Wall clock time and date at job start Wed Apr 1 2020 03:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38802 * 120.42645 * 2 1 4 4 C 1.39495 * 118.26240 * 180.23936 * 3 2 1 5 5 C 1.48460 * 120.54973 * 179.75816 * 4 3 2 6 6 O 1.21475 * 119.99771 * 6.91908 * 5 4 3 7 7 N 1.34776 * 119.99869 * 186.91610 * 5 4 3 8 8 C 1.43441 * 120.53659 * 357.36275 * 7 5 4 9 9 C 1.54913 * 116.07603 * 271.59318 * 8 7 5 10 10 C 1.54852 * 110.17039 * 318.63925 * 9 8 7 11 11 C 1.50016 * 110.86614 * 321.07386 * 10 9 8 12 12 C 1.52632 * 105.44735 * 97.58769 * 11 10 9 13 13 C 1.55444 * 108.24004 * 35.90092 * 12 11 10 14 14 C 1.54266 * 102.95417 * 149.87537 * 13 12 11 15 15 N 1.47011 * 107.26117 * 337.62107 * 14 13 12 16 16 C 1.36937 * 125.64953 * 178.89562 * 15 14 13 17 17 H 1.08001 * 120.00153 * 174.96007 * 16 15 14 18 18 C 1.38809 * 120.00034 * 354.97035 * 16 15 14 19 19 N 1.31620 * 120.00566 * 5.13568 * 18 16 15 20 20 Si 1.86805 * 119.99741 * 185.14278 * 18 16 15 21 21 H 1.48496 * 109.47196 * 94.99804 * 20 18 16 22 22 H 1.48502 * 109.46861 * 214.99446 * 20 18 16 23 23 H 1.48499 * 109.47181 * 334.99406 * 20 18 16 24 24 C 1.47384 * 108.69460 * 358.87688 * 15 14 13 25 25 C 1.46360 * 114.38577 * 270.80108 * 12 11 10 26 26 N 1.33102 * 118.89970 * 359.48378 * 4 3 2 27 27 C 1.31546 * 120.74167 * 0.27479 * 26 4 3 28 28 N 1.31917 * 121.91716 * 359.97438 * 27 26 4 29 29 H 1.09000 * 109.47176 * 270.28032 * 1 2 3 30 30 H 1.09002 * 109.47196 * 30.28385 * 1 2 3 31 31 H 1.09008 * 109.46970 * 150.28637 * 1 2 3 32 32 H 1.07996 * 120.86974 * 0.02562 * 3 2 1 33 33 H 1.09003 * 108.16347 * 33.30916 * 8 7 5 34 34 H 1.08995 * 108.16528 * 149.88097 * 8 7 5 35 35 H 1.08994 * 109.35423 * 78.85594 * 9 8 7 36 36 H 1.09005 * 109.35098 * 198.42584 * 9 8 7 37 37 H 1.09000 * 109.19744 * 81.42959 * 10 9 8 38 38 H 1.08994 * 109.19846 * 200.76699 * 10 9 8 39 39 H 1.08994 * 110.24658 * 338.60134 * 11 10 9 40 40 H 1.09002 * 110.24462 * 216.56438 * 11 10 9 41 41 H 1.08998 * 110.71849 * 31.50578 * 13 12 11 42 42 H 1.09006 * 110.71986 * 268.23914 * 13 12 11 43 43 H 1.08997 * 109.88725 * 218.20754 * 14 13 12 44 44 H 1.09002 * 109.88400 * 97.03452 * 14 13 12 45 45 H 0.96991 * 120.00379 * 180.02562 * 19 18 16 46 46 H 1.09006 * 110.36945 * 143.27369 * 24 15 14 47 47 H 1.09001 * 110.36651 * 265.59066 * 24 15 14 48 48 H 1.09002 * 109.84518 * 177.77810 * 25 12 11 49 49 H 1.08997 * 109.84640 * 298.75055 * 25 12 11 50 50 H 1.08002 * 119.04920 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1442 -0.0051 5 6 4.4062 2.3933 -0.0108 6 8 3.8562 3.4690 0.1158 7 7 5.7447 2.3338 -0.1562 8 6 6.4120 1.0675 -0.2500 9 6 6.8440 0.4245 1.0916 10 6 7.4233 1.5038 2.0389 11 6 8.2536 2.4938 1.2768 12 6 7.3327 3.6832 1.0182 13 6 6.4082 3.8606 2.2551 14 6 6.1393 5.3796 2.2708 15 7 7.2326 6.0238 1.5286 16 6 7.3547 7.3674 1.2939 17 1 8.2384 7.7524 0.8068 18 6 6.3428 8.2346 1.6822 19 7 5.3132 7.7809 2.3651 20 14 6.4422 10.0457 1.2352 21 1 5.6846 10.2883 -0.0188 22 1 5.8578 10.8589 2.3317 23 1 7.8630 10.4294 1.0373 24 6 8.1756 4.9840 1.0794 25 6 6.5614 3.5918 -0.2223 26 7 4.2027 -0.0445 0.0007 27 6 3.4955 -1.1537 0.0057 28 7 2.1764 -1.1398 0.0057 29 1 -0.3633 0.0050 1.0276 30 1 -0.3634 0.8874 -0.5182 31 1 -0.3633 -0.8926 -0.5094 32 1 1.6912 2.1441 0.0004 33 1 5.7486 0.3709 -0.7625 34 1 7.3015 1.1969 -0.8665 35 1 5.9797 -0.0435 1.5627 36 1 7.6035 -0.3338 0.9007 37 1 6.6029 2.0270 2.5303 38 1 8.0444 1.0220 2.7939 39 1 8.5848 2.0609 0.3329 40 1 9.1120 2.8041 1.8726 41 1 6.9194 3.5500 3.1663 42 1 5.4789 3.3059 2.1248 43 1 6.1244 5.7429 3.2984 44 1 5.1864 5.5924 1.7862 45 1 4.6059 8.3868 2.6361 46 1 8.5681 5.2286 0.0923 47 1 8.9898 4.8752 1.7959 48 1 5.9032 4.4558 -0.3133 49 1 7.2376 3.5493 -1.0762 50 1 4.0097 -2.1034 0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045931587.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:44 Heat of formation + Delta-G solvation = 60.107303 kcal Electronic energy + Delta-G solvation = -32174.391228 eV Core-core repulsion = 28203.181037 eV Total energy + Delta-G solvation = -3971.210191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.60357 -41.60921 -39.71255 -37.59627 -35.83420 -34.87970 -34.14407 -33.63980 -32.16361 -30.57295 -29.70217 -28.36648 -27.85917 -25.93876 -25.74653 -25.05238 -24.44720 -22.62845 -21.67418 -20.32499 -19.78800 -18.96874 -18.71178 -17.76160 -17.30723 -17.07477 -16.79145 -16.60816 -16.27462 -16.22673 -15.98274 -15.42768 -15.24925 -15.01511 -14.87979 -14.50707 -14.24260 -13.98473 -13.91203 -13.70627 -13.54934 -13.25932 -13.18784 -13.00042 -12.85708 -12.81194 -12.66941 -12.11003 -12.07782 -11.91128 -11.82357 -11.78352 -11.60371 -11.45174 -11.22801 -11.16721 -11.08835 -10.91459 -10.68567 -10.65388 -10.08824 -9.58360 -8.86660 -7.83092 -5.18943 -0.61538 -0.15024 1.42287 1.45725 1.54165 1.62731 1.75010 2.49503 2.70836 2.80135 3.04889 3.29551 3.34779 3.57518 3.66861 3.70983 3.91390 3.95734 3.99850 4.20906 4.25475 4.31086 4.33896 4.40291 4.50705 4.55147 4.60912 4.66711 4.70795 4.80169 4.82013 4.88045 4.91521 4.95962 4.99487 5.05650 5.13834 5.16053 5.23454 5.33680 5.40144 5.45658 5.49750 5.56171 5.63078 5.64764 5.70614 5.76651 5.81255 6.20755 6.40617 6.87463 7.03163 7.10135 7.79921 8.45831 9.27172 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013911 B = 0.003567 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.360674 B = 7848.601404 C = 9312.493677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.182 3.818 3 C -0.185 4.185 4 C 0.127 3.873 5 C 0.551 3.449 6 O -0.564 6.564 7 N -0.570 5.570 8 C 0.086 3.914 9 C -0.110 4.110 10 C -0.144 4.144 11 C -0.092 4.092 12 C -0.076 4.076 13 C -0.104 4.104 14 C 0.193 3.807 15 N -0.624 5.624 16 C -0.241 4.241 17 H 0.087 0.913 18 C -0.070 4.070 19 N -0.952 5.952 20 Si 0.977 3.023 21 H -0.290 1.290 22 H -0.297 1.297 23 H -0.262 1.262 24 C 0.141 3.859 25 C 0.144 3.856 26 N -0.486 5.486 27 C 0.292 3.708 28 N -0.518 5.518 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.151 0.849 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.050 0.950 43 H -0.011 1.011 44 H 0.003 0.997 45 H 0.243 0.757 46 H 0.049 0.951 47 H 0.033 0.967 48 H 0.055 0.945 49 H 0.102 0.898 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -24.911 -6.842 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.035 3.965 3 C -0.208 4.208 4 C -0.019 4.019 5 C 0.338 3.662 6 O -0.441 6.441 7 N -0.300 5.300 8 C -0.037 4.037 9 C -0.148 4.148 10 C -0.181 4.181 11 C -0.129 4.129 12 C -0.078 4.078 13 C -0.142 4.142 14 C 0.067 3.933 15 N -0.350 5.350 16 C -0.370 4.370 17 H 0.105 0.895 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.805 3.195 21 H -0.217 1.217 22 H -0.223 1.223 23 H -0.186 1.186 24 C 0.015 3.985 25 C 0.024 3.976 26 N -0.203 5.203 27 C 0.006 3.994 28 N -0.233 5.233 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.169 0.831 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.007 0.993 44 H 0.021 0.979 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.051 0.949 48 H 0.073 0.927 49 H 0.120 0.880 50 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.254 -24.995 -6.751 25.921 hybrid contribution -0.794 2.583 0.374 2.728 sum -2.048 -22.411 -6.377 23.391 Atomic orbital electron populations 1.20944 0.84944 1.05442 1.05025 1.22272 0.99357 0.86836 0.88081 1.22914 0.94491 1.02143 1.01232 1.21431 0.92234 0.92435 0.95768 1.18377 0.83057 0.87337 0.77479 1.90885 1.71878 1.30511 1.50874 1.47951 1.04696 1.08689 1.68653 1.21975 0.98844 0.83871 0.99004 1.22439 1.00605 0.97166 0.94608 1.21910 0.99829 0.97369 0.99005 1.21089 0.96603 0.93365 1.01886 1.20882 0.95840 0.96562 0.94521 1.22846 0.98416 0.94965 0.98022 1.20777 0.90412 0.89260 0.92827 1.44773 1.24787 1.02337 1.63111 1.19503 1.02402 0.82636 1.32424 0.89549 1.25723 0.96788 1.02697 1.01041 1.70266 1.11899 1.34599 1.43318 0.85075 0.78037 0.79601 0.76750 1.21702 1.22345 1.18637 1.22026 0.91749 0.87130 0.97550 1.20741 0.93454 0.85837 0.97590 1.68799 1.39728 0.98059 1.13750 1.25937 0.86626 0.97848 0.89031 1.68326 1.11145 1.30181 1.13649 0.88229 0.88737 0.88498 0.83147 0.86330 0.90162 0.92419 0.88483 0.92722 0.91453 0.89042 0.90999 0.91332 0.93174 0.99321 0.97898 0.94809 0.93281 0.94945 0.92663 0.88021 0.74348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.22 71.24 0.73 -0.52 16 2 C 0.18 3.44 6.83 42.64 0.29 3.73 16 3 C -0.18 -4.49 9.41 22.71 0.21 -4.28 16 4 C 0.13 3.42 6.63 41.98 0.28 3.69 16 5 C 0.55 18.94 6.58 86.97 0.57 19.52 16 6 O -0.56 -25.27 15.67 -3.64 -0.06 -25.33 16 7 N -0.57 -16.81 2.15 -830.25 -1.78 -18.59 16 8 C 0.09 1.75 4.39 87.60 0.38 2.13 16 9 C -0.11 -1.98 6.18 31.88 0.20 -1.79 16 10 C -0.14 -3.31 5.16 30.27 0.16 -3.15 16 11 C -0.09 -2.22 5.01 29.51 0.15 -2.07 16 12 C -0.08 -2.59 0.50 -52.78 -0.03 -2.62 16 13 C -0.10 -4.33 3.91 31.86 0.12 -4.21 16 14 C 0.19 10.64 4.98 86.71 0.43 11.07 16 15 N -0.62 -33.81 3.38 -691.80 -2.34 -36.15 16 16 C -0.24 -14.14 10.27 84.03 0.86 -13.27 16 17 H 0.09 4.77 7.83 -2.91 -0.02 4.74 16 18 C -0.07 -4.23 5.48 84.86 0.47 -3.76 16 19 N -0.95 -62.14 10.34 21.65 0.22 -61.92 16 20 Si 0.98 48.36 29.56 68.60 2.03 50.39 16 21 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 22 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 24 C 0.14 5.76 6.10 86.94 0.53 6.29 16 25 C 0.14 4.94 4.74 83.62 0.40 5.33 16 26 N -0.49 -9.85 4.97 -189.16 -0.94 -10.79 16 27 C 0.29 4.60 12.27 180.92 2.22 6.82 16 28 N -0.52 -9.41 10.36 -188.10 -1.95 -11.36 16 29 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 0.93 8.10 -2.39 -0.02 0.91 16 31 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.15 3.84 7.75 -2.91 -0.02 3.82 16 33 H 0.12 2.26 4.93 -7.79 -0.04 2.23 16 34 H 0.08 1.34 6.90 -2.39 -0.02 1.32 16 35 H 0.06 1.13 6.97 -2.39 -0.02 1.12 16 36 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.05 1.63 3.99 -2.39 -0.01 1.62 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.74 6.31 -2.39 -0.02 1.72 16 40 H 0.07 1.71 7.36 -2.39 -0.02 1.69 16 41 H 0.07 2.66 6.91 -2.39 -0.02 2.64 16 42 H 0.05 2.15 5.60 -2.38 -0.01 2.14 16 43 H -0.01 -0.71 7.65 -2.39 -0.02 -0.73 16 44 H 0.00 0.18 7.24 -2.39 -0.02 0.16 16 45 H 0.24 15.47 8.31 -92.72 -0.77 14.70 16 46 H 0.05 1.89 8.05 -2.38 -0.02 1.87 16 47 H 0.03 1.28 7.44 -2.39 -0.02 1.27 16 48 H 0.05 2.52 6.78 -2.39 -0.02 2.51 16 49 H 0.10 2.85 8.12 -2.39 -0.02 2.83 16 50 H 0.24 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -81.24 373.29 4.09 -77.15 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.93 Total: 13.66 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 7.97 Total: 22.93 kcal Atomic # 7 Polarization: -132.01 SS G_CDS: -6.78 Total: -138.80 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.06 Total: -25.33 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Total: -81.24 4.09 -77.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045931587.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.255 kcal (2) G-P(sol) polarization free energy of solvation -81.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds