Wall clock time and date at job start Wed Apr 1 2020 03:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38822 * 120.42118 * 2 1 4 4 C 1.38781 * 118.50613 * 180.02562 * 3 2 1 5 5 N 1.32125 * 119.16614 * 359.97438 * 4 3 2 6 6 C 1.32442 * 120.76955 * 359.97438 * 5 4 3 7 7 C 1.48532 * 119.18761 * 179.97438 * 6 5 4 8 8 O 1.21468 * 120.00286 * 197.91913 * 7 6 5 9 9 N 1.35045 * 119.99885 * 17.92040 * 7 6 5 10 10 C 1.44457 * 118.43416 * 176.46558 * 9 7 6 11 11 C 1.54444 * 109.64733 * 268.02588 * 10 9 7 12 12 C 1.45406 * 112.72742 * 288.92895 * 11 10 9 13 13 C 1.52100 * 119.25230 * 54.06289 * 12 11 10 14 14 C 1.50656 * 112.53646 * 288.44379 * 13 12 11 15 15 C 1.52814 * 114.48726 * 324.61250 * 14 13 12 16 16 C 1.54878 * 105.18603 * 240.85070 * 15 14 13 17 17 N 1.48137 * 104.47571 * 23.01269 * 16 15 14 18 18 C 1.36943 * 127.89610 * 140.54955 * 17 16 15 19 19 H 1.08003 * 119.99655 * 346.52804 * 18 17 16 20 20 C 1.38810 * 119.99941 * 166.53430 * 18 17 16 21 21 N 1.31621 * 120.00060 * 349.34333 * 20 18 17 22 22 Si 1.86800 * 119.99562 * 169.34914 * 20 18 17 23 23 H 1.48507 * 109.47181 * 89.99827 * 22 20 18 24 24 H 1.48505 * 109.47033 * 209.99367 * 22 20 18 25 25 H 1.48497 * 109.47618 * 329.99509 * 22 20 18 26 26 C 1.48141 * 104.17257 * 320.56469 * 17 16 15 27 27 C 1.47152 * 118.55756 * 356.24780 * 9 7 6 28 28 N 1.32097 * 120.41448 * 180.27311 * 2 1 3 29 29 H 1.09007 * 109.47088 * 89.99751 * 1 2 3 30 30 H 1.09002 * 109.47787 * 209.99961 * 1 2 3 31 31 H 1.09008 * 109.47261 * 330.00553 * 1 2 3 32 32 H 1.07997 * 120.74453 * 0.04385 * 3 2 1 33 33 H 1.07998 * 120.41358 * 179.97438 * 4 3 2 34 34 H 1.08712 * 110.19497 * 146.84782 * 10 9 7 35 35 H 1.09351 * 108.99153 * 27.48578 * 10 9 7 36 36 H 1.09706 * 108.53343 * 167.60400 * 11 10 9 37 37 H 1.09503 * 109.00564 * 50.90579 * 11 10 9 38 38 H 1.10903 * 106.82368 * 174.51912 * 12 11 10 39 39 H 1.09148 * 109.32001 * 286.93494 * 12 11 10 40 40 H 1.09515 * 109.32340 * 49.53139 * 13 12 11 41 41 H 1.09540 * 109.24337 * 167.45302 * 13 12 11 42 42 H 1.08554 * 112.55365 * 359.95762 * 15 14 13 43 43 H 1.09482 * 110.56158 * 123.18005 * 15 14 13 44 44 H 1.08929 * 110.21698 * 141.74102 * 16 15 14 45 45 H 1.08893 * 110.28824 * 264.17100 * 16 15 14 46 46 H 0.97002 * 119.99643 * 180.02562 * 21 20 18 47 47 H 1.08862 * 110.65585 * 281.90303 * 26 17 16 48 48 H 1.08840 * 110.70967 * 158.66808 * 26 17 16 49 49 H 1.08950 * 109.39907 * 27.65638 * 27 9 7 50 50 H 1.09014 * 109.26594 * 268.42040 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1507 -0.0005 5 7 4.2019 -0.0239 -0.0005 6 6 3.5005 -1.1473 0.0005 7 6 4.2168 -2.4485 -0.0001 8 8 3.6325 -3.4633 -0.3229 9 7 5.5177 -2.5033 0.3583 10 6 6.1601 -3.7956 0.4205 11 6 6.0444 -4.3647 1.8516 12 6 6.8805 -3.6561 2.8072 13 6 6.7506 -2.1458 2.9319 14 6 7.3170 -1.4173 1.7411 15 6 8.5558 -2.0704 1.1294 16 6 9.6789 -1.0119 1.2602 17 7 9.2363 -0.1378 2.3713 18 6 10.0024 0.4169 3.3616 19 1 11.0111 0.0666 3.5242 20 6 9.4826 1.4292 4.1565 21 7 8.3422 2.0008 3.8321 22 14 10.4017 1.9802 5.6865 23 1 11.3379 3.0776 5.3333 24 1 9.4303 2.4652 6.6997 25 1 11.1676 0.8362 6.2430 26 6 7.7756 -0.0015 2.1657 27 6 6.2171 -1.2449 0.6626 28 7 2.1757 -1.1392 -0.0054 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3635 -0.8900 0.5138 31 1 -0.3634 0.8901 0.5138 32 1 1.6890 2.1432 0.0007 33 1 4.1745 2.0633 -0.0010 34 1 7.2066 -3.7084 0.1391 35 1 5.6624 -4.4745 -0.2775 36 1 6.3324 -5.4230 1.8303 37 1 4.9981 -4.3162 2.1711 38 1 6.6484 -4.0736 3.8081 39 1 7.9258 -3.9209 2.6384 40 1 5.6935 -1.8806 3.0392 41 1 7.2756 -1.8116 3.8334 42 1 8.8497 -2.9758 1.6512 43 1 8.3912 -2.2896 0.0695 44 1 10.6238 -1.4943 1.5073 45 1 9.7694 -0.4414 0.3372 46 1 7.9792 2.7084 4.3875 47 1 7.5644 0.7138 1.3726 48 1 7.2823 0.2908 3.0909 49 1 5.4984 -0.5094 1.0227 50 1 6.6874 -0.8662 -0.2451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045935770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:49 Heat of formation + Delta-G solvation = 67.337670 kcal Electronic energy + Delta-G solvation = -32028.396333 eV Core-core repulsion = 28057.499674 eV Total energy + Delta-G solvation = -3970.896659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.52668 -40.02666 -38.34595 -35.83176 -34.95294 -33.55991 -32.84576 -32.59634 -30.98089 -28.98363 -28.41763 -27.38575 -25.73692 -25.52391 -24.51765 -23.32429 -22.74210 -21.26212 -20.24076 -19.43795 -18.13515 -17.73364 -17.19378 -16.65987 -16.28195 -16.05383 -15.86895 -15.21827 -14.81729 -14.57765 -14.42836 -14.13468 -13.76062 -13.75206 -13.50498 -13.28154 -13.11658 -12.81447 -12.73299 -12.64343 -12.58979 -12.15491 -11.84441 -11.58256 -11.15916 -11.11450 -10.93863 -10.84431 -10.70843 -10.60038 -10.35279 -10.22053 -10.13535 -9.95786 -9.81417 -9.75872 -9.67861 -9.58520 -9.43456 -8.93712 -8.64179 -8.36628 -6.83164 -5.77823 -3.09486 0.37464 0.89653 2.62762 2.81861 3.37462 3.43855 3.45269 3.68265 3.89154 3.95228 4.27768 4.48027 4.64671 4.84332 4.93532 4.96545 5.02196 5.17881 5.20946 5.23319 5.32624 5.41206 5.50306 5.52424 5.63887 5.64544 5.73270 5.76951 5.85055 5.91079 6.01265 6.04849 6.12772 6.21451 6.26763 6.34122 6.39247 6.51763 6.58346 6.65867 6.72830 6.80028 6.80675 6.89569 6.95730 7.08736 7.37669 7.41132 7.58127 7.74452 7.79296 8.22340 8.23419 9.13535 9.76903 10.54859 11.36005 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.003884 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.846718 B = 7206.501606 C = 8804.189987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.167 3.833 3 C -0.211 4.211 4 C 0.145 3.855 5 N -0.479 5.479 6 C 0.288 3.712 7 C 0.576 3.424 8 O -0.519 6.519 9 N -0.572 5.572 10 C 0.110 3.890 11 C -0.121 4.121 12 C -0.117 4.117 13 C -0.084 4.084 14 C -0.090 4.090 15 C -0.125 4.125 16 C 0.123 3.877 17 N -0.594 5.594 18 C -0.220 4.220 19 H 0.075 0.925 20 C -0.007 4.007 21 N -0.916 5.916 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.173 3.827 27 C 0.108 3.892 28 N -0.474 5.474 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.152 0.848 33 H 0.180 0.820 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.043 0.957 45 H 0.019 0.981 46 H 0.252 0.748 47 H 0.021 0.979 48 H 0.089 0.911 49 H 0.119 0.881 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.244 -4.384 -8.029 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.020 3.980 3 C -0.233 4.233 4 C -0.019 4.019 5 N -0.197 5.197 6 C 0.019 3.981 7 C 0.360 3.640 8 O -0.393 6.393 9 N -0.303 5.303 10 C -0.012 4.012 11 C -0.160 4.160 12 C -0.155 4.155 13 C -0.122 4.122 14 C -0.093 4.093 15 C -0.164 4.164 16 C -0.004 4.004 17 N -0.318 5.318 18 C -0.349 4.349 19 H 0.093 0.907 20 C -0.203 4.203 21 N -0.563 5.563 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.046 3.954 27 C -0.014 4.014 28 N -0.190 5.190 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.170 0.830 33 H 0.197 0.803 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.062 0.938 47 H 0.039 0.961 48 H 0.107 0.893 49 H 0.135 0.865 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.022 -5.652 -7.996 15.505 hybrid contribution 0.121 1.407 0.854 1.650 sum -11.901 -4.245 -7.142 14.514 Atomic orbital electron populations 1.20794 0.87416 1.04267 1.03797 1.21841 0.97851 0.87879 0.90400 1.23005 0.96726 1.00592 1.02973 1.23572 0.92249 0.96687 0.89414 1.68961 1.39503 0.98855 1.12396 1.22926 0.87377 0.93243 0.94572 1.17467 0.82013 0.85618 0.78950 1.90754 1.66532 1.34044 1.47964 1.47528 1.09140 1.08841 1.64779 1.21516 0.98801 0.83602 0.97313 1.20779 1.00768 0.99234 0.95213 1.20080 1.00479 0.96349 0.98559 1.20820 0.99948 0.92825 0.98606 1.21711 0.93220 1.00427 0.93933 1.22604 0.95938 0.99109 0.98725 1.21807 0.95394 0.91733 0.91466 1.44907 1.03319 1.56435 1.27107 1.18984 0.96605 1.12777 1.06510 0.90739 1.24796 0.98046 0.97267 1.00218 1.69894 1.20588 1.27034 1.38772 0.86198 0.78650 0.78447 0.82938 1.21599 1.21659 1.20679 1.21679 0.85043 0.88575 1.00066 1.23233 0.96002 0.83626 0.98494 1.68080 1.08551 1.30455 1.11883 0.89562 0.89726 0.89896 0.83035 0.80335 0.89427 0.90100 0.91390 0.92470 0.93880 0.91943 0.93515 0.90973 0.91611 0.92819 0.93848 0.96279 0.93780 0.96129 0.89287 0.86452 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.22 36.00 0.37 -0.39 16 2 C 0.17 1.87 6.82 -82.26 -0.56 1.31 16 3 C -0.21 -1.97 9.87 -39.16 -0.39 -2.35 16 4 C 0.15 1.62 11.30 -17.22 -0.19 1.43 16 5 N -0.48 -6.94 6.13 -11.12 -0.07 -7.01 16 6 C 0.29 4.60 7.31 -157.07 -1.15 3.45 16 7 C 0.58 9.85 7.63 -11.89 -0.09 9.76 16 8 O -0.52 -9.93 16.24 5.39 0.09 -9.84 16 9 N -0.57 -8.93 2.60 -173.36 -0.45 -9.38 16 10 C 0.11 1.54 5.35 -4.37 -0.02 1.51 16 11 C -0.12 -1.64 5.68 -29.55 -0.17 -1.81 16 12 C -0.12 -1.72 4.54 -30.76 -0.14 -1.86 16 13 C -0.08 -1.47 4.63 -28.36 -0.13 -1.61 16 14 C -0.09 -1.61 0.60 -153.79 -0.09 -1.70 16 15 C -0.13 -2.10 4.31 -25.84 -0.11 -2.21 16 16 C 0.12 2.47 7.27 -2.15 -0.02 2.46 16 17 N -0.59 -14.57 3.38 -168.53 -0.57 -15.14 16 18 C -0.22 -5.96 10.36 -15.06 -0.16 -6.12 16 19 H 0.07 1.97 7.85 -52.48 -0.41 1.56 16 20 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 21 N -0.92 -25.86 10.83 55.49 0.60 -25.26 16 22 Si 0.91 21.55 29.57 -169.99 -5.03 16.52 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.17 3.90 4.77 -2.21 -0.01 3.89 16 27 C 0.11 1.76 3.27 -2.62 -0.01 1.75 16 28 N -0.47 -7.15 10.12 -7.38 -0.07 -7.23 16 29 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.40 8.10 -51.92 -0.42 -0.02 16 32 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.09 1.13 5.37 -52.09 -0.28 0.85 16 35 H 0.08 1.13 7.13 -51.73 -0.37 0.76 16 36 H 0.07 0.78 8.20 -51.53 -0.42 0.36 16 37 H 0.06 0.85 8.18 -51.64 -0.42 0.43 16 38 H 0.04 0.61 8.25 -50.84 -0.42 0.19 16 39 H 0.06 0.90 5.92 -51.85 -0.31 0.60 16 40 H 0.05 0.83 7.86 -51.64 -0.41 0.42 16 41 H 0.07 1.45 7.75 -51.62 -0.40 1.05 16 42 H 0.07 1.06 5.59 -52.18 -0.29 0.76 16 43 H 0.05 0.81 6.38 -51.66 -0.33 0.48 16 44 H 0.04 0.85 8.14 -51.97 -0.42 0.42 16 45 H 0.02 0.39 8.13 -51.99 -0.42 -0.03 16 46 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.02 0.49 7.72 -52.01 -0.40 0.09 16 48 H 0.09 2.28 5.95 -52.02 -0.31 1.97 16 49 H 0.12 2.01 4.58 -65.20 -0.30 1.71 16 50 H 0.06 1.05 7.90 -51.92 -0.41 0.64 16 LS Contribution 379.22 15.07 5.71 5.71 Total: -1.00 -32.57 379.22 -10.32 -42.89 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.57 Total: 1.50 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -2.96 Total: 7.23 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -0.56 Total: -64.01 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.57 -10.32 -42.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045935770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.225 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds