Wall clock time and date at job start Wed Apr 1 2020 04:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38174 * 120.50114 * 2 1 4 4 N 1.31804 * 120.89637 * 180.28432 * 3 2 1 5 5 C 1.31825 * 122.04255 * 359.71928 * 4 3 2 6 6 C 1.38121 * 120.90638 * 0.02562 * 5 4 3 7 7 C 1.39795 * 120.49902 * 179.74977 * 2 1 3 8 8 C 1.48148 * 120.92560 * 359.97438 * 7 2 1 9 9 O 1.21516 * 119.99375 * 45.19114 * 8 7 2 10 10 N 1.34777 * 120.00518 * 225.18863 * 8 7 2 11 11 C 1.47074 * 120.88419 * 185.83075 * 10 8 7 12 12 C 1.53239 * 108.52379 * 231.20841 * 11 10 8 13 13 N 1.46901 * 109.33628 * 306.17198 * 12 11 10 14 14 C 1.46902 * 110.99540 * 187.25095 * 13 12 11 15 15 H 1.08999 * 110.64478 * 295.95319 * 14 13 12 16 16 C 1.55162 * 110.71849 * 59.09853 * 14 13 12 17 17 C 1.54914 * 101.57765 * 153.86437 * 16 14 13 18 18 N 1.47424 * 104.83102 * 322.98547 * 17 16 14 19 19 C 1.36936 * 125.64523 * 204.09263 * 18 17 16 20 20 H 1.08000 * 120.00190 * 168.69950 * 19 18 17 21 21 C 1.38817 * 120.00176 * 348.69876 * 19 18 17 22 22 N 1.31618 * 119.99952 * 329.98364 * 21 19 18 23 23 Si 1.86805 * 119.99931 * 149.98489 * 21 19 18 24 24 H 1.48500 * 109.47204 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46706 * 239.99934 * 23 21 19 26 26 H 1.48498 * 109.47028 * 119.99963 * 23 21 19 27 27 C 1.47019 * 108.70358 * 24.36089 * 18 17 16 28 28 C 1.46894 * 111.26964 * 63.10441 * 13 12 11 29 29 C 1.47081 * 120.87649 * 5.85242 * 10 8 7 30 30 H 1.08998 * 109.47669 * 271.44240 * 1 2 3 31 31 H 1.09006 * 109.47044 * 31.44372 * 1 2 3 32 32 H 1.09000 * 109.46851 * 151.43599 * 1 2 3 33 33 H 1.08004 * 119.54991 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.54701 * 179.97438 * 5 4 3 35 35 H 1.07996 * 120.50155 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.62920 * 111.49439 * 11 10 8 37 37 H 1.09003 * 109.62385 * 350.92005 * 11 10 8 38 38 H 1.08997 * 109.49568 * 186.20647 * 12 11 10 39 39 H 1.09006 * 109.49237 * 66.12512 * 12 11 10 40 40 H 1.08994 * 111.00835 * 35.78829 * 16 14 13 41 41 H 1.08994 * 111.00168 * 271.93150 * 16 14 13 42 42 H 1.09004 * 110.35915 * 204.14951 * 17 16 14 43 43 H 1.08996 * 110.36905 * 81.83098 * 17 16 14 44 44 H 0.97003 * 119.99941 * 353.58668 * 22 21 19 45 45 H 1.09003 * 109.88021 * 118.12684 * 27 18 17 46 46 H 1.09002 * 109.88250 * 239.28964 * 27 18 17 47 47 H 1.08997 * 109.49801 * 56.85518 * 28 13 12 48 48 H 1.09009 * 109.49246 * 176.93352 * 28 13 12 49 49 H 1.08998 * 109.63208 * 248.49877 * 29 10 8 50 50 H 1.08996 * 109.62917 * 9.08760 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5263 1.1996 -0.0056 5 6 4.2334 0.0871 -0.0060 6 6 3.6137 -1.1473 -0.0009 7 6 2.2164 -1.2045 0.0053 8 6 1.5078 -2.5055 0.0115 9 8 0.5656 -2.6877 -0.7340 10 7 1.9081 -3.4870 0.8439 11 6 1.3033 -4.8260 0.7782 12 6 0.8571 -5.2284 2.1879 13 7 1.9928 -5.1043 3.1115 14 6 1.6553 -5.6428 4.4359 15 1 0.8569 -5.0603 4.8956 16 6 1.2553 -7.1386 4.3347 17 6 1.6117 -7.6523 5.7521 18 7 2.8430 -6.9284 6.1173 19 6 3.7763 -7.3494 7.0266 20 1 4.7294 -6.8461 7.0947 21 6 3.4974 -8.4232 7.8610 22 7 2.2574 -8.6651 8.2301 23 14 4.8820 -9.5249 8.4600 24 1 6.1728 -9.0433 7.9057 25 1 4.6378 -10.9177 8.0063 26 1 4.9359 -9.4898 9.9436 27 6 2.8996 -5.6766 5.3484 28 6 2.4497 -3.7118 3.2102 29 6 2.9612 -3.2473 1.8423 30 1 -0.3634 0.0259 1.0273 31 1 -0.3633 0.8768 -0.5361 32 1 -0.3633 -0.9026 -0.4914 33 1 1.6691 2.1264 -0.0004 34 1 5.3120 0.1415 -0.0111 35 1 4.1994 -2.0547 -0.0017 36 1 2.0375 -5.5418 0.4082 37 1 0.4402 -4.8056 0.1128 38 1 0.5074 -6.2606 2.1780 39 1 0.0494 -4.5733 2.5146 40 1 1.8449 -7.6501 3.5741 41 1 0.1887 -7.2452 4.1374 42 1 1.7952 -8.7265 5.7311 43 1 0.8111 -7.4170 6.4533 44 1 1.5516 -8.0419 7.9968 45 1 2.8873 -4.8238 6.0271 46 1 3.8039 -5.6558 4.7401 47 1 1.6199 -3.0779 3.5226 48 1 3.2550 -3.6441 3.9417 49 1 3.8547 -3.8112 1.5748 50 1 3.1941 -2.1832 1.8806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046028899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:08 Heat of formation + Delta-G solvation = 26.545303 kcal Electronic energy + Delta-G solvation = -30571.331996 eV Core-core repulsion = 26598.666447 eV Total energy + Delta-G solvation = -3972.665549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.07838 -40.75016 -39.86774 -38.29276 -35.92110 -34.60087 -34.08699 -33.26780 -32.20817 -30.97370 -29.68566 -28.50814 -27.48003 -26.11413 -25.46924 -24.76285 -23.31851 -22.60377 -21.89423 -21.29563 -20.46655 -19.60888 -18.87356 -17.88984 -17.54247 -16.95128 -16.62566 -16.39510 -16.22915 -16.08016 -15.94840 -15.75241 -15.33054 -15.24196 -15.00718 -14.93560 -14.73248 -14.39803 -14.36995 -13.84609 -13.75427 -13.53219 -13.34887 -13.23795 -12.74489 -12.72447 -12.62120 -12.58181 -12.44847 -12.35392 -11.96422 -11.86817 -11.82884 -11.69834 -11.60283 -11.43318 -10.78956 -10.52162 -10.42364 -9.97309 -9.96095 -9.39491 -9.04506 -8.35486 -5.29719 -0.27693 0.03447 1.46397 1.58490 1.66319 1.73780 1.82986 2.57086 2.69066 2.74365 3.15037 3.16452 3.46446 3.53232 3.57543 3.73259 3.76076 3.78770 3.88294 3.93335 3.95513 4.12214 4.15011 4.19324 4.29006 4.36751 4.41053 4.44678 4.52573 4.55977 4.64224 4.65702 4.72417 4.76590 4.77862 4.81124 4.86031 4.88165 4.94911 5.01239 5.04744 5.08494 5.23390 5.29659 5.30476 5.59223 5.65210 5.91882 5.97697 6.17598 6.30173 6.85215 6.88431 6.88638 7.70420 8.27873 8.98414 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.002293 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.298233 B =12206.774614 C =12945.555398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.097 4.097 3 C 0.094 3.906 4 N -0.488 5.488 5 C 0.089 3.911 6 C -0.133 4.133 7 C -0.104 4.104 8 C 0.564 3.436 9 O -0.561 6.561 10 N -0.601 5.601 11 C 0.122 3.878 12 C 0.045 3.955 13 N -0.525 5.525 14 C 0.090 3.910 15 H 0.044 0.956 16 C -0.107 4.107 17 C 0.147 3.853 18 N -0.626 5.626 19 C -0.344 4.344 20 H 0.062 0.938 21 C -0.079 4.079 22 N -0.947 5.947 23 Si 1.117 2.883 24 H -0.272 1.272 25 H -0.287 1.287 26 H -0.291 1.291 27 C 0.148 3.852 28 C 0.038 3.962 29 C 0.114 3.886 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.183 0.817 34 H 0.190 0.810 35 H 0.162 0.838 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.031 0.969 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.023 0.977 43 H 0.002 0.998 44 H 0.255 0.745 45 H 0.010 0.990 46 H 0.041 0.959 47 H 0.032 0.968 48 H 0.091 0.909 49 H 0.098 0.902 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 17.402 -19.768 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.099 4.099 3 C -0.063 4.063 4 N -0.197 5.197 5 C -0.067 4.067 6 C -0.153 4.153 7 C -0.115 4.115 8 C 0.353 3.647 9 O -0.441 6.441 10 N -0.332 5.332 11 C -0.001 4.001 12 C -0.083 4.083 13 N -0.250 5.250 14 C -0.019 4.019 15 H 0.062 0.938 16 C -0.146 4.146 17 C 0.021 3.979 18 N -0.354 5.354 19 C -0.473 4.473 20 H 0.080 0.920 21 C -0.275 4.275 22 N -0.590 5.590 23 Si 0.941 3.059 24 H -0.197 1.197 25 H -0.214 1.214 26 H -0.219 1.219 27 C 0.023 3.977 28 C -0.090 4.090 29 C -0.008 4.008 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.200 0.800 34 H 0.207 0.793 35 H 0.180 0.820 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.050 0.950 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.041 0.959 43 H 0.019 0.981 44 H 0.065 0.935 45 H 0.028 0.972 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.110 0.890 49 H 0.116 0.884 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.497 16.437 -19.444 25.465 hybrid contribution -1.692 0.920 0.115 1.930 sum -1.195 17.357 -19.329 26.006 Atomic orbital electron populations 1.21003 0.89250 1.04970 1.03338 1.21173 0.98509 0.92699 0.97566 1.23049 0.89744 0.97906 0.95620 1.67623 1.08704 1.32690 1.10635 1.23228 1.01921 0.86591 0.94997 1.22595 0.92773 1.01468 0.98472 1.20217 0.95047 0.93059 1.03152 1.18493 0.82621 0.83726 0.79907 1.90717 1.29160 1.81684 1.42538 1.48186 1.38927 1.11357 1.34780 1.21776 0.99699 0.82188 0.96391 1.22494 0.91264 1.02635 0.91956 1.61962 1.35293 1.19058 1.08655 1.22359 0.95402 0.95521 0.88574 0.93841 1.22744 1.01359 0.94301 0.96150 1.21437 0.87771 0.95166 0.93486 1.44823 1.23954 1.20002 1.46599 1.20039 0.94760 1.17335 1.15121 0.91970 1.27073 1.02790 1.01098 0.96512 1.70845 1.02182 1.41613 1.44345 0.82858 0.72723 0.74841 0.75447 1.19683 1.21399 1.21857 1.21317 0.96764 0.87519 0.92102 1.22537 1.00395 0.87949 0.98144 1.22172 0.90275 1.02734 0.85604 0.90422 0.88780 0.90892 0.80033 0.79321 0.82048 0.89190 0.88809 0.88173 0.95045 0.90059 0.89331 0.95865 0.98052 0.93451 0.97204 0.94111 0.94999 0.89028 0.88430 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.68 71.23 0.69 -1.33 16 2 C -0.10 -1.65 5.93 -19.50 -0.12 -1.77 16 3 C 0.09 1.42 10.86 84.68 0.92 2.34 16 4 N -0.49 -8.14 10.34 -196.00 -2.03 -10.17 16 5 C 0.09 1.15 11.17 84.67 0.95 2.09 16 6 C -0.13 -1.77 7.65 22.63 0.17 -1.60 16 7 C -0.10 -1.87 4.94 -19.88 -0.10 -1.97 16 8 C 0.56 12.22 6.92 86.88 0.60 12.82 16 9 O -0.56 -15.55 14.13 -3.77 -0.05 -15.61 16 10 N -0.60 -11.39 3.01 -821.00 -2.47 -13.86 16 11 C 0.12 2.31 6.61 86.35 0.57 2.88 16 12 C 0.04 0.94 5.45 86.38 0.47 1.41 16 13 N -0.52 -12.89 4.45 -863.04 -3.84 -16.73 16 14 C 0.09 2.85 2.64 46.11 0.12 2.98 16 15 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 16 C -0.11 -3.59 5.30 31.99 0.17 -3.42 16 17 C 0.15 6.90 5.24 86.86 0.46 7.36 16 18 N -0.63 -31.97 3.34 -691.96 -2.31 -34.28 16 19 C -0.34 -19.66 10.02 84.03 0.84 -18.81 16 20 H 0.06 3.52 7.99 -2.91 -0.02 3.50 16 21 C -0.08 -4.58 5.04 84.86 0.43 -4.15 16 22 N -0.95 -58.58 12.78 21.65 0.28 -58.31 16 23 Si 1.12 51.46 30.01 68.60 2.06 53.52 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 27 C 0.15 5.97 5.75 86.73 0.50 6.47 16 28 C 0.04 0.80 5.47 86.39 0.47 1.28 16 29 C 0.11 1.82 5.28 86.35 0.46 2.28 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.04 8.11 -2.38 -0.02 1.02 16 32 H 0.07 1.54 5.46 -2.39 -0.01 1.52 16 33 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 35 H 0.16 1.46 7.18 -2.91 -0.02 1.44 16 36 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.09 1.88 7.04 -2.39 -0.02 1.87 16 38 H 0.10 1.98 6.74 -2.39 -0.02 1.96 16 39 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.09 2.48 7.93 -2.39 -0.02 2.46 16 42 H 0.02 1.21 7.69 -2.38 -0.02 1.19 16 43 H 0.00 0.09 6.93 -2.39 -0.02 0.07 16 44 H 0.26 16.01 6.06 -92.71 -0.56 15.45 16 45 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.04 1.62 7.79 -2.39 -0.02 1.60 16 47 H 0.03 0.70 8.14 -2.39 -0.02 0.69 16 48 H 0.09 2.00 6.89 -2.38 -0.02 1.99 16 49 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 50 H 0.10 1.39 5.21 -2.39 -0.01 1.38 16 Total: -1.00 -74.34 385.60 0.38 -73.96 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.15 Total: 12.63 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 7.60 Total: 8.84 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -10.37 Total: -133.35 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.05 Total: -15.61 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.06 Total: 53.52 kcal Total: -74.34 0.38 -73.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046028899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.506 kcal (2) G-P(sol) polarization free energy of solvation -74.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds