Wall clock time and date at job start Wed Apr 1 2020 04:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38173 * 120.50449 * 2 1 4 4 N 1.31807 * 120.89219 * 180.28545 * 3 2 1 5 5 C 1.31818 * 122.04975 * 359.73570 * 4 3 2 6 6 C 1.38125 * 120.90039 * 0.02562 * 5 4 3 7 7 C 1.39799 * 120.49735 * 179.76639 * 2 1 3 8 8 C 1.48153 * 120.92224 * 0.02562 * 7 2 1 9 9 O 1.21507 * 120.00152 * 53.52615 * 8 7 2 10 10 N 1.34778 * 119.99567 * 233.53258 * 8 7 2 11 11 C 1.47083 * 120.87807 * 175.81835 * 10 8 7 12 12 C 1.53241 * 108.52313 * 231.16240 * 11 10 8 13 13 N 1.46904 * 109.33802 * 306.17166 * 12 11 10 14 14 C 1.46902 * 110.99754 * 187.25039 * 13 12 11 15 15 H 1.08996 * 110.88726 * 297.57576 * 14 13 12 16 16 C 1.55156 * 111.00096 * 173.64515 * 14 13 12 17 17 C 1.54324 * 102.94130 * 206.42402 * 16 14 13 18 18 N 1.47013 * 107.27084 * 22.19953 * 17 16 14 19 19 C 1.36943 * 125.65015 * 181.09516 * 18 17 16 20 20 H 1.07996 * 120.00154 * 179.97438 * 19 18 17 21 21 C 1.38814 * 119.99637 * 359.95383 * 19 18 17 22 22 N 1.31620 * 120.00176 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00036 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47188 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47535 * 120.00263 * 23 21 19 26 26 H 1.48500 * 109.47124 * 240.00261 * 23 21 19 27 27 C 1.47423 * 108.70675 * 1.05412 * 18 17 16 28 28 C 1.46893 * 111.26967 * 63.10140 * 13 12 11 29 29 C 1.47078 * 120.88505 * 355.79693 * 10 8 7 30 30 H 1.09000 * 109.47353 * 274.62233 * 1 2 3 31 31 H 1.09007 * 109.46773 * 34.61650 * 1 2 3 32 32 H 1.08997 * 109.47822 * 154.61832 * 1 2 3 33 33 H 1.07996 * 119.55200 * 0.04351 * 3 2 1 34 34 H 1.07998 * 119.55212 * 179.97438 * 5 4 3 35 35 H 1.07999 * 120.50072 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.62817 * 111.45206 * 11 10 8 37 37 H 1.09000 * 109.62707 * 350.87010 * 11 10 8 38 38 H 1.08996 * 109.49481 * 186.20804 * 12 11 10 39 39 H 1.09003 * 109.49449 * 66.12880 * 12 11 10 40 40 H 1.09001 * 110.72184 * 324.79495 * 16 14 13 41 41 H 1.09001 * 110.71465 * 88.06530 * 16 14 13 42 42 H 1.08995 * 109.88412 * 262.77711 * 17 16 14 43 43 H 1.09004 * 110.00607 * 141.68873 * 17 16 14 44 44 H 0.97002 * 120.00186 * 179.97438 * 22 21 19 45 45 H 1.09001 * 110.37087 * 217.03653 * 27 18 17 46 46 H 1.09002 * 110.36558 * 94.70791 * 27 18 17 47 47 H 1.09006 * 109.49104 * 56.85622 * 28 13 12 48 48 H 1.09001 * 109.49368 * 176.93284 * 28 13 12 49 49 H 1.09005 * 109.62235 * 248.54856 * 29 10 8 50 50 H 1.08993 * 109.62886 * 8.92991 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5263 1.1994 -0.0056 5 6 4.2334 0.0869 -0.0063 6 6 3.6136 -1.1475 -0.0016 7 6 2.2164 -1.2046 0.0049 8 6 1.5077 -2.5056 0.0096 9 8 0.6680 -2.7431 -0.8359 10 7 1.7942 -3.4255 0.9520 11 6 1.0397 -4.6856 1.0309 12 6 0.5535 -4.8726 2.4720 13 7 1.6979 -4.7754 3.3880 14 6 1.3039 -5.1188 4.7609 15 1 0.5572 -4.4197 5.1372 16 6 2.5399 -5.1714 5.6974 17 6 2.0948 -6.1526 6.8023 18 7 1.0161 -6.9799 6.2427 19 6 0.3339 -7.9610 6.9114 20 1 -0.4458 -8.5148 6.4096 21 6 0.6448 -8.2441 8.2344 22 7 1.5949 -7.5692 8.8461 23 14 -0.2852 -9.5829 9.1465 24 1 -1.2967 -10.1869 8.2424 25 1 0.6674 -10.6303 9.5944 26 1 -0.9663 -8.9953 10.3281 27 6 0.7896 -6.5778 4.8425 28 6 2.3117 -3.4420 3.3343 29 6 2.8699 -3.1963 1.9285 30 1 -0.3634 0.0828 1.0243 31 1 -0.3633 0.8458 -0.5838 32 1 -0.3634 -0.9284 -0.4405 33 1 1.6692 2.1263 0.0007 34 1 5.3120 0.1413 -0.0115 35 1 4.1992 -2.0549 -0.0027 36 1 1.6862 -5.5176 0.7517 37 1 0.1831 -4.6422 0.3582 38 1 0.0877 -5.8527 2.5745 39 1 -0.1731 -4.0970 2.7143 40 1 3.4100 -5.5573 5.1663 41 1 2.7480 -4.1870 6.1167 42 1 1.7267 -5.5973 7.6649 43 1 2.9316 -6.7852 7.0984 44 1 1.8119 -7.7668 9.7706 45 1 -0.2729 -6.6194 4.6029 46 1 1.3571 -7.2183 4.1674 47 1 1.5605 -2.6863 3.5645 48 1 3.1210 -3.3845 4.0622 49 1 3.6923 -3.8852 1.7356 50 1 3.2257 -2.1693 1.8469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046028901.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:12 Heat of formation + Delta-G solvation = 28.527486 kcal Electronic energy + Delta-G solvation = -30534.147468 eV Core-core repulsion = 26561.567873 eV Total energy + Delta-G solvation = -3972.579595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.04414 -40.67114 -39.75396 -38.13810 -35.73329 -34.60390 -33.97737 -33.26151 -32.12968 -31.00628 -29.59902 -28.42553 -27.55717 -26.23498 -25.30291 -24.76832 -23.31566 -22.54124 -21.76116 -21.23566 -20.40983 -19.01316 -18.73283 -17.87297 -17.50913 -17.01909 -16.51534 -16.42150 -16.31505 -15.96787 -15.94176 -15.90016 -15.33489 -15.21107 -14.77064 -14.65965 -14.39139 -14.31562 -13.98366 -13.90004 -13.73204 -13.61305 -13.35749 -13.21133 -12.92112 -12.78291 -12.69464 -12.59613 -12.42628 -12.29916 -11.96205 -11.83021 -11.69231 -11.61333 -11.51986 -11.43199 -10.76211 -10.71549 -10.39679 -9.95379 -9.93454 -9.33849 -8.90165 -7.85600 -5.21223 -0.20325 0.05339 1.42433 1.45956 1.46611 1.57019 1.77256 2.46956 2.69488 2.77432 3.17772 3.33479 3.48934 3.62393 3.74903 3.77715 3.79200 3.87478 3.94329 3.97002 4.09604 4.18173 4.25268 4.27873 4.36456 4.39733 4.44698 4.54009 4.60918 4.64916 4.69405 4.72753 4.74864 4.82164 4.83574 4.87890 4.95202 5.01244 5.06670 5.07723 5.18937 5.21621 5.30940 5.45172 5.61236 5.66482 5.76094 5.97566 6.05375 6.19163 6.23010 6.87105 6.91000 7.10250 7.77184 8.41164 9.24959 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023720 B = 0.002203 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.150366 B =12706.333041 C =13196.905821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C 0.096 3.904 4 N -0.490 5.490 5 C 0.091 3.909 6 C -0.135 4.135 7 C -0.100 4.100 8 C 0.563 3.437 9 O -0.565 6.565 10 N -0.600 5.600 11 C 0.124 3.876 12 C 0.044 3.956 13 N -0.523 5.523 14 C 0.087 3.913 15 H 0.038 0.962 16 C -0.114 4.114 17 C 0.185 3.815 18 N -0.629 5.629 19 C -0.240 4.240 20 H 0.082 0.918 21 C -0.067 4.067 22 N -0.951 5.951 23 Si 0.978 3.022 24 H -0.266 1.266 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.147 3.853 28 C 0.040 3.960 29 C 0.110 3.890 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.182 0.818 34 H 0.191 0.809 35 H 0.164 0.836 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.029 0.971 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.009 0.991 43 H 0.008 0.992 44 H 0.247 0.753 45 H 0.036 0.964 46 H 0.032 0.968 47 H 0.030 0.970 48 H 0.103 0.897 49 H 0.099 0.901 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 17.075 -19.234 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.104 4.104 3 C -0.061 4.061 4 N -0.198 5.198 5 C -0.065 4.065 6 C -0.155 4.155 7 C -0.111 4.111 8 C 0.352 3.648 9 O -0.445 6.445 10 N -0.331 5.331 11 C 0.002 3.998 12 C -0.085 4.085 13 N -0.248 5.248 14 C -0.022 4.022 15 H 0.056 0.944 16 C -0.152 4.152 17 C 0.060 3.940 18 N -0.356 5.356 19 C -0.369 4.369 20 H 0.100 0.900 21 C -0.260 4.260 22 N -0.600 5.600 23 Si 0.807 3.193 24 H -0.190 1.190 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.021 3.979 28 C -0.089 4.089 29 C -0.012 4.012 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.199 0.801 34 H 0.208 0.792 35 H 0.181 0.819 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.048 0.952 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.048 0.952 48 H 0.121 0.879 49 H 0.117 0.883 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.085 17.288 -19.648 26.660 hybrid contribution -1.625 -1.221 1.314 2.420 sum 3.461 16.067 -18.334 24.622 Atomic orbital electron populations 1.20940 0.89391 1.04519 1.03409 1.21129 0.98376 0.92735 0.98114 1.23013 0.89774 0.97816 0.95477 1.67624 1.08635 1.32722 1.10826 1.23239 1.01939 0.86524 0.94757 1.22563 0.92593 1.01560 0.98834 1.20216 0.95216 0.92922 1.02715 1.18513 0.81734 0.83672 0.80866 1.90748 1.35358 1.79621 1.38763 1.48222 1.35708 1.18174 1.31036 1.21725 0.97141 0.85218 0.95757 1.22469 0.91819 1.02080 0.92087 1.61949 1.29205 1.27844 1.05811 1.22527 0.96233 0.95667 0.87764 0.94360 1.22725 0.97355 0.99368 0.95782 1.20902 0.89542 0.90602 0.92949 1.44747 1.40905 1.40807 1.09099 1.19480 1.13273 1.10063 0.94131 0.90042 1.25653 1.00193 1.02296 0.97853 1.70189 1.34147 1.44267 1.11430 0.85011 0.77738 0.78322 0.78269 1.19009 1.21863 1.21935 1.21584 0.97368 0.93169 0.85758 1.22546 0.99742 0.88478 0.98096 1.22251 0.89303 1.03849 0.85796 0.90163 0.88703 0.91725 0.80092 0.79171 0.81877 0.89299 0.89188 0.89097 0.95226 0.90126 0.90256 0.97283 0.97379 0.94396 0.94605 0.95003 0.95197 0.87895 0.88284 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.73 71.23 0.69 -1.29 16 2 C -0.10 -1.71 5.93 -19.50 -0.12 -1.83 16 3 C 0.10 1.43 10.88 84.68 0.92 2.35 16 4 N -0.49 -7.93 10.33 -196.01 -2.03 -9.95 16 5 C 0.09 1.11 11.17 84.67 0.95 2.06 16 6 C -0.14 -1.71 7.59 22.63 0.17 -1.54 16 7 C -0.10 -1.79 4.90 -19.88 -0.10 -1.89 16 8 C 0.56 12.45 6.69 86.88 0.58 13.03 16 9 O -0.57 -16.29 14.64 -3.74 -0.05 -16.34 16 10 N -0.60 -11.59 3.01 -821.01 -2.47 -14.06 16 11 C 0.12 2.53 6.58 86.35 0.57 3.10 16 12 C 0.04 1.02 5.48 86.38 0.47 1.49 16 13 N -0.52 -12.92 4.53 -861.89 -3.90 -16.82 16 14 C 0.09 2.82 2.72 46.31 0.13 2.95 16 15 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 16 C -0.11 -3.92 5.34 31.78 0.17 -3.75 16 17 C 0.19 9.05 5.38 86.73 0.47 9.52 16 18 N -0.63 -32.26 3.39 -692.00 -2.35 -34.61 16 19 C -0.24 -13.51 10.28 84.03 0.86 -12.65 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 21 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 22 N -0.95 -57.27 10.31 21.65 0.22 -57.05 16 23 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 C 0.15 5.85 5.64 86.86 0.49 6.34 16 28 C 0.04 0.77 5.48 86.38 0.47 1.24 16 29 C 0.11 1.64 5.70 86.35 0.49 2.14 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.08 8.12 -2.38 -0.02 1.06 16 32 H 0.06 1.38 5.69 -2.39 -0.01 1.37 16 33 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.16 1.31 7.42 -2.91 -0.02 1.28 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.97 7.09 -2.39 -0.02 1.96 16 38 H 0.09 2.18 6.79 -2.39 -0.02 2.16 16 39 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.08 2.36 7.94 -2.39 -0.02 2.34 16 42 H 0.01 0.49 7.38 -2.39 -0.02 0.47 16 43 H 0.01 0.44 7.50 -2.38 -0.02 0.42 16 44 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 45 H 0.04 1.40 7.85 -2.39 -0.02 1.38 16 46 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 48 H 0.10 1.83 6.87 -2.39 -0.02 1.82 16 49 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 50 H 0.11 1.27 4.89 -2.39 -0.01 1.26 16 Total: -1.00 -73.24 386.98 0.07 -73.16 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.94 Total: 9.92 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.69 Total: 17.90 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -10.52 Total: -132.49 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.05 Total: -16.34 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -73.24 0.07 -73.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046028901.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.691 kcal (2) G-P(sol) polarization free energy of solvation -73.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds