Wall clock time and date at job start Wed Apr 1 2020 03:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38802 * 120.42645 * 2 1 4 4 C 1.39495 * 118.26240 * 180.23936 * 3 2 1 5 5 C 1.48460 * 120.54973 * 179.75816 * 4 3 2 6 6 O 1.21475 * 119.99771 * 6.91908 * 5 4 3 7 7 N 1.34776 * 119.99869 * 186.91610 * 5 4 3 8 8 C 1.43441 * 120.53659 * 357.36275 * 7 5 4 9 9 C 1.54913 * 116.07603 * 271.59318 * 8 7 5 10 10 C 1.54852 * 110.17039 * 318.63925 * 9 8 7 11 11 C 1.50016 * 110.86614 * 321.07386 * 10 9 8 12 12 C 1.52632 * 105.44735 * 97.58769 * 11 10 9 13 13 C 1.55444 * 108.24004 * 35.90092 * 12 11 10 14 14 C 1.54266 * 102.95417 * 149.87537 * 13 12 11 15 15 N 1.47011 * 107.26117 * 337.62107 * 14 13 12 16 16 C 1.36937 * 125.64953 * 178.89562 * 15 14 13 17 17 H 1.08001 * 120.00153 * 174.96007 * 16 15 14 18 18 C 1.38809 * 120.00034 * 354.97035 * 16 15 14 19 19 N 1.31620 * 120.00566 * 5.13568 * 18 16 15 20 20 Si 1.86805 * 119.99741 * 185.14278 * 18 16 15 21 21 H 1.48496 * 109.47196 * 94.99804 * 20 18 16 22 22 H 1.48502 * 109.46861 * 214.99446 * 20 18 16 23 23 H 1.48499 * 109.47181 * 334.99406 * 20 18 16 24 24 C 1.47384 * 108.69460 * 358.87688 * 15 14 13 25 25 C 1.46360 * 114.38577 * 270.80108 * 12 11 10 26 26 N 1.33102 * 118.89970 * 359.48378 * 4 3 2 27 27 C 1.31546 * 120.74167 * 0.27479 * 26 4 3 28 28 N 1.31917 * 121.91716 * 359.97438 * 27 26 4 29 29 H 1.09000 * 109.47176 * 270.28032 * 1 2 3 30 30 H 1.09002 * 109.47196 * 30.28385 * 1 2 3 31 31 H 1.09008 * 109.46970 * 150.28637 * 1 2 3 32 32 H 1.07996 * 120.86974 * 0.02562 * 3 2 1 33 33 H 1.09003 * 108.16347 * 33.30916 * 8 7 5 34 34 H 1.08995 * 108.16528 * 149.88097 * 8 7 5 35 35 H 1.08994 * 109.35423 * 78.85594 * 9 8 7 36 36 H 1.09005 * 109.35098 * 198.42584 * 9 8 7 37 37 H 1.09000 * 109.19744 * 81.42959 * 10 9 8 38 38 H 1.08994 * 109.19846 * 200.76699 * 10 9 8 39 39 H 1.08994 * 110.24658 * 338.60134 * 11 10 9 40 40 H 1.09002 * 110.24462 * 216.56438 * 11 10 9 41 41 H 1.08998 * 110.71849 * 31.50578 * 13 12 11 42 42 H 1.09006 * 110.71986 * 268.23914 * 13 12 11 43 43 H 1.08997 * 109.88725 * 218.20754 * 14 13 12 44 44 H 1.09002 * 109.88400 * 97.03452 * 14 13 12 45 45 H 0.96991 * 120.00379 * 180.02562 * 19 18 16 46 46 H 1.09006 * 110.36945 * 143.27369 * 24 15 14 47 47 H 1.09001 * 110.36651 * 265.59066 * 24 15 14 48 48 H 1.09002 * 109.84518 * 177.77810 * 25 12 11 49 49 H 1.08997 * 109.84640 * 298.75055 * 25 12 11 50 50 H 1.08002 * 119.04920 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1442 -0.0051 5 6 4.4062 2.3933 -0.0108 6 8 3.8562 3.4690 0.1158 7 7 5.7447 2.3338 -0.1562 8 6 6.4120 1.0675 -0.2500 9 6 6.8440 0.4245 1.0916 10 6 7.4233 1.5038 2.0389 11 6 8.2536 2.4938 1.2768 12 6 7.3327 3.6832 1.0182 13 6 6.4082 3.8606 2.2551 14 6 6.1393 5.3796 2.2708 15 7 7.2326 6.0238 1.5286 16 6 7.3547 7.3674 1.2939 17 1 8.2384 7.7524 0.8068 18 6 6.3428 8.2346 1.6822 19 7 5.3132 7.7809 2.3651 20 14 6.4422 10.0457 1.2352 21 1 5.6846 10.2883 -0.0188 22 1 5.8578 10.8589 2.3317 23 1 7.8630 10.4294 1.0373 24 6 8.1756 4.9840 1.0794 25 6 6.5614 3.5918 -0.2223 26 7 4.2027 -0.0445 0.0007 27 6 3.4955 -1.1537 0.0057 28 7 2.1764 -1.1398 0.0057 29 1 -0.3633 0.0050 1.0276 30 1 -0.3634 0.8874 -0.5182 31 1 -0.3633 -0.8926 -0.5094 32 1 1.6912 2.1441 0.0004 33 1 5.7486 0.3709 -0.7625 34 1 7.3015 1.1969 -0.8665 35 1 5.9797 -0.0435 1.5627 36 1 7.6035 -0.3338 0.9007 37 1 6.6029 2.0270 2.5303 38 1 8.0444 1.0220 2.7939 39 1 8.5848 2.0609 0.3329 40 1 9.1120 2.8041 1.8726 41 1 6.9194 3.5500 3.1663 42 1 5.4789 3.3059 2.1248 43 1 6.1244 5.7429 3.2984 44 1 5.1864 5.5924 1.7862 45 1 4.6059 8.3868 2.6361 46 1 8.5681 5.2286 0.0923 47 1 8.9898 4.8752 1.7959 48 1 5.9032 4.4558 -0.3133 49 1 7.2376 3.5493 -1.0762 50 1 4.0097 -2.1034 0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045931587.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:45 Heat of formation + Delta-G solvation = 79.718564 kcal Electronic energy + Delta-G solvation = -32173.540820 eV Core-core repulsion = 28203.181037 eV Total energy + Delta-G solvation = -3970.359783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.61488 -40.39123 -38.31325 -36.14581 -34.77167 -33.55326 -32.85291 -32.50314 -30.37366 -28.97184 -28.73576 -27.19194 -26.27793 -24.71796 -24.44862 -23.75655 -23.25957 -21.26118 -19.97527 -19.28162 -18.30827 -17.99331 -16.97496 -16.49997 -16.19671 -15.69974 -15.65270 -15.31930 -15.25378 -14.91887 -14.36374 -14.18747 -13.84021 -13.67410 -13.58743 -13.42728 -13.21342 -12.71411 -12.71051 -12.51562 -12.29092 -12.02572 -11.74040 -11.66992 -11.32128 -11.01010 -10.96133 -10.89050 -10.80327 -10.54145 -10.32181 -10.30092 -10.11337 -9.91272 -9.79255 -9.78695 -9.66561 -9.54860 -9.44153 -9.12428 -8.48174 -8.37505 -6.70422 -5.60232 -2.93652 0.34986 0.64630 2.76596 2.91500 3.46239 3.50858 3.53134 3.62077 3.71413 3.74361 4.18973 4.58484 4.62287 4.70975 4.96067 5.05830 5.06196 5.13919 5.19520 5.27082 5.31144 5.34556 5.44828 5.52459 5.56449 5.57204 5.64826 5.76379 5.86740 5.93396 5.98794 6.05532 6.15661 6.20931 6.28322 6.31746 6.36357 6.44476 6.54056 6.56399 6.59313 6.67096 6.70820 6.80101 6.89549 7.00337 7.56676 7.66885 7.72963 7.81413 8.00145 8.22640 8.38736 9.32729 9.93795 10.60933 11.50690 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013911 B = 0.003567 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.360674 B = 7848.601404 C = 9312.493677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.175 3.825 3 C -0.170 4.170 4 C 0.142 3.858 5 C 0.559 3.441 6 O -0.506 6.506 7 N -0.578 5.578 8 C 0.095 3.905 9 C -0.119 4.119 10 C -0.144 4.144 11 C -0.103 4.103 12 C -0.095 4.095 13 C -0.126 4.126 14 C 0.177 3.823 15 N -0.604 5.604 16 C -0.230 4.230 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.915 5.915 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.148 3.852 25 C 0.143 3.857 26 N -0.487 5.487 27 C 0.288 3.712 28 N -0.513 5.513 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.032 0.968 44 H 0.054 0.946 45 H 0.251 0.749 46 H 0.037 0.963 47 H 0.021 0.979 48 H 0.108 0.892 49 H 0.072 0.928 50 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 -21.403 -5.599 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.028 3.972 3 C -0.193 4.193 4 C -0.005 4.005 5 C 0.343 3.657 6 O -0.380 6.380 7 N -0.309 5.309 8 C -0.030 4.030 9 C -0.158 4.158 10 C -0.181 4.181 11 C -0.140 4.140 12 C -0.097 4.097 13 C -0.164 4.164 14 C 0.052 3.948 15 N -0.331 5.331 16 C -0.359 4.359 17 H 0.094 0.906 18 C -0.202 4.202 19 N -0.562 5.562 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.207 1.207 24 C 0.021 3.979 25 C 0.023 3.977 26 N -0.205 5.205 27 C 0.000 4.000 28 N -0.228 5.228 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.178 0.822 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.039 0.961 48 H 0.127 0.873 49 H 0.090 0.910 50 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.268 -21.424 -5.487 22.356 hybrid contribution -0.177 1.570 -0.009 1.580 sum -3.445 -19.853 -5.496 20.886 Atomic orbital electron populations 1.20821 0.87296 1.04319 1.04039 1.21823 0.97892 0.87738 0.89747 1.22855 0.94748 1.01472 1.00197 1.21859 0.92133 0.92781 0.93717 1.17850 0.82482 0.86870 0.78489 1.90911 1.70730 1.28107 1.48211 1.47932 1.05114 1.08210 1.69633 1.21667 0.98026 0.85459 0.97843 1.22471 0.99971 0.97425 0.95957 1.22003 1.00761 0.97086 0.98294 1.21103 0.97467 0.95310 1.00150 1.20938 0.96536 0.96232 0.96025 1.23054 0.97723 0.99812 0.95768 1.21173 0.92147 0.85343 0.96117 1.44491 1.23810 1.01840 1.62917 1.19025 1.02268 0.81134 1.33457 0.90617 1.24806 0.96858 0.97991 1.00536 1.69994 1.11092 1.33462 1.41684 0.86173 0.77259 0.85149 0.77628 1.21688 1.21871 1.20749 1.21744 0.92042 0.87086 0.97037 1.20943 0.93933 0.86228 0.96573 1.68852 1.39742 0.98568 1.13355 1.25110 0.86679 0.97201 0.91011 1.68192 1.10621 1.30485 1.13545 0.89340 0.89731 0.89752 0.82210 0.87388 0.92274 0.91973 0.91794 0.89556 0.93275 0.91993 0.91601 0.92506 0.92474 0.94950 0.92742 0.93879 0.94504 0.96099 0.87349 0.90991 0.78340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.22 36.00 0.37 -0.35 16 2 C 0.18 1.76 6.83 -82.23 -0.56 1.20 16 3 C -0.17 -2.02 9.41 -38.90 -0.37 -2.38 16 4 C 0.14 1.90 6.63 -82.64 -0.55 1.35 16 5 C 0.56 9.18 6.58 -12.05 -0.08 9.10 16 6 O -0.51 -10.33 15.67 5.39 0.08 -10.25 16 7 N -0.58 -8.63 2.15 -176.38 -0.38 -9.01 16 8 C 0.09 1.11 4.39 -4.65 -0.02 1.09 16 9 C -0.12 -1.33 6.18 -24.75 -0.15 -1.48 16 10 C -0.14 -1.89 5.16 -27.24 -0.14 -2.03 16 11 C -0.10 -1.42 5.01 -28.40 -0.14 -1.56 16 12 C -0.10 -1.65 0.50 -155.44 -0.08 -1.73 16 13 C -0.13 -2.50 3.91 -24.77 -0.10 -2.59 16 14 C 0.18 4.52 4.98 -3.10 -0.02 4.51 16 15 N -0.60 -15.70 3.38 -170.01 -0.57 -16.28 16 16 C -0.23 -6.56 10.27 -15.06 -0.15 -6.71 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 19 N -0.92 -27.94 10.34 55.49 0.57 -27.37 16 20 Si 0.91 22.72 29.56 -169.99 -5.02 17.69 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.15 3.05 6.10 -2.43 -0.01 3.04 16 25 C 0.14 2.43 4.74 -5.17 -0.02 2.41 16 26 N -0.49 -5.46 4.97 -11.14 -0.06 -5.51 16 27 C 0.29 2.71 12.27 -92.26 -1.13 1.58 16 28 N -0.51 -5.29 10.36 -10.81 -0.11 -5.40 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.16 1.86 7.75 -52.49 -0.41 1.45 16 33 H 0.11 1.21 4.93 -54.66 -0.27 0.94 16 34 H 0.06 0.64 6.90 -51.93 -0.36 0.28 16 35 H 0.06 0.72 6.97 -51.93 -0.36 0.36 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.34 3.99 -51.93 -0.21 1.13 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.76 6.31 -51.93 -0.33 0.43 16 40 H 0.07 0.92 7.36 -51.93 -0.38 0.54 16 41 H 0.06 1.08 6.91 -51.93 -0.36 0.72 16 42 H 0.06 1.15 5.60 -51.93 -0.29 0.86 16 43 H 0.03 0.92 7.65 -51.93 -0.40 0.53 16 44 H 0.05 1.60 7.24 -51.93 -0.38 1.22 16 45 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 47 H 0.02 0.44 7.44 -51.93 -0.39 0.05 16 48 H 0.11 2.32 6.78 -51.93 -0.35 1.97 16 49 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 50 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -33.56 373.29 -10.51 -44.07 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.40 Total: 1.25 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -3.26 Total: 5.18 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.55 Total: -63.57 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.56 -10.51 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045931587.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.791 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds