Wall clock time and date at job start Wed Apr 1 2020 03:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38822 * 120.42118 * 2 1 4 4 C 1.38781 * 118.50613 * 180.02562 * 3 2 1 5 5 N 1.32125 * 119.16614 * 359.97438 * 4 3 2 6 6 C 1.32442 * 120.76955 * 359.97438 * 5 4 3 7 7 C 1.48532 * 119.18761 * 179.97438 * 6 5 4 8 8 O 1.21468 * 120.00286 * 197.91913 * 7 6 5 9 9 N 1.35045 * 119.99885 * 17.92040 * 7 6 5 10 10 C 1.44457 * 118.43416 * 176.46558 * 9 7 6 11 11 C 1.54444 * 109.64733 * 268.02588 * 10 9 7 12 12 C 1.45406 * 112.72742 * 288.92895 * 11 10 9 13 13 C 1.52100 * 119.25230 * 54.06289 * 12 11 10 14 14 C 1.50656 * 112.53646 * 288.44379 * 13 12 11 15 15 C 1.52814 * 114.48726 * 324.61250 * 14 13 12 16 16 C 1.54878 * 105.18603 * 240.85070 * 15 14 13 17 17 N 1.48137 * 104.47571 * 23.01269 * 16 15 14 18 18 C 1.36943 * 127.89610 * 140.54955 * 17 16 15 19 19 H 1.08003 * 119.99655 * 346.52804 * 18 17 16 20 20 C 1.38810 * 119.99941 * 166.53430 * 18 17 16 21 21 N 1.31621 * 120.00060 * 349.34333 * 20 18 17 22 22 Si 1.86800 * 119.99562 * 169.34914 * 20 18 17 23 23 H 1.48507 * 109.47181 * 89.99827 * 22 20 18 24 24 H 1.48505 * 109.47033 * 209.99367 * 22 20 18 25 25 H 1.48497 * 109.47618 * 329.99509 * 22 20 18 26 26 C 1.48141 * 104.17257 * 320.56469 * 17 16 15 27 27 C 1.47152 * 118.55756 * 356.24780 * 9 7 6 28 28 N 1.32097 * 120.41448 * 180.27311 * 2 1 3 29 29 H 1.09007 * 109.47088 * 89.99751 * 1 2 3 30 30 H 1.09002 * 109.47787 * 209.99961 * 1 2 3 31 31 H 1.09008 * 109.47261 * 330.00553 * 1 2 3 32 32 H 1.07997 * 120.74453 * 0.04385 * 3 2 1 33 33 H 1.07998 * 120.41358 * 179.97438 * 4 3 2 34 34 H 1.08712 * 110.19497 * 146.84782 * 10 9 7 35 35 H 1.09351 * 108.99153 * 27.48578 * 10 9 7 36 36 H 1.09706 * 108.53343 * 167.60400 * 11 10 9 37 37 H 1.09503 * 109.00564 * 50.90579 * 11 10 9 38 38 H 1.10903 * 106.82368 * 174.51912 * 12 11 10 39 39 H 1.09148 * 109.32001 * 286.93494 * 12 11 10 40 40 H 1.09515 * 109.32340 * 49.53139 * 13 12 11 41 41 H 1.09540 * 109.24337 * 167.45302 * 13 12 11 42 42 H 1.08554 * 112.55365 * 359.95762 * 15 14 13 43 43 H 1.09482 * 110.56158 * 123.18005 * 15 14 13 44 44 H 1.08929 * 110.21698 * 141.74102 * 16 15 14 45 45 H 1.08893 * 110.28824 * 264.17100 * 16 15 14 46 46 H 0.97002 * 119.99643 * 180.02562 * 21 20 18 47 47 H 1.08862 * 110.65585 * 281.90303 * 26 17 16 48 48 H 1.08840 * 110.70967 * 158.66808 * 26 17 16 49 49 H 1.08950 * 109.39907 * 27.65638 * 27 9 7 50 50 H 1.09014 * 109.26594 * 268.42040 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1507 -0.0005 5 7 4.2019 -0.0239 -0.0005 6 6 3.5005 -1.1473 0.0005 7 6 4.2168 -2.4485 -0.0001 8 8 3.6325 -3.4633 -0.3229 9 7 5.5177 -2.5033 0.3583 10 6 6.1601 -3.7956 0.4205 11 6 6.0444 -4.3647 1.8516 12 6 6.8805 -3.6561 2.8072 13 6 6.7506 -2.1458 2.9319 14 6 7.3170 -1.4173 1.7411 15 6 8.5558 -2.0704 1.1294 16 6 9.6789 -1.0119 1.2602 17 7 9.2363 -0.1378 2.3713 18 6 10.0024 0.4169 3.3616 19 1 11.0111 0.0666 3.5242 20 6 9.4826 1.4292 4.1565 21 7 8.3422 2.0008 3.8321 22 14 10.4017 1.9802 5.6865 23 1 11.3379 3.0776 5.3333 24 1 9.4303 2.4652 6.6997 25 1 11.1676 0.8362 6.2430 26 6 7.7756 -0.0015 2.1657 27 6 6.2171 -1.2449 0.6626 28 7 2.1757 -1.1392 -0.0054 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3635 -0.8900 0.5138 31 1 -0.3634 0.8901 0.5138 32 1 1.6890 2.1432 0.0007 33 1 4.1745 2.0633 -0.0010 34 1 7.2066 -3.7084 0.1391 35 1 5.6624 -4.4745 -0.2775 36 1 6.3324 -5.4230 1.8303 37 1 4.9981 -4.3162 2.1711 38 1 6.6484 -4.0736 3.8081 39 1 7.9258 -3.9209 2.6384 40 1 5.6935 -1.8806 3.0392 41 1 7.2756 -1.8116 3.8334 42 1 8.8497 -2.9758 1.6512 43 1 8.3912 -2.2896 0.0695 44 1 10.6238 -1.4943 1.5073 45 1 9.7694 -0.4414 0.3372 46 1 7.9792 2.7084 4.3875 47 1 7.5644 0.7138 1.3726 48 1 7.2823 0.2908 3.0909 49 1 5.4984 -0.5094 1.0227 50 1 6.6874 -0.8662 -0.2451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045935770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:47 Heat of formation + Delta-G solvation = 48.420985 kcal Electronic energy + Delta-G solvation = -32029.216622 eV Core-core repulsion = 28057.499674 eV Total energy + Delta-G solvation = -3971.716948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.56720 -41.27250 -39.77917 -37.32218 -35.93702 -34.78164 -34.50105 -33.65643 -32.61679 -30.24746 -29.61925 -28.69606 -27.36597 -26.79338 -25.93285 -24.38190 -23.99664 -22.67247 -21.85472 -20.59730 -19.50642 -18.86802 -18.79199 -18.16236 -17.45246 -17.16138 -16.92892 -16.61957 -16.31712 -15.89437 -15.69805 -15.52174 -15.13671 -14.95730 -14.72299 -14.46476 -14.28643 -14.10371 -14.03809 -13.88975 -13.61114 -13.28564 -13.17883 -13.13205 -12.76062 -12.65667 -12.58401 -12.25985 -12.05157 -11.99189 -11.81803 -11.70492 -11.61856 -11.51184 -11.43925 -11.13969 -10.93207 -10.84823 -10.63559 -10.57855 -10.06278 -9.64067 -8.80764 -7.84466 -5.17203 -0.60253 0.01097 1.45730 1.47982 1.48835 1.57493 1.68595 2.52064 2.67247 2.78579 3.04320 3.35148 3.51264 3.58469 3.70009 3.78377 3.84895 3.95586 4.03831 4.14670 4.16543 4.27382 4.36239 4.42622 4.44396 4.57650 4.59292 4.69834 4.72097 4.75517 4.78520 4.88020 4.93632 4.98735 5.03828 5.07368 5.10079 5.18489 5.24031 5.27768 5.37202 5.40258 5.42139 5.53775 5.62061 5.64545 5.71346 5.84452 5.90545 6.13381 6.26982 6.75627 7.02102 7.09487 7.77224 8.56145 9.28453 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.003884 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.846718 B = 7206.501606 C = 8804.189987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.152 3.848 3 C -0.185 4.185 4 C 0.128 3.872 5 N -0.499 5.499 6 C 0.260 3.740 7 C 0.572 3.428 8 O -0.548 6.548 9 N -0.568 5.568 10 C 0.105 3.895 11 C -0.115 4.115 12 C -0.111 4.111 13 C -0.077 4.077 14 C -0.076 4.076 15 C -0.113 4.113 16 C 0.117 3.883 17 N -0.618 5.618 18 C -0.232 4.232 19 H 0.077 0.923 20 C -0.059 4.059 21 N -0.943 5.943 22 Si 0.969 3.031 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.272 1.272 26 C 0.183 3.817 27 C 0.122 3.878 28 N -0.504 5.504 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.198 0.802 33 H 0.202 0.798 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.020 0.980 46 H 0.247 0.753 47 H 0.002 0.998 48 H 0.052 0.948 49 H 0.111 0.889 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.616 -4.651 -8.583 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.006 3.994 3 C -0.206 4.206 4 C -0.035 4.035 5 N -0.217 5.217 6 C -0.009 4.009 7 C 0.357 3.643 8 O -0.425 6.425 9 N -0.298 5.298 10 C -0.017 4.017 11 C -0.154 4.154 12 C -0.148 4.148 13 C -0.115 4.115 14 C -0.079 4.079 15 C -0.151 4.151 16 C -0.008 4.008 17 N -0.342 5.342 18 C -0.361 4.361 19 H 0.095 0.905 20 C -0.253 4.253 21 N -0.591 5.591 22 Si 0.797 3.203 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.197 1.197 26 C 0.056 3.944 27 C 0.000 4.000 28 N -0.221 5.221 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.215 0.785 33 H 0.219 0.781 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.038 0.962 46 H 0.056 0.944 47 H 0.020 0.980 48 H 0.071 0.929 49 H 0.128 0.872 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.375 -5.932 -8.566 16.178 hybrid contribution 0.181 1.596 0.992 1.887 sum -12.194 -4.336 -7.575 14.996 Atomic orbital electron populations 1.20933 0.84586 1.05321 1.05033 1.22608 0.99663 0.87516 0.89605 1.23462 0.95869 1.01840 0.99453 1.24103 0.93753 0.96348 0.89332 1.68821 1.40279 0.99560 1.13083 1.22660 0.87954 0.93136 0.97165 1.17748 0.82205 0.86017 0.78373 1.90714 1.67097 1.35177 1.49479 1.47523 1.08885 1.09127 1.64246 1.21702 0.99470 0.82828 0.97702 1.20734 0.99520 1.00759 0.94341 1.19988 1.01374 0.93848 0.99561 1.20705 0.98597 0.95179 0.96970 1.21496 0.94286 0.97512 0.94591 1.22542 0.93729 0.98327 1.00472 1.21996 0.96949 0.91822 0.90050 1.45178 1.04107 1.56888 1.27995 1.19319 0.96974 1.12647 1.07207 0.90539 1.25528 0.99044 0.97818 1.02876 1.70075 1.21940 1.27486 1.39607 0.85234 0.77387 0.78072 0.79557 1.21335 1.22158 1.19738 1.21432 0.84336 0.90969 0.97642 1.22978 0.95263 0.84024 0.97711 1.68057 1.08422 1.32754 1.12896 0.88052 0.90722 0.86766 0.78474 0.78093 0.87875 0.89909 0.88308 0.94134 0.93174 0.90884 0.94657 0.94203 0.90028 0.90214 0.93106 0.96188 0.94377 0.98046 0.92941 0.87193 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.22 71.23 0.73 -0.50 16 2 C 0.15 3.18 6.82 42.66 0.29 3.47 16 3 C -0.18 -3.01 9.87 22.54 0.22 -2.78 16 4 C 0.13 2.74 11.30 84.78 0.96 3.70 16 5 N -0.50 -14.61 6.13 -189.10 -1.16 -15.77 16 6 C 0.26 8.47 7.31 137.68 1.01 9.48 16 7 C 0.57 19.91 7.63 86.95 0.66 20.58 16 8 O -0.55 -21.39 16.24 -3.61 -0.06 -21.45 16 9 N -0.57 -17.57 2.60 -820.55 -2.13 -19.71 16 10 C 0.11 2.75 5.35 87.25 0.47 3.22 16 11 C -0.12 -2.89 5.68 28.77 0.16 -2.73 16 12 C -0.11 -3.07 4.54 27.98 0.13 -2.95 16 13 C -0.08 -2.71 4.63 29.54 0.14 -2.58 16 14 C -0.08 -2.72 0.60 -51.71 -0.03 -2.75 16 15 C -0.11 -3.58 4.31 31.17 0.13 -3.44 16 16 C 0.12 4.63 7.27 86.71 0.63 5.26 16 17 N -0.62 -30.70 3.38 -687.12 -2.32 -33.02 16 18 C -0.23 -12.73 10.36 84.03 0.87 -11.86 16 19 H 0.08 4.05 7.85 -2.91 -0.02 4.02 16 20 C -0.06 -3.27 5.40 84.86 0.46 -2.81 16 21 N -0.94 -54.91 10.83 21.65 0.23 -54.68 16 22 Si 0.97 44.89 29.57 68.60 2.03 46.92 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 26 C 0.18 8.51 4.77 86.67 0.41 8.93 16 27 C 0.12 3.99 3.27 86.94 0.28 4.28 16 28 N -0.50 -15.34 10.12 -177.25 -1.79 -17.13 16 29 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 0.66 8.10 -2.38 -0.02 0.64 16 32 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 34 H 0.10 2.36 5.37 -2.54 -0.01 2.35 16 35 H 0.08 2.19 7.13 -2.20 -0.02 2.17 16 36 H 0.10 1.94 8.20 -2.01 -0.02 1.92 16 37 H 0.04 1.17 8.18 -2.12 -0.02 1.15 16 38 H 0.05 1.34 8.25 -1.36 -0.01 1.33 16 39 H 0.07 1.91 5.92 -2.31 -0.01 1.90 16 40 H 0.03 1.30 7.86 -2.11 -0.02 1.28 16 41 H 0.04 1.65 7.75 -2.10 -0.02 1.64 16 42 H 0.08 2.38 5.59 -2.62 -0.01 2.36 16 43 H 0.08 2.16 6.38 -2.13 -0.01 2.15 16 44 H 0.05 1.91 8.14 -2.42 -0.02 1.89 16 45 H 0.02 0.80 8.13 -2.44 -0.02 0.78 16 46 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 47 H 0.00 0.08 7.72 -2.46 -0.02 0.06 16 48 H 0.05 2.83 5.95 -2.47 -0.01 2.81 16 49 H 0.11 3.89 4.58 -28.55 -0.13 3.76 16 50 H 0.06 2.11 7.90 -2.38 -0.02 2.09 16 Total: -1.00 -74.36 379.22 3.17 -71.19 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.85 Total: 17.15 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 7.52 Total: 26.50 kcal Atomic # 7 Polarization: -133.13 SS G_CDS: -7.17 Total: -140.31 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.06 Total: -21.45 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -74.36 3.17 -71.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045935770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.616 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds