Wall clock time and date at job start Wed Apr 1 2020 04:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38174 * 120.50114 * 2 1 4 4 N 1.31804 * 120.89637 * 180.28432 * 3 2 1 5 5 C 1.31825 * 122.04255 * 359.71928 * 4 3 2 6 6 C 1.38121 * 120.90638 * 0.02562 * 5 4 3 7 7 C 1.39795 * 120.49902 * 179.74977 * 2 1 3 8 8 C 1.48148 * 120.92560 * 359.97438 * 7 2 1 9 9 O 1.21516 * 119.99375 * 45.19114 * 8 7 2 10 10 N 1.34777 * 120.00518 * 225.18863 * 8 7 2 11 11 C 1.47074 * 120.88419 * 185.83075 * 10 8 7 12 12 C 1.53239 * 108.52379 * 231.20841 * 11 10 8 13 13 N 1.46901 * 109.33628 * 306.17198 * 12 11 10 14 14 C 1.46902 * 110.99540 * 187.25095 * 13 12 11 15 15 H 1.08999 * 110.64478 * 295.95319 * 14 13 12 16 16 C 1.55162 * 110.71849 * 59.09853 * 14 13 12 17 17 C 1.54914 * 101.57765 * 153.86437 * 16 14 13 18 18 N 1.47424 * 104.83102 * 322.98547 * 17 16 14 19 19 C 1.36936 * 125.64523 * 204.09263 * 18 17 16 20 20 H 1.08000 * 120.00190 * 168.69950 * 19 18 17 21 21 C 1.38817 * 120.00176 * 348.69876 * 19 18 17 22 22 N 1.31618 * 119.99952 * 329.98364 * 21 19 18 23 23 Si 1.86805 * 119.99931 * 149.98489 * 21 19 18 24 24 H 1.48500 * 109.47204 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46706 * 239.99934 * 23 21 19 26 26 H 1.48498 * 109.47028 * 119.99963 * 23 21 19 27 27 C 1.47019 * 108.70358 * 24.36089 * 18 17 16 28 28 C 1.46894 * 111.26964 * 63.10441 * 13 12 11 29 29 C 1.47081 * 120.87649 * 5.85242 * 10 8 7 30 30 H 1.08998 * 109.47669 * 271.44240 * 1 2 3 31 31 H 1.09006 * 109.47044 * 31.44372 * 1 2 3 32 32 H 1.09000 * 109.46851 * 151.43599 * 1 2 3 33 33 H 1.08004 * 119.54991 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.54701 * 179.97438 * 5 4 3 35 35 H 1.07996 * 120.50155 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.62920 * 111.49439 * 11 10 8 37 37 H 1.09003 * 109.62385 * 350.92005 * 11 10 8 38 38 H 1.08997 * 109.49568 * 186.20647 * 12 11 10 39 39 H 1.09006 * 109.49237 * 66.12512 * 12 11 10 40 40 H 1.08994 * 111.00835 * 35.78829 * 16 14 13 41 41 H 1.08994 * 111.00168 * 271.93150 * 16 14 13 42 42 H 1.09004 * 110.35915 * 204.14951 * 17 16 14 43 43 H 1.08996 * 110.36905 * 81.83098 * 17 16 14 44 44 H 0.97003 * 119.99941 * 353.58668 * 22 21 19 45 45 H 1.09003 * 109.88021 * 118.12684 * 27 18 17 46 46 H 1.09002 * 109.88250 * 239.28964 * 27 18 17 47 47 H 1.08997 * 109.49801 * 56.85518 * 28 13 12 48 48 H 1.09009 * 109.49246 * 176.93352 * 28 13 12 49 49 H 1.08998 * 109.63208 * 248.49877 * 29 10 8 50 50 H 1.08996 * 109.62917 * 9.08760 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5263 1.1996 -0.0056 5 6 4.2334 0.0871 -0.0060 6 6 3.6137 -1.1473 -0.0009 7 6 2.2164 -1.2045 0.0053 8 6 1.5078 -2.5055 0.0115 9 8 0.5656 -2.6877 -0.7340 10 7 1.9081 -3.4870 0.8439 11 6 1.3033 -4.8260 0.7782 12 6 0.8571 -5.2284 2.1879 13 7 1.9928 -5.1043 3.1115 14 6 1.6553 -5.6428 4.4359 15 1 0.8569 -5.0603 4.8956 16 6 1.2553 -7.1386 4.3347 17 6 1.6117 -7.6523 5.7521 18 7 2.8430 -6.9284 6.1173 19 6 3.7763 -7.3494 7.0266 20 1 4.7294 -6.8461 7.0947 21 6 3.4974 -8.4232 7.8610 22 7 2.2574 -8.6651 8.2301 23 14 4.8820 -9.5249 8.4600 24 1 6.1728 -9.0433 7.9057 25 1 4.6378 -10.9177 8.0063 26 1 4.9359 -9.4898 9.9436 27 6 2.8996 -5.6766 5.3484 28 6 2.4497 -3.7118 3.2102 29 6 2.9612 -3.2473 1.8423 30 1 -0.3634 0.0259 1.0273 31 1 -0.3633 0.8768 -0.5361 32 1 -0.3633 -0.9026 -0.4914 33 1 1.6691 2.1264 -0.0004 34 1 5.3120 0.1415 -0.0111 35 1 4.1994 -2.0547 -0.0017 36 1 2.0375 -5.5418 0.4082 37 1 0.4402 -4.8056 0.1128 38 1 0.5074 -6.2606 2.1780 39 1 0.0494 -4.5733 2.5146 40 1 1.8449 -7.6501 3.5741 41 1 0.1887 -7.2452 4.1374 42 1 1.7952 -8.7265 5.7311 43 1 0.8111 -7.4170 6.4533 44 1 1.5516 -8.0419 7.9968 45 1 2.8873 -4.8238 6.0271 46 1 3.8039 -5.6558 4.7401 47 1 1.6199 -3.0779 3.5226 48 1 3.2550 -3.6441 3.9417 49 1 3.8547 -3.8112 1.5748 50 1 3.1941 -2.1832 1.8806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046028899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:09 Heat of formation + Delta-G solvation = 48.515898 kcal Electronic energy + Delta-G solvation = -30570.379280 eV Core-core repulsion = 26598.666447 eV Total energy + Delta-G solvation = -3971.712832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.32659 -39.87029 -38.70393 -36.95706 -34.64845 -33.92296 -32.78900 -32.06924 -31.31545 -29.28677 -28.39908 -27.71835 -26.24392 -24.74680 -24.39611 -23.61384 -22.61601 -21.71159 -20.12865 -19.97509 -19.56101 -18.07277 -17.57093 -17.14921 -16.62279 -15.82217 -15.77879 -15.43313 -15.30756 -15.02959 -14.84899 -14.57697 -14.22335 -13.98563 -13.85903 -13.76357 -13.43494 -13.29098 -13.11870 -13.06365 -12.62565 -12.54718 -12.25857 -12.01487 -11.87073 -11.72262 -11.52034 -11.35604 -10.72970 -10.64776 -10.57155 -10.45172 -10.36083 -10.20533 -10.08739 -10.04103 -9.72401 -9.57232 -9.36098 -9.07353 -8.40059 -8.32221 -6.97146 -6.12148 -3.10428 0.40743 0.62896 2.28845 2.54411 3.32582 3.51995 3.55164 3.68427 3.75241 3.90812 3.99906 4.33097 4.37313 4.53280 4.57924 4.62795 4.71995 4.84785 4.93652 4.98040 5.10083 5.12856 5.17318 5.19623 5.25273 5.28153 5.34796 5.37899 5.42291 5.46735 5.53255 5.62463 5.64211 5.65462 5.70093 5.81981 5.89741 6.03788 6.11541 6.17824 6.26469 6.29988 6.48499 6.52250 6.92908 6.95835 7.02071 7.05251 7.23339 7.48614 7.69430 7.77192 8.47320 9.00988 9.81360 10.35740 11.21728 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.002293 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.298233 B =12206.774614 C =12945.555398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C 0.096 3.904 4 N -0.468 5.468 5 C 0.090 3.910 6 C -0.138 4.138 7 C -0.086 4.086 8 C 0.563 3.437 9 O -0.530 6.530 10 N -0.602 5.602 11 C 0.117 3.883 12 C 0.041 3.959 13 N -0.524 5.524 14 C 0.072 3.928 15 H 0.044 0.956 16 C -0.126 4.126 17 C 0.146 3.854 18 N -0.602 5.602 19 C -0.335 4.335 20 H 0.067 0.933 21 C -0.026 4.026 22 N -0.918 5.918 23 Si 1.065 2.935 24 H -0.292 1.292 25 H -0.290 1.290 26 H -0.295 1.295 27 C 0.148 3.852 28 C 0.039 3.961 29 C 0.107 3.893 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.022 0.978 44 H 0.269 0.731 45 H 0.017 0.983 46 H 0.037 0.963 47 H 0.036 0.964 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 16.379 -18.321 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C -0.061 4.061 4 N -0.177 5.177 5 C -0.067 4.067 6 C -0.158 4.158 7 C -0.097 4.097 8 C 0.351 3.649 9 O -0.407 6.407 10 N -0.334 5.334 11 C -0.005 4.005 12 C -0.088 4.088 13 N -0.250 5.250 14 C -0.036 4.036 15 H 0.062 0.938 16 C -0.165 4.165 17 C 0.020 3.980 18 N -0.330 5.330 19 C -0.463 4.463 20 H 0.085 0.915 21 C -0.227 4.227 22 N -0.560 5.560 23 Si 0.895 3.105 24 H -0.218 1.218 25 H -0.216 1.216 26 H -0.223 1.223 27 C 0.022 3.978 28 C -0.089 4.089 29 C -0.016 4.016 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.161 0.839 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.080 0.920 45 H 0.035 0.965 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.113 0.887 49 H 0.102 0.898 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.756 15.381 -17.976 23.670 hybrid contribution -1.312 1.150 -0.317 1.773 sum -2.068 16.530 -18.293 24.742 Atomic orbital electron populations 1.21055 0.89504 1.05290 1.03138 1.21019 0.98135 0.92480 0.97208 1.22724 0.89797 0.97335 0.96258 1.67566 1.08238 1.31807 1.10040 1.22755 1.00675 0.87101 0.96134 1.22410 0.93563 1.00542 0.99325 1.20175 0.94110 0.93728 1.01692 1.18237 0.83059 0.83195 0.80383 1.90730 1.27717 1.81074 1.41189 1.48128 1.38899 1.11544 1.34867 1.21821 0.99422 0.81909 0.97308 1.22471 0.92079 1.02232 0.91975 1.62001 1.34627 1.17843 1.10480 1.22682 0.97534 0.95893 0.87500 0.93793 1.22898 0.99479 0.94117 0.99992 1.21515 0.89029 0.96987 0.90501 1.44520 1.23834 1.17801 1.46840 1.19774 0.94296 1.17236 1.14968 0.91487 1.25677 1.01468 0.99593 0.95945 1.70728 1.01573 1.41336 1.42337 0.83553 0.74640 0.76625 0.75708 1.21841 1.21650 1.22271 1.21228 0.94683 0.89777 0.92082 1.22476 1.00633 0.89141 0.96689 1.22141 0.90483 1.01632 0.87368 0.90771 0.90731 0.88514 0.82120 0.81971 0.83889 0.90137 0.88558 0.88853 0.94616 0.90588 0.92250 0.92604 0.96010 0.92002 0.96550 0.94463 0.94619 0.88716 0.89799 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 9.68 36.00 0.35 -0.75 16 2 C -0.09 -0.79 5.93 -104.07 -0.62 -1.41 16 3 C 0.10 0.82 10.86 -17.59 -0.19 0.62 16 4 N -0.47 -4.41 10.34 -13.30 -0.14 -4.54 16 5 C 0.09 0.70 11.17 -17.60 -0.20 0.50 16 6 C -0.14 -1.09 7.65 -39.02 -0.30 -1.39 16 7 C -0.09 -0.84 4.94 -104.64 -0.52 -1.36 16 8 C 0.56 6.46 6.92 -12.19 -0.08 6.37 16 9 O -0.53 -7.44 14.13 5.35 0.08 -7.36 16 10 N -0.60 -6.29 3.01 -173.46 -0.52 -6.81 16 11 C 0.12 1.23 6.61 -3.61 -0.02 1.21 16 12 C 0.04 0.47 5.45 -3.70 -0.02 0.45 16 13 N -0.52 -6.98 4.45 -224.14 -1.00 -7.98 16 14 C 0.07 1.19 2.64 -65.87 -0.17 1.01 16 15 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 16 C -0.13 -2.19 5.30 -24.58 -0.13 -2.32 16 17 C 0.15 3.34 5.24 -2.53 -0.01 3.33 16 18 N -0.60 -15.17 3.34 -170.06 -0.57 -15.74 16 19 C -0.34 -9.45 10.02 -15.06 -0.15 -9.60 16 20 H 0.07 1.89 7.99 -52.49 -0.42 1.47 16 21 C -0.03 -0.73 5.04 -17.43 -0.09 -0.82 16 22 N -0.92 -27.68 12.78 55.49 0.71 -26.97 16 23 Si 1.06 25.38 30.01 -169.99 -5.10 20.28 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.15 3.02 5.75 -3.06 -0.02 3.00 16 28 C 0.04 0.45 5.47 -3.70 -0.02 0.43 16 29 C 0.11 0.99 5.28 -3.60 -0.02 0.97 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.10 1.02 5.46 -51.93 -0.28 0.74 16 33 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.14 0.88 7.18 -52.49 -0.38 0.50 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.03 7.04 -51.93 -0.37 0.67 16 38 H 0.09 1.04 6.74 -51.93 -0.35 0.69 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 0.89 7.93 -51.93 -0.41 0.48 16 42 H 0.06 1.41 7.69 -51.93 -0.40 1.01 16 43 H 0.02 0.54 6.93 -51.93 -0.36 0.18 16 44 H 0.27 8.10 6.06 -40.82 -0.25 7.85 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.04 0.76 7.79 -51.93 -0.40 0.36 16 47 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.09 1.12 6.89 -51.92 -0.36 0.76 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.09 0.72 5.21 -51.93 -0.27 0.45 16 LS Contribution 385.60 15.07 5.81 5.81 Total: -1.00 -33.58 385.60 -10.63 -44.21 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.69 Total: -1.15 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.21 Total: 0.26 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -1.52 Total: -62.05 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.08 Total: -7.36 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.10 Total: 20.28 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.58 -10.63 -44.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046028899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.731 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds