Wall clock time and date at job start Wed Apr 1 2020 04:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38173 * 120.50449 * 2 1 4 4 N 1.31807 * 120.89219 * 180.28545 * 3 2 1 5 5 C 1.31818 * 122.04975 * 359.73570 * 4 3 2 6 6 C 1.38125 * 120.90039 * 0.02562 * 5 4 3 7 7 C 1.39799 * 120.49735 * 179.76639 * 2 1 3 8 8 C 1.48153 * 120.92224 * 0.02562 * 7 2 1 9 9 O 1.21507 * 120.00152 * 53.52615 * 8 7 2 10 10 N 1.34778 * 119.99567 * 233.53258 * 8 7 2 11 11 C 1.47083 * 120.87807 * 175.81835 * 10 8 7 12 12 C 1.53241 * 108.52313 * 231.16240 * 11 10 8 13 13 N 1.46904 * 109.33802 * 306.17166 * 12 11 10 14 14 C 1.46902 * 110.99754 * 187.25039 * 13 12 11 15 15 H 1.08996 * 110.88726 * 297.57576 * 14 13 12 16 16 C 1.55156 * 111.00096 * 173.64515 * 14 13 12 17 17 C 1.54324 * 102.94130 * 206.42402 * 16 14 13 18 18 N 1.47013 * 107.27084 * 22.19953 * 17 16 14 19 19 C 1.36943 * 125.65015 * 181.09516 * 18 17 16 20 20 H 1.07996 * 120.00154 * 179.97438 * 19 18 17 21 21 C 1.38814 * 119.99637 * 359.95383 * 19 18 17 22 22 N 1.31620 * 120.00176 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00036 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47188 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47535 * 120.00263 * 23 21 19 26 26 H 1.48500 * 109.47124 * 240.00261 * 23 21 19 27 27 C 1.47423 * 108.70675 * 1.05412 * 18 17 16 28 28 C 1.46893 * 111.26967 * 63.10140 * 13 12 11 29 29 C 1.47078 * 120.88505 * 355.79693 * 10 8 7 30 30 H 1.09000 * 109.47353 * 274.62233 * 1 2 3 31 31 H 1.09007 * 109.46773 * 34.61650 * 1 2 3 32 32 H 1.08997 * 109.47822 * 154.61832 * 1 2 3 33 33 H 1.07996 * 119.55200 * 0.04351 * 3 2 1 34 34 H 1.07998 * 119.55212 * 179.97438 * 5 4 3 35 35 H 1.07999 * 120.50072 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.62817 * 111.45206 * 11 10 8 37 37 H 1.09000 * 109.62707 * 350.87010 * 11 10 8 38 38 H 1.08996 * 109.49481 * 186.20804 * 12 11 10 39 39 H 1.09003 * 109.49449 * 66.12880 * 12 11 10 40 40 H 1.09001 * 110.72184 * 324.79495 * 16 14 13 41 41 H 1.09001 * 110.71465 * 88.06530 * 16 14 13 42 42 H 1.08995 * 109.88412 * 262.77711 * 17 16 14 43 43 H 1.09004 * 110.00607 * 141.68873 * 17 16 14 44 44 H 0.97002 * 120.00186 * 179.97438 * 22 21 19 45 45 H 1.09001 * 110.37087 * 217.03653 * 27 18 17 46 46 H 1.09002 * 110.36558 * 94.70791 * 27 18 17 47 47 H 1.09006 * 109.49104 * 56.85622 * 28 13 12 48 48 H 1.09001 * 109.49368 * 176.93284 * 28 13 12 49 49 H 1.09005 * 109.62235 * 248.54856 * 29 10 8 50 50 H 1.08993 * 109.62886 * 8.92991 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5263 1.1994 -0.0056 5 6 4.2334 0.0869 -0.0063 6 6 3.6136 -1.1475 -0.0016 7 6 2.2164 -1.2046 0.0049 8 6 1.5077 -2.5056 0.0096 9 8 0.6680 -2.7431 -0.8359 10 7 1.7942 -3.4255 0.9520 11 6 1.0397 -4.6856 1.0309 12 6 0.5535 -4.8726 2.4720 13 7 1.6979 -4.7754 3.3880 14 6 1.3039 -5.1188 4.7609 15 1 0.5572 -4.4197 5.1372 16 6 2.5399 -5.1714 5.6974 17 6 2.0948 -6.1526 6.8023 18 7 1.0161 -6.9799 6.2427 19 6 0.3339 -7.9610 6.9114 20 1 -0.4458 -8.5148 6.4096 21 6 0.6448 -8.2441 8.2344 22 7 1.5949 -7.5692 8.8461 23 14 -0.2852 -9.5829 9.1465 24 1 -1.2967 -10.1869 8.2424 25 1 0.6674 -10.6303 9.5944 26 1 -0.9663 -8.9953 10.3281 27 6 0.7896 -6.5778 4.8425 28 6 2.3117 -3.4420 3.3343 29 6 2.8699 -3.1963 1.9285 30 1 -0.3634 0.0828 1.0243 31 1 -0.3633 0.8458 -0.5838 32 1 -0.3634 -0.9284 -0.4405 33 1 1.6692 2.1263 0.0007 34 1 5.3120 0.1413 -0.0115 35 1 4.1992 -2.0549 -0.0027 36 1 1.6862 -5.5176 0.7517 37 1 0.1831 -4.6422 0.3582 38 1 0.0877 -5.8527 2.5745 39 1 -0.1731 -4.0970 2.7143 40 1 3.4100 -5.5573 5.1663 41 1 2.7480 -4.1870 6.1167 42 1 1.7267 -5.5973 7.6649 43 1 2.9316 -6.7852 7.0984 44 1 1.8119 -7.7668 9.7706 45 1 -0.2729 -6.6194 4.6029 46 1 1.3571 -7.2183 4.1674 47 1 1.5605 -2.6863 3.5645 48 1 3.1210 -3.3845 4.0622 49 1 3.6923 -3.8852 1.7356 50 1 3.2257 -2.1693 1.8469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046028901.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:13 Heat of formation + Delta-G solvation = 49.974458 kcal Electronic energy + Delta-G solvation = -30533.217457 eV Core-core repulsion = 26561.567873 eV Total energy + Delta-G solvation = -3971.649584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.29472 -39.81282 -38.57979 -36.77985 -34.46537 -33.92966 -32.76412 -31.93623 -31.25789 -29.28764 -28.35347 -27.61959 -26.21656 -24.99753 -24.04055 -23.75438 -22.63491 -21.62767 -19.98553 -19.89880 -19.49120 -18.05588 -17.15164 -16.91636 -16.61223 -15.79333 -15.66000 -15.42513 -15.23686 -14.93871 -14.63859 -14.54049 -14.51049 -14.08745 -13.89977 -13.75841 -13.37866 -13.11435 -12.97617 -12.60555 -12.55838 -12.31377 -12.13661 -11.99369 -11.84426 -11.75469 -11.41941 -11.29453 -10.90717 -10.85289 -10.61874 -10.21681 -10.11001 -10.08823 -10.02454 -9.98445 -9.70386 -9.68978 -9.35436 -9.02391 -8.61979 -8.23901 -6.84915 -5.73137 -3.06713 0.46993 0.63488 2.26711 2.58858 3.32079 3.38431 3.43932 3.46426 3.83566 3.93216 4.00982 4.34683 4.37657 4.49449 4.55289 4.66037 4.77475 4.90995 4.94822 5.03503 5.14331 5.18512 5.23102 5.27038 5.28796 5.38822 5.43840 5.46959 5.51152 5.55390 5.63728 5.65810 5.69990 5.80555 5.83685 5.87250 5.90426 6.14790 6.18593 6.24160 6.45222 6.46476 6.60755 6.69575 6.99972 7.10213 7.31038 7.49791 7.54432 7.60871 7.72687 7.80967 8.24141 9.20245 9.80555 10.46177 11.38648 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023720 B = 0.002203 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.150366 B =12706.333041 C =13196.905821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C 0.099 3.901 4 N -0.470 5.470 5 C 0.091 3.909 6 C -0.141 4.141 7 C -0.081 4.081 8 C 0.563 3.437 9 O -0.530 6.530 10 N -0.600 5.600 11 C 0.118 3.882 12 C 0.040 3.960 13 N -0.525 5.525 14 C 0.067 3.933 15 H 0.047 0.953 16 C -0.133 4.133 17 C 0.179 3.821 18 N -0.606 5.606 19 C -0.227 4.227 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.148 3.852 28 C 0.041 3.959 29 C 0.104 3.896 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.035 0.965 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.251 0.749 45 H 0.033 0.967 46 H 0.030 0.970 47 H 0.035 0.965 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.811 15.997 -17.955 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 C -0.059 4.059 4 N -0.178 5.178 5 C -0.065 4.065 6 C -0.161 4.161 7 C -0.093 4.093 8 C 0.350 3.650 9 O -0.407 6.407 10 N -0.333 5.333 11 C -0.004 4.004 12 C -0.088 4.088 13 N -0.250 5.250 14 C -0.041 4.041 15 H 0.065 0.935 16 C -0.172 4.172 17 C 0.054 3.946 18 N -0.333 5.333 19 C -0.355 4.355 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.021 3.979 28 C -0.088 4.088 29 C -0.019 4.019 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.111 0.889 49 H 0.101 0.899 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.143 16.196 -18.337 24.814 hybrid contribution -1.338 -0.906 0.968 1.884 sum 2.805 15.290 -17.369 23.310 Atomic orbital electron populations 1.20985 0.89542 1.05089 1.03033 1.20984 0.98060 0.92481 0.97657 1.22704 0.89792 0.97311 0.96082 1.67563 1.08226 1.31782 1.10254 1.22741 1.00637 0.87107 0.96045 1.22351 0.93490 1.00503 0.99786 1.20195 0.94193 0.93765 1.01104 1.18229 0.82246 0.83138 0.81358 1.90767 1.33743 1.78902 1.37288 1.48153 1.35578 1.18566 1.31009 1.21833 0.96965 0.84611 0.97016 1.22495 0.92261 1.02490 0.91603 1.61986 1.29033 1.26030 1.07999 1.22898 0.97280 0.98109 0.85850 0.93548 1.22929 0.96782 0.99912 0.97571 1.21130 0.91174 0.90547 0.91764 1.44423 1.40740 1.40993 1.07098 1.19097 1.13220 1.09545 0.93624 0.90396 1.24807 0.99008 0.99845 0.96869 1.69972 1.32674 1.42778 1.11567 0.86040 0.78871 0.81128 0.79698 1.20501 1.21722 1.21790 1.21472 0.96997 0.91010 0.88371 1.22431 0.99756 0.90214 0.96357 1.22157 0.89719 1.02287 0.87697 0.90614 0.90552 0.89224 0.82115 0.82003 0.83951 0.90135 0.88668 0.88668 0.94625 0.91429 0.92701 0.93747 0.93757 0.93809 0.94855 0.95239 0.94723 0.88908 0.89861 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.73 36.00 0.35 -0.72 16 2 C -0.09 -0.82 5.93 -104.07 -0.62 -1.44 16 3 C 0.10 0.83 10.88 -17.59 -0.19 0.64 16 4 N -0.47 -4.38 10.33 -13.31 -0.14 -4.51 16 5 C 0.09 0.69 11.17 -17.60 -0.20 0.50 16 6 C -0.14 -1.10 7.59 -39.02 -0.30 -1.39 16 7 C -0.08 -0.80 4.90 -104.64 -0.51 -1.32 16 8 C 0.56 6.55 6.69 -12.19 -0.08 6.47 16 9 O -0.53 -7.66 14.64 5.36 0.08 -7.58 16 10 N -0.60 -6.38 3.01 -173.46 -0.52 -6.90 16 11 C 0.12 1.29 6.58 -3.60 -0.02 1.26 16 12 C 0.04 0.49 5.48 -3.70 -0.02 0.47 16 13 N -0.53 -7.04 4.53 -223.78 -1.01 -8.05 16 14 C 0.07 1.13 2.72 -65.56 -0.18 0.95 16 15 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 16 C -0.13 -2.38 5.34 -24.90 -0.13 -2.51 16 17 C 0.18 4.27 5.38 -3.07 -0.02 4.25 16 18 N -0.61 -15.31 3.39 -170.08 -0.58 -15.88 16 19 C -0.23 -6.27 10.28 -15.06 -0.15 -6.43 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -26.93 10.31 55.49 0.57 -26.35 16 23 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.15 2.99 5.64 -2.53 -0.01 2.97 16 28 C 0.04 0.46 5.48 -3.71 -0.02 0.44 16 29 C 0.10 0.94 5.70 -3.60 -0.02 0.92 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.48 8.12 -51.92 -0.42 0.06 16 32 H 0.09 0.95 5.69 -51.93 -0.30 0.65 16 33 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.14 0.84 7.42 -52.49 -0.39 0.45 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.07 7.09 -51.93 -0.37 0.70 16 38 H 0.10 1.19 6.79 -51.93 -0.35 0.83 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.88 7.94 -51.93 -0.41 0.46 16 42 H 0.04 1.17 7.38 -51.93 -0.38 0.79 16 43 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.03 0.66 7.85 -51.93 -0.41 0.25 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 1.00 6.87 -51.93 -0.36 0.64 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.09 0.69 4.89 -51.93 -0.25 0.43 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -32.81 386.98 -10.82 -43.63 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.80 Total: -1.86 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -2.22 Total: 4.71 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -1.68 Total: -61.70 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.08 Total: -7.58 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.81 -10.82 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046028901.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.607 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds