276 -12.01405 -11.76520 -11.50844 -11.21685 -11.03369 -10.86475 -10.81213 -10.74737 -10.57844 -10.34191 -10.27179 -10.11984 -10.03018 -9.83219 -9.80951 -9.75325 -9.52752 -9.30014 -8.73476 -8.59819 -8.21470 -6.72396 -5.78103 -3.12135 0.57680 0.95975 2.78126 2.94716 3.38880 3.43882 3.44548 3.85593 3.96150 4.05545 4.35561 4.49001 4.77469 4.87939 4.97593 5.04394 5.21348 5.21962 5.27711 5.35915 5.38274 5.44266 5.54188 5.59017 5.65913 5.66853 5.73282 5.77606 5.83852 5.90194 5.98185 6.08208 6.13929 6.19388 6.20291 6.28654 6.38786 6.56376 6.58732 6.66528 6.72470 6.84713 6.90821 6.93681 7.00033 7.08885 7.45615 7.49813 7.62226 7.76060 8.01183 8.17106 8.26913 9.15355 9.77221 10.59129 11.36259 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.005220 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.943900 B = 5362.712500 C = 7425.342073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.179 3.821 3 C -0.189 4.189 4 C 0.146 3.854 5 C 0.564 3.436 6 O -0.543 6.543 7 N -0.571 5.571 8 C 0.109 3.891 9 C -0.127 4.127 10 C -0.116 4.116 11 C -0.095 4.095 12 C -0.082 4.082 13 C -0.128 4.128 14 C 0.128 3.872 15 N -0.589 5.589 16 C -0.225 4.225 17 H 0.069 0.931 18 C 0.000 4.000 19 N -0.912 5.912 20 Si 0.907 3.093 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.183 3.817 25 C 0.070 3.930 26 N -0.473 5.473 27 C 0.314 3.686 28 N -0.514 5.514 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.033 0.967 44 H 0.019 0.981 45 H 0.254 0.746 46 H 0.030 0.970 47 H 0.074 0.926 48 H 0.155 0.845 49 H 0.062 0.938 50 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 11.145 -7.568 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.031 3.969 3 C -0.212 4.212 4 C 0.000 4.000 5 C 0.350 3.650 6 O -0.421 6.421 7 N -0.300 5.300 8 C -0.013 4.013 9 C -0.165 4.165 10 C -0.154 4.154 11 C -0.133 4.133 12 C -0.085 4.085 13 C -0.167 4.167 14 C 0.001 3.999 15 N -0.312 5.312 16 C -0.354 4.354 17 H 0.087 0.913 18 C -0.198 4.198 19 N -0.557 5.557 20 Si 0.737 3.263 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.057 3.943 25 C -0.053 4.053 26 N -0.189 5.189 27 C 0.028 3.972 28 N -0.229 5.229 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.171 0.829 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.092 0.908 48 H 0.171 0.829 49 H 0.081 0.919 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.150 10.660 -7.574 14.904 hybrid contribution 0.224 0.088 0.959 0.989 sum -6.926 10.749 -6.614 14.396 Atomic orbital electron populations 1.20787 0.87650 1.03999 1.03860 1.21772 0.97701 0.87869 0.89558 1.22603 0.94403 1.01092 1.03140 1.21394 0.91995 0.92909 0.93726 1.17902 0.82644 0.87028 0.77390 1.90738 1.71233 1.28457 1.51669 1.47702 1.04999 1.08574 1.68682 1.21977 0.94058 0.86323 0.98926 1.21807 0.97610 1.01293 0.95808 1.21096 1.01528 0.96517 0.96238 1.20337 0.98284 0.92992 1.01646 1.21068 0.94533 0.99541 0.93331 1.22963 0.96646 0.98421 0.98626 1.21746 0.90263 0.91007 0.96863 1.44832 1.08505 1.47562 1.30322 1.18875 1.15026 1.08250 0.93233 0.91328 1.24917 1.00483 0.97916 0.96443 1.69885 1.26677 1.39261 1.19902 0.86291 0.78204 0.80456 0.81322 1.21066 1.21578 1.21216 1.21420 0.97401 0.85285 0.90229 1.23409 0.99554 0.83944 0.98362 1.68838 1.38265 0.98512 1.13320 1.25181 0.86379 0.97471 0.88172 1.68261 1.10543 1.30112 1.14023 0.89502 0.89783 0.90130 0.82873 0.91893 0.89533 0.91146 0.91399 0.91906 0.92460 0.91996 0.92703 0.93306 0.92584 0.94819 0.96341 0.93632 0.95200 0.90811 0.82883 0.91947 0.78001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.22 36.01 0.37 -0.52 16 2 C 0.18 2.21 6.83 -82.23 -0.56 1.65 16 3 C -0.19 -2.48 9.40 -38.91 -0.37 -2.84 16 4 C 0.15 2.18 4.57 -82.64 -0.38 1.81 16 5 C 0.56 8.89 6.32 -12.05 -0.08 8.81 16 6 O -0.54 -9.34 15.70 5.39 0.08 -9.26 16 7 N -0.57 -8.36 2.03 -173.22 -0.35 -8.71 16 8 C 0.11 1.37 6.15 -2.76 -0.02 1.35 16 9 C -0.13 -1.49 5.71 -27.10 -0.15 -1.64 16 10 C -0.12 -1.63 5.35 -27.99 -0.15 -1.78 16 11 C -0.10 -1.60 3.85 -29.77 -0.11 -1.72 16 12 C -0.08 -1.46 0.57 -155.01 -0.09 -1.55 16 13 C -0.13 -2.35 4.42 -25.35 -0.11 -2.46 16 14 C 0.13 2.70 6.91 -2.40 -0.02 2.68 16 15 N -0.59 -14.45 3.37 -168.87 -0.57 -15.02 16 16 C -0.23 -6.14 10.34 -15.06 -0.16 -6.29 16 17 H 0.07 1.86 7.84 -52.49 -0.41 1.44 16 18 C 0.00 0.00 5.40 -17.43 -0.09 -0.09 16 19 N -0.91 -25.69 11.06 55.49 0.61 -25.07 16 20 Si 0.91 21.67 29.56 -169.99 -5.02 16.64 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.18 4.08 4.92 -2.43 -0.01 4.06 16 25 C 0.07 1.09 4.17 -4.08 -0.02 1.08 16 26 N -0.47 -7.27 3.85 -11.15 -0.04 -7.31 16 27 C 0.31 4.73 9.57 -92.26 -0.88 3.85 16 28 N -0.51 -7.36 10.36 -10.81 -0.11 -7.47 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.15 1.78 7.74 -52.49 -0.41 1.37 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.14 6.93 -51.93 -0.36 0.78 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.79 7.32 -51.93 -0.38 0.41 16 37 H 0.06 0.98 6.07 -51.93 -0.32 0.66 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.90 7.38 -51.93 -0.38 0.52 16 41 H 0.05 0.93 6.96 -51.93 -0.36 0.57 16 42 H 0.06 0.98 2.13 -51.93 -0.11 0.87 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.02 0.39 4.44 -51.93 -0.23 0.16 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.03 0.69 7.48 -51.93 -0.39 0.30 16 47 H 0.07 1.87 6.55 -51.93 -0.34 1.53 16 48 H 0.16 2.50 3.85 -87.14 -0.34 2.17 16 49 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 50 H 0.20 2.98 8.06 -52.49 -0.42 2.55 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -30.45 366.18 -10.09 -40.54 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.38 Total: 3.75 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -2.83 Total: 6.38 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.46 Total: -63.58 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.45 -10.09 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045931586.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.382 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds