Wall clock time and date at job start Wed Apr 1 2020 03:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38802 * 120.42625 * 2 1 4 4 C 1.39494 * 118.26248 * 179.78779 * 3 2 1 5 5 C 1.48455 * 120.54924 * 180.23919 * 4 3 2 6 6 O 1.21474 * 120.00293 * 356.13270 * 5 4 3 7 7 N 1.34782 * 120.00153 * 176.13394 * 5 4 3 8 8 C 1.47559 * 118.63604 * 177.97815 * 7 5 4 9 9 C 1.54331 * 111.96518 * 137.72416 * 8 7 5 10 10 C 1.50871 * 110.31648 * 319.66697 * 9 8 7 11 11 C 1.52620 * 109.37505 * 91.75563 * 10 9 8 12 12 C 1.47082 * 114.26404 * 275.25789 * 11 10 9 13 13 C 1.54249 * 112.34580 * 301.70564 * 12 11 10 14 14 C 1.54397 * 104.95210 * 237.64504 * 13 12 11 15 15 N 1.48148 * 104.61400 * 23.86903 * 14 13 12 16 16 C 1.36940 * 127.83198 * 140.41732 * 15 14 13 17 17 H 1.07990 * 120.00182 * 339.38726 * 16 15 14 18 18 C 1.38812 * 119.99725 * 159.38702 * 16 15 14 19 19 N 1.31621 * 120.00233 * 353.17648 * 18 16 15 20 20 Si 1.86803 * 119.99686 * 173.17235 * 18 16 15 21 21 H 1.48500 * 109.47145 * 60.00268 * 20 18 16 22 22 H 1.48506 * 109.46704 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47201 * 300.00132 * 20 18 16 24 24 C 1.48150 * 104.33082 * 320.43624 * 15 14 13 25 25 C 1.44593 * 118.63137 * 358.24244 * 7 5 4 26 26 N 1.33103 * 118.90144 * 0.48478 * 4 3 2 27 27 C 1.31554 * 120.73548 * 359.75266 * 26 4 3 28 28 N 1.31907 * 121.91946 * 0.02562 * 27 26 4 29 29 H 1.08992 * 109.46921 * 269.71853 * 1 2 3 30 30 H 1.09006 * 109.46569 * 149.71863 * 1 2 3 31 31 H 1.09000 * 109.47191 * 29.72503 * 1 2 3 32 32 H 1.07998 * 120.86686 * 0.02562 * 3 2 1 33 33 H 1.08994 * 108.94215 * 258.53955 * 8 7 5 34 34 H 1.08996 * 108.94291 * 17.15423 * 8 7 5 35 35 H 1.09000 * 109.35932 * 199.35940 * 9 8 7 36 36 H 1.09002 * 109.20266 * 79.87068 * 9 8 7 37 37 H 1.09002 * 109.49020 * 331.78930 * 10 9 8 38 38 H 1.09001 * 109.49130 * 211.72846 * 10 9 8 39 39 H 1.08999 * 108.52208 * 154.01455 * 11 10 9 40 40 H 1.09003 * 108.51929 * 36.49647 * 11 10 9 41 41 H 1.09004 * 110.34879 * 356.50912 * 13 12 11 42 42 H 1.09004 * 110.34624 * 118.77239 * 13 12 11 43 43 H 1.08997 * 110.40877 * 142.65344 * 14 13 12 44 44 H 1.09001 * 110.40616 * 265.08591 * 14 13 12 45 45 H 0.97001 * 119.99983 * 179.97438 * 19 18 16 46 46 H 1.09004 * 110.40917 * 280.76244 * 24 15 14 47 47 H 1.09000 * 110.40813 * 158.34000 * 24 15 14 48 48 H 1.08996 * 109.47157 * 30.59066 * 25 7 5 49 49 H 1.08998 * 109.46362 * 150.56725 * 25 7 5 50 50 H 1.07998 * 119.03733 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 0.0046 5 6 4.4062 2.3933 0.0101 6 8 3.8516 3.4717 -0.0602 7 7 5.7500 2.3308 0.0932 8 6 6.5204 3.5886 0.0507 9 6 7.6668 3.5985 1.0840 10 6 7.2081 2.9797 2.3812 11 6 7.5240 1.4866 2.3695 12 6 6.5026 0.6578 1.7113 13 6 5.1133 0.8111 2.3638 14 6 4.7149 -0.6176 2.7928 15 7 6.0017 -1.3375 2.9357 16 6 6.3528 -2.2476 3.8968 17 1 5.8182 -2.2758 4.8347 18 6 7.3957 -3.1339 3.6655 19 7 7.9587 -3.1920 2.4772 20 14 8.0003 -4.2442 5.0407 21 1 6.8872 -5.1125 5.5015 22 1 9.1140 -5.0898 4.5407 23 1 8.4808 -3.4125 6.1733 24 6 6.8228 -0.8493 1.8033 25 6 6.3771 1.0336 0.2143 26 7 4.2028 -0.0445 -0.0012 27 6 3.4955 -1.1537 -0.0061 28 7 2.1765 -1.1397 -0.0061 29 1 -0.3633 -0.0050 1.0276 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3633 0.8924 -0.5096 32 1 1.6912 2.1441 0.0004 33 1 6.9384 3.7139 -0.9481 34 1 5.8492 4.4218 0.2587 35 1 7.9809 4.6264 1.2653 36 1 8.5091 3.0296 0.6904 37 1 6.1333 3.1230 2.4925 38 1 7.7267 3.4545 3.2141 39 1 7.6340 1.1478 3.3996 40 1 8.4742 1.3377 1.8564 41 1 5.1733 1.4650 3.2339 42 1 4.3969 1.2038 1.6422 43 1 4.1844 -0.5946 3.7447 44 1 4.0998 -1.0872 2.0252 45 1 8.6878 -3.8111 2.3156 46 1 6.5375 -1.3555 0.8810 47 1 7.8824 -1.0011 2.0089 48 1 5.7699 0.2872 -0.2978 49 1 7.3690 1.0661 -0.2364 50 1 4.0097 -2.1033 -0.0111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045931586.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:40 Heat of formation + Delta-G solvation = 73.818537 kcal Electronic energy + Delta-G solvation = -33260.182780 eV Core-core repulsion = 29289.567153 eV Total energy + Delta-G solvation = -3970.615627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.06972 -41.15701 -39.72209 -37.39126 -36.04345 -34.78707 -34.32786 -33.64038 -32.55015 -30.02038 -29.69804 -28.78167 -27.05856 -26.62629 -25.97549 -24.77559 -24.01507 -22.39880 -21.84339 -20.61207 -19.75504 -19.10210 -18.79219 -17.83752 -17.65706 -17.25005 -16.73964 -16.59249 -16.36064 -16.14449 -15.67178 -15.51564 -15.20021 -15.02021 -14.73448 -14.58412 -14.30214 -14.15226 -13.84495 -13.74473 -13.28776 -13.28093 -13.15394 -12.97211 -12.80192 -12.68573 -12.52453 -12.30451 -12.13045 -11.97101 -11.77876 -11.69631 -11.65601 -11.54265 -11.31617 -11.21473 -11.08904 -11.06673 -10.64274 -10.49331 -9.91474 -9.45357 -8.72196 -7.87107 -5.22885 -0.56062 -0.10210 1.46367 1.47886 1.54384 1.58888 1.81377 2.50056 2.72841 2.80049 3.05485 3.26786 3.33968 3.67794 3.70307 3.78326 3.92457 3.98281 4.02655 4.10581 4.12188 4.30875 4.36938 4.42786 4.48211 4.52161 4.55000 4.70933 4.73359 4.76670 4.83263 4.84899 4.88784 4.92071 4.97737 5.02194 5.18421 5.20995 5.24301 5.26902 5.35884 5.41082 5.44088 5.48688 5.57674 5.65867 5.81908 5.82628 5.90035 6.25810 6.27125 6.85352 7.01267 7.09271 7.74120 8.57189 9.25891 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.005220 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.943900 B = 5362.712500 C = 7425.342073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.180 3.820 3 C -0.181 4.181 4 C 0.124 3.876 5 C 0.562 3.438 6 O -0.557 6.557 7 N -0.568 5.568 8 C 0.105 3.895 9 C -0.120 4.120 10 C -0.107 4.107 11 C -0.091 4.091 12 C -0.070 4.070 13 C -0.114 4.114 14 C 0.128 3.872 15 N -0.610 5.610 16 C -0.242 4.242 17 H 0.063 0.937 18 C -0.047 4.047 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.196 3.804 25 C 0.080 3.920 26 N -0.484 5.484 27 C 0.303 3.697 28 N -0.524 5.524 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.027 0.973 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.021 0.979 44 H 0.028 0.972 45 H 0.250 0.750 46 H 0.017 0.983 47 H 0.038 0.962 48 H 0.152 0.848 49 H 0.074 0.926 50 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 12.909 -8.135 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.032 3.968 3 C -0.203 4.203 4 C -0.021 4.021 5 C 0.349 3.651 6 O -0.437 6.437 7 N -0.297 5.297 8 C -0.016 4.016 9 C -0.158 4.158 10 C -0.145 4.145 11 C -0.129 4.129 12 C -0.073 4.073 13 C -0.153 4.153 14 C 0.002 3.998 15 N -0.334 5.334 16 C -0.371 4.371 17 H 0.081 0.919 18 C -0.242 4.242 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.070 3.930 25 C -0.043 4.043 26 N -0.201 5.201 27 C 0.016 3.984 28 N -0.239 5.239 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.190 0.810 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.040 0.960 44 H 0.045 0.955 45 H 0.059 0.941 46 H 0.035 0.965 47 H 0.056 0.944 48 H 0.167 0.833 49 H 0.092 0.908 50 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.074 12.457 -8.144 16.932 hybrid contribution 0.397 -0.454 1.120 1.271 sum -7.678 12.003 -7.024 15.886 Atomic orbital electron populations 1.20948 0.84479 1.05607 1.05009 1.22452 0.99572 0.86945 0.87827 1.22883 0.93709 1.02178 1.01572 1.21511 0.92969 0.92547 0.95054 1.18018 0.82928 0.87010 0.77171 1.90725 1.71484 1.28921 1.52532 1.47726 1.04945 1.08865 1.68129 1.22188 0.94047 0.84967 1.00409 1.21781 0.97255 1.02857 0.93924 1.21008 1.00842 0.94224 0.98428 1.20315 0.98189 0.95058 0.99344 1.20868 0.94372 0.96656 0.95403 1.22850 0.97376 0.96402 0.98696 1.21829 0.89130 0.92223 0.96599 1.45032 1.10348 1.47624 1.30390 1.19124 1.15228 1.08916 0.93835 0.91878 1.25600 1.00752 0.99314 0.98543 1.70048 1.26924 1.39784 1.21405 0.85330 0.77554 0.78664 0.78786 1.20479 1.21630 1.20862 1.21204 0.94872 0.88091 0.88836 1.23177 1.00273 0.84683 0.96210 1.68752 1.38662 0.98758 1.13960 1.25104 0.86965 0.97300 0.89026 1.68314 1.10151 1.31242 1.14230 0.88310 0.89265 0.87493 0.81036 0.89778 0.89772 0.88263 0.90882 0.93259 0.91229 0.95369 0.92296 0.94099 0.90936 0.96010 0.95471 0.94107 0.96522 0.94377 0.83253 0.90775 0.78686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.22 71.24 0.73 -0.70 16 2 C 0.18 4.11 6.83 42.64 0.29 4.40 16 3 C -0.18 -4.37 9.40 22.71 0.21 -4.16 16 4 C 0.12 3.58 4.57 41.98 0.19 3.77 16 5 C 0.56 16.85 6.32 86.97 0.55 17.40 16 6 O -0.56 -18.07 15.70 -3.63 -0.06 -18.13 16 7 N -0.57 -15.73 2.03 -820.26 -1.67 -17.39 16 8 C 0.10 2.34 6.15 86.63 0.53 2.87 16 9 C -0.12 -2.46 5.71 30.35 0.17 -2.29 16 10 C -0.11 -2.85 5.35 29.78 0.16 -2.69 16 11 C -0.09 -3.10 3.85 28.63 0.11 -2.98 16 12 C -0.07 -2.54 0.57 -52.51 -0.03 -2.57 16 13 C -0.11 -4.26 4.42 31.49 0.14 -4.12 16 14 C 0.13 5.55 6.91 86.54 0.60 6.15 16 15 N -0.61 -31.06 3.37 -688.20 -2.32 -33.38 16 16 C -0.24 -13.60 10.34 84.03 0.87 -12.73 16 17 H 0.06 3.52 7.84 -2.92 -0.02 3.50 16 18 C -0.05 -2.63 5.40 84.86 0.46 -2.17 16 19 N -0.93 -54.34 11.06 21.65 0.24 -54.10 16 20 Si 0.97 45.38 29.56 68.60 2.03 47.40 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 C 0.20 9.08 4.92 86.52 0.43 9.50 16 25 C 0.08 2.45 4.17 87.37 0.36 2.81 16 26 N -0.48 -14.86 3.85 -189.18 -0.73 -15.59 16 27 C 0.30 9.22 9.57 180.92 1.73 10.96 16 28 N -0.52 -14.65 10.36 -188.10 -1.95 -16.59 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.11 0.94 8.09 -2.39 -0.02 0.92 16 32 H 0.17 3.49 7.74 -2.91 -0.02 3.46 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.98 6.93 -2.39 -0.02 1.96 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.47 7.32 -2.39 -0.02 1.45 16 37 H 0.05 1.46 6.07 -2.39 -0.01 1.44 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.93 7.38 -2.39 -0.02 1.91 16 41 H 0.04 1.57 6.96 -2.38 -0.02 1.55 16 42 H 0.07 2.50 2.13 -2.39 -0.01 2.49 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.03 1.16 4.44 -2.39 -0.01 1.15 16 45 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 46 H 0.02 0.81 7.48 -2.39 -0.02 0.79 16 47 H 0.04 2.02 6.55 -2.39 -0.02 2.01 16 48 H 0.15 4.87 3.85 -71.90 -0.28 4.59 16 49 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 50 H 0.20 6.06 8.06 -2.91 -0.02 6.04 16 Total: -1.00 -67.33 366.18 3.76 -63.57 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.70 Total: 20.76 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 7.51 Total: 23.46 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -6.42 Total: -137.06 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.06 Total: -18.13 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -67.33 3.76 -63.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045931586.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.388 kcal (2) G-P(sol) polarization free energy of solvation -67.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds