Wall clock time and date at job start Wed Apr 1 2020 04:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32136 * 119.89832 * 2 1 4 4 C 1.32088 * 120.07312 * 179.76367 * 3 2 1 5 5 C 1.50685 * 120.06884 * 180.23203 * 4 3 2 6 6 C 1.39442 * 119.86493 * 0.50290 * 4 3 2 7 7 C 1.48154 * 120.09306 * 179.76599 * 6 4 3 8 8 O 1.21513 * 119.99690 * 74.77795 * 7 6 4 9 9 N 1.34780 * 120.00254 * 254.77039 * 7 6 4 10 10 C 1.46498 * 120.00060 * 174.95507 * 9 7 6 11 11 H 1.09001 * 109.31746 * 50.09294 * 10 9 7 12 12 C 1.53033 * 109.32428 * 290.45103 * 10 9 7 13 13 C 1.53590 * 109.02986 * 295.29840 * 12 10 9 14 14 H 1.09001 * 113.73707 * 168.49210 * 13 12 10 15 15 C 1.55432 * 106.33022 * 293.73702 * 13 12 10 16 16 C 1.55166 * 100.35540 * 73.35144 * 15 13 12 17 17 H 1.09000 * 112.48155 * 163.34581 * 16 15 13 18 18 C 1.52982 * 109.32418 * 169.73516 * 10 9 7 19 19 N 1.47788 * 104.87803 * 40.82621 * 16 15 13 20 20 C 1.36938 * 125.85920 * 153.22090 * 19 16 15 21 21 H 1.07996 * 119.99845 * 6.75893 * 20 19 16 22 22 C 1.38810 * 120.00054 * 186.75908 * 20 19 16 23 23 N 1.31620 * 120.00088 * 5.98941 * 22 20 19 24 24 Si 1.86805 * 119.99935 * 185.98458 * 22 20 19 25 25 H 1.48503 * 109.46859 * 90.00093 * 24 22 20 26 26 H 1.48501 * 109.46947 * 209.99993 * 24 22 20 27 27 H 1.48494 * 109.47037 * 330.00200 * 24 22 20 28 28 C 1.48744 * 107.40494 * 333.52408 * 19 16 15 29 29 N 1.32998 * 119.81099 * 359.75087 * 6 4 3 30 30 C 1.31807 * 119.92650 * 359.97438 * 29 6 4 31 31 C 1.50704 * 119.93646 * 180.02562 * 30 29 6 32 32 H 1.08997 * 109.47463 * 269.72740 * 1 2 3 33 33 H 1.09003 * 109.46720 * 149.72244 * 1 2 3 34 34 H 1.09004 * 109.46769 * 29.73431 * 1 2 3 35 35 H 1.09005 * 109.47653 * 274.86430 * 5 4 3 36 36 H 1.09006 * 109.47727 * 34.86119 * 5 4 3 37 37 H 1.08998 * 109.47520 * 154.86287 * 5 4 3 38 38 H 0.96996 * 119.99792 * 354.96121 * 9 7 6 39 39 H 1.09002 * 109.57587 * 54.95240 * 12 10 9 40 40 H 1.08997 * 109.57311 * 175.33878 * 12 10 9 41 41 H 1.09002 * 111.23423 * 315.58018 * 15 13 12 42 42 H 1.09001 * 111.27752 * 191.14893 * 15 13 12 43 43 H 1.09005 * 109.53460 * 185.05983 * 18 10 9 44 44 H 1.08997 * 109.53669 * 305.29064 * 18 10 9 45 45 H 0.97002 * 119.99591 * 184.96550 * 23 22 20 46 46 H 1.09002 * 109.84335 * 241.62319 * 28 19 16 47 47 H 1.09000 * 109.94007 * 120.48999 * 28 19 16 48 48 H 1.09000 * 109.46907 * 264.52272 * 31 30 29 49 49 H 1.08998 * 109.46997 * 24.52478 * 31 30 29 50 50 H 1.08995 * 109.46443 * 144.52863 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1495 0.0047 5 6 4.2375 2.4559 0.0100 6 6 4.1846 -0.0576 -0.0009 7 6 5.6662 -0.0589 -0.0009 8 8 6.2739 0.2121 1.0158 9 7 6.3399 -0.3609 -1.1285 10 6 7.8007 -0.2550 -1.1597 11 1 8.2187 -0.7812 -0.3014 12 6 8.2030 1.2200 -1.0946 13 6 7.7035 1.9317 -2.3607 14 1 7.7710 3.0184 -2.3088 15 6 8.5031 1.3249 -3.5474 16 6 7.8312 -0.0698 -3.6523 17 1 8.0380 -0.5617 -4.6027 18 6 8.3269 -0.8898 -2.4482 19 7 6.3897 0.1874 -3.4518 20 6 5.3631 -0.5757 -3.9406 21 1 5.5747 -1.5113 -4.4368 22 6 4.0507 -0.1468 -3.7983 23 7 3.7982 1.0453 -3.3006 24 14 2.6427 -1.2613 -4.3131 25 1 2.2309 -2.1029 -3.1610 26 1 1.4929 -0.4332 -4.7573 27 1 3.0852 -2.1338 -5.4303 28 6 6.2679 1.4235 -2.6335 29 7 3.5167 -1.2076 -0.0060 30 6 2.1986 -1.2025 -0.0052 31 6 1.4415 -2.5056 -0.0104 32 1 -0.3634 -0.0049 1.0276 33 1 -0.3633 -0.8875 -0.5182 34 1 -0.3633 0.8924 -0.5097 35 1 4.3468 2.8165 -1.0129 36 1 3.6855 3.1901 0.5969 37 1 5.2236 2.3064 0.4497 38 1 5.8574 -0.6481 -1.9195 39 1 7.7512 1.6835 -0.2176 40 1 9.2884 1.3001 -1.0340 41 1 9.5622 1.2356 -3.3053 42 1 8.3569 1.9032 -4.4597 43 1 9.4168 -0.8938 -2.4339 44 1 7.9587 -1.9127 -2.5274 45 1 2.8821 1.3171 -3.1339 46 1 5.7681 1.1962 -1.6919 47 1 5.7037 2.1781 -3.1816 48 1 1.1735 -2.7660 -1.0343 49 1 2.0676 -3.2912 0.4124 50 1 0.5357 -2.4017 0.5870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047109770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:19 Heat of formation + Delta-G solvation = 78.036856 kcal Electronic energy + Delta-G solvation = -34015.068753 eV Core-core repulsion = 30044.636045 eV Total energy + Delta-G solvation = -3970.432707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.16287 -40.35069 -37.86007 -34.50951 -33.97811 -33.59326 -33.14931 -30.83764 -30.43447 -29.87112 -28.68823 -27.81500 -25.78190 -25.20808 -23.29022 -23.23192 -22.11137 -21.23101 -19.87783 -19.60796 -18.76774 -17.74629 -17.36936 -16.60660 -15.57824 -15.35116 -14.87658 -14.79063 -14.56994 -14.17282 -13.65492 -13.61356 -13.16424 -12.94572 -12.90420 -12.78507 -12.56649 -12.47964 -12.28507 -12.26629 -11.96159 -11.91332 -11.81081 -11.72536 -11.69656 -11.57323 -11.46563 -11.05254 -10.95755 -10.91596 -10.67273 -10.31828 -10.18833 -9.86826 -9.79788 -9.67282 -9.56972 -9.35292 -8.84770 -8.52086 -8.29499 -7.57743 -6.98583 -5.88646 -3.30492 1.14429 1.62911 3.14821 3.25100 3.32041 3.32934 3.75208 4.10286 4.31397 4.40989 4.70602 4.83802 5.06454 5.15935 5.22263 5.24157 5.32287 5.44074 5.53099 5.56471 5.59947 5.64176 5.73491 5.75151 5.78084 5.84066 5.87443 5.88937 6.04742 6.05634 6.11306 6.12866 6.16390 6.22502 6.25327 6.30688 6.41657 6.52688 6.56677 6.64889 6.75762 6.83225 6.86257 6.89562 7.33761 7.42942 7.53062 7.69767 7.75225 8.03662 8.24347 8.50425 8.95298 9.11166 9.57759 10.26659 11.14757 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.006213 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.599845 B = 4505.539974 C = 5459.271230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.087 3.913 3 N -0.436 5.436 4 C 0.149 3.851 5 C -0.108 4.108 6 C 0.066 3.934 7 C 0.572 3.428 8 O -0.562 6.562 9 N -0.673 5.673 10 C 0.158 3.842 11 H 0.065 0.935 12 C -0.123 4.123 13 C -0.121 4.121 14 H 0.078 0.922 15 C -0.126 4.126 16 C 0.148 3.852 17 H 0.066 0.934 18 C -0.141 4.141 19 N -0.594 5.594 20 C -0.253 4.253 21 H 0.080 0.920 22 C 0.009 3.991 23 N -0.895 5.895 24 Si 0.889 3.111 25 H -0.281 1.281 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.137 3.863 29 N -0.408 5.408 30 C 0.065 3.935 31 C -0.097 4.097 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.441 0.559 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.254 0.746 46 H 0.074 0.926 47 H 0.053 0.947 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.416 -1.108 4.405 4.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.054 4.054 3 N -0.152 5.152 4 C 0.009 3.991 5 C -0.166 4.166 6 C -0.077 4.077 7 C 0.355 3.645 8 O -0.442 6.442 9 N -0.339 5.339 10 C 0.053 3.947 11 H 0.083 0.917 12 C -0.161 4.161 13 C -0.140 4.140 14 H 0.096 0.904 15 C -0.165 4.165 16 C 0.040 3.960 17 H 0.084 0.916 18 C -0.181 4.181 19 N -0.321 5.321 20 C -0.381 4.381 21 H 0.098 0.902 22 C -0.191 4.191 23 N -0.540 5.540 24 Si 0.719 3.281 25 H -0.208 1.208 26 H -0.215 1.215 27 H -0.204 1.204 28 C 0.014 3.986 29 N -0.124 5.124 30 C -0.078 4.078 31 C -0.155 4.155 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.298 0.702 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.071 0.929 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.572 -0.901 4.923 5.038 hybrid contribution -0.998 -0.699 -0.850 1.486 sum -0.426 -1.601 4.073 4.397 Atomic orbital electron populations 1.20692 0.88334 1.03804 1.02864 1.22106 0.97939 0.89138 0.96240 1.68088 1.07961 1.28519 1.10585 1.21828 0.89681 0.95729 0.91902 1.20851 0.98928 0.92062 1.04765 1.21739 0.95767 0.90160 1.00051 1.17652 0.85086 0.77695 0.84071 1.90697 1.68697 1.51639 1.33208 1.47701 1.07437 1.63119 1.15682 1.20698 0.80844 0.95746 0.97456 0.91711 1.22010 0.99903 0.95686 0.98550 1.22753 0.98904 0.98218 0.94129 0.90360 1.22968 0.97700 0.97534 0.98275 1.21615 0.85958 0.93521 0.94886 0.91614 1.22531 0.99370 1.00129 0.96068 1.45337 0.99271 1.28118 1.59370 1.19079 0.84765 1.00312 1.33922 0.90199 1.24760 0.97025 0.96265 1.01042 1.69950 1.18846 1.16974 1.48189 0.86434 0.82829 0.80052 0.78780 1.20810 1.21518 1.20430 1.22503 0.90869 0.88238 0.97021 1.68155 1.08128 1.28478 1.07613 1.21895 0.90331 0.96444 0.99084 1.20677 0.98952 0.92803 1.03094 0.90298 0.90446 0.90210 0.87930 0.90809 0.90373 0.70199 0.91417 0.92012 0.92065 0.92064 0.91578 0.91926 0.93589 0.90876 0.92874 0.90276 0.90425 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 9.40 36.01 0.34 -0.95 16 2 C 0.09 1.58 6.79 -82.28 -0.56 1.02 16 3 N -0.44 -8.69 10.34 -5.24 -0.05 -8.75 16 4 C 0.15 3.12 6.76 -82.04 -0.55 2.57 16 5 C -0.11 -2.03 8.92 36.00 0.32 -1.71 16 6 C 0.07 1.47 6.33 -82.84 -0.52 0.94 16 7 C 0.57 12.76 4.56 -12.19 -0.06 12.70 16 8 O -0.56 -13.07 15.33 5.35 0.08 -12.99 16 9 N -0.67 -14.38 2.77 -54.64 -0.15 -14.53 16 10 C 0.16 2.91 2.73 -67.92 -0.19 2.72 16 11 H 0.06 1.19 7.97 -51.93 -0.41 0.77 16 12 C -0.12 -2.10 5.12 -26.41 -0.14 -2.24 16 13 C -0.12 -2.15 4.33 -88.12 -0.38 -2.54 16 14 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 15 C -0.13 -2.08 6.18 -24.29 -0.15 -2.23 16 16 C 0.15 2.74 4.25 -65.62 -0.28 2.46 16 17 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.14 -2.36 5.42 -26.28 -0.14 -2.50 16 19 N -0.59 -13.21 1.79 -160.03 -0.29 -13.50 16 20 C -0.25 -6.27 8.56 -15.06 -0.13 -6.40 16 21 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 22 C 0.01 0.22 5.38 -17.43 -0.09 0.12 16 23 N -0.90 -22.95 10.60 55.49 0.59 -22.36 16 24 Si 0.89 20.75 29.56 -169.99 -5.03 15.72 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 C 0.14 2.97 3.95 -1.90 -0.01 2.97 16 29 N -0.41 -8.83 10.37 -5.88 -0.06 -8.89 16 30 C 0.06 1.22 6.79 -82.42 -0.56 0.66 16 31 C -0.10 -1.39 9.19 36.01 0.33 -1.06 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.87 6.80 -51.93 -0.35 0.52 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.10 2.03 7.80 -51.93 -0.41 1.63 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.48 6.41 -51.93 -0.33 1.14 16 38 H 0.44 10.19 3.89 -40.82 -0.16 10.04 16 39 H 0.07 1.25 6.98 -51.93 -0.36 0.89 16 40 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 41 H 0.06 0.86 7.74 -51.93 -0.40 0.45 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.92 8.00 -51.93 -0.42 0.50 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.25 6.69 8.32 -40.82 -0.34 6.35 16 46 H 0.07 1.62 2.31 -58.39 -0.13 1.49 16 47 H 0.05 1.33 6.97 -51.93 -0.36 0.96 16 48 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.08 0.82 7.02 -51.93 -0.36 0.46 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -28.97 376.01 -9.48 -38.45 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.47 Total: 14.65 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -2.77 Total: 6.53 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: 0.04 Total: -68.03 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.97 -9.48 -38.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047109770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.483 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds