Wall clock time and date at job start Wed Apr 1 2020 04:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32136 * 119.89832 * 2 1 4 4 C 1.32088 * 120.07312 * 179.76367 * 3 2 1 5 5 C 1.50685 * 120.06884 * 180.23203 * 4 3 2 6 6 C 1.39442 * 119.86493 * 0.50290 * 4 3 2 7 7 C 1.48154 * 120.09306 * 179.76599 * 6 4 3 8 8 O 1.21513 * 119.99690 * 74.77795 * 7 6 4 9 9 N 1.34780 * 120.00254 * 254.77039 * 7 6 4 10 10 C 1.46498 * 120.00060 * 174.95507 * 9 7 6 11 11 H 1.09001 * 109.31746 * 50.09294 * 10 9 7 12 12 C 1.53033 * 109.32428 * 290.45103 * 10 9 7 13 13 C 1.53590 * 109.02986 * 295.29840 * 12 10 9 14 14 H 1.09001 * 113.73707 * 168.49210 * 13 12 10 15 15 C 1.55432 * 106.33022 * 293.73702 * 13 12 10 16 16 C 1.55166 * 100.35540 * 73.35144 * 15 13 12 17 17 H 1.09000 * 112.48155 * 163.34581 * 16 15 13 18 18 C 1.52982 * 109.32418 * 169.73516 * 10 9 7 19 19 N 1.47788 * 104.87803 * 40.82621 * 16 15 13 20 20 C 1.36938 * 125.85920 * 153.22090 * 19 16 15 21 21 H 1.07996 * 119.99845 * 6.75893 * 20 19 16 22 22 C 1.38810 * 120.00054 * 186.75908 * 20 19 16 23 23 N 1.31620 * 120.00088 * 5.98941 * 22 20 19 24 24 Si 1.86805 * 119.99935 * 185.98458 * 22 20 19 25 25 H 1.48503 * 109.46859 * 90.00093 * 24 22 20 26 26 H 1.48501 * 109.46947 * 209.99993 * 24 22 20 27 27 H 1.48494 * 109.47037 * 330.00200 * 24 22 20 28 28 C 1.48744 * 107.40494 * 333.52408 * 19 16 15 29 29 N 1.32998 * 119.81099 * 359.75087 * 6 4 3 30 30 C 1.31807 * 119.92650 * 359.97438 * 29 6 4 31 31 C 1.50704 * 119.93646 * 180.02562 * 30 29 6 32 32 H 1.08997 * 109.47463 * 269.72740 * 1 2 3 33 33 H 1.09003 * 109.46720 * 149.72244 * 1 2 3 34 34 H 1.09004 * 109.46769 * 29.73431 * 1 2 3 35 35 H 1.09005 * 109.47653 * 274.86430 * 5 4 3 36 36 H 1.09006 * 109.47727 * 34.86119 * 5 4 3 37 37 H 1.08998 * 109.47520 * 154.86287 * 5 4 3 38 38 H 0.96996 * 119.99792 * 354.96121 * 9 7 6 39 39 H 1.09002 * 109.57587 * 54.95240 * 12 10 9 40 40 H 1.08997 * 109.57311 * 175.33878 * 12 10 9 41 41 H 1.09002 * 111.23423 * 315.58018 * 15 13 12 42 42 H 1.09001 * 111.27752 * 191.14893 * 15 13 12 43 43 H 1.09005 * 109.53460 * 185.05983 * 18 10 9 44 44 H 1.08997 * 109.53669 * 305.29064 * 18 10 9 45 45 H 0.97002 * 119.99591 * 184.96550 * 23 22 20 46 46 H 1.09002 * 109.84335 * 241.62319 * 28 19 16 47 47 H 1.09000 * 109.94007 * 120.48999 * 28 19 16 48 48 H 1.09000 * 109.46907 * 264.52272 * 31 30 29 49 49 H 1.08998 * 109.46997 * 24.52478 * 31 30 29 50 50 H 1.08995 * 109.46443 * 144.52863 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1495 0.0047 5 6 4.2375 2.4559 0.0100 6 6 4.1846 -0.0576 -0.0009 7 6 5.6662 -0.0589 -0.0009 8 8 6.2739 0.2121 1.0158 9 7 6.3399 -0.3609 -1.1285 10 6 7.8007 -0.2550 -1.1597 11 1 8.2187 -0.7812 -0.3014 12 6 8.2030 1.2200 -1.0946 13 6 7.7035 1.9317 -2.3607 14 1 7.7710 3.0184 -2.3088 15 6 8.5031 1.3249 -3.5474 16 6 7.8312 -0.0698 -3.6523 17 1 8.0380 -0.5617 -4.6027 18 6 8.3269 -0.8898 -2.4482 19 7 6.3897 0.1874 -3.4518 20 6 5.3631 -0.5757 -3.9406 21 1 5.5747 -1.5113 -4.4368 22 6 4.0507 -0.1468 -3.7983 23 7 3.7982 1.0453 -3.3006 24 14 2.6427 -1.2613 -4.3131 25 1 2.2309 -2.1029 -3.1610 26 1 1.4929 -0.4332 -4.7573 27 1 3.0852 -2.1338 -5.4303 28 6 6.2679 1.4235 -2.6335 29 7 3.5167 -1.2076 -0.0060 30 6 2.1986 -1.2025 -0.0052 31 6 1.4415 -2.5056 -0.0104 32 1 -0.3634 -0.0049 1.0276 33 1 -0.3633 -0.8875 -0.5182 34 1 -0.3633 0.8924 -0.5097 35 1 4.3468 2.8165 -1.0129 36 1 3.6855 3.1901 0.5969 37 1 5.2236 2.3064 0.4497 38 1 5.8574 -0.6481 -1.9195 39 1 7.7512 1.6835 -0.2176 40 1 9.2884 1.3001 -1.0340 41 1 9.5622 1.2356 -3.3053 42 1 8.3569 1.9032 -4.4597 43 1 9.4168 -0.8938 -2.4339 44 1 7.9587 -1.9127 -2.5274 45 1 2.8821 1.3171 -3.1339 46 1 5.7681 1.1962 -1.6919 47 1 5.7037 2.1781 -3.1816 48 1 1.1735 -2.7660 -1.0343 49 1 2.0676 -3.2912 0.4124 50 1 0.5357 -2.4017 0.5870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047109770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:18 Heat of formation + Delta-G solvation = 61.290842 kcal Electronic energy + Delta-G solvation = -34015.794914 eV Core-core repulsion = 30044.636045 eV Total energy + Delta-G solvation = -3971.158869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.68653 -41.83585 -39.48205 -35.96806 -35.53741 -35.21409 -34.73508 -32.42893 -32.01131 -31.25144 -30.04155 -29.25214 -27.31282 -26.81787 -24.86346 -24.64849 -23.59504 -22.67148 -21.47001 -21.19291 -20.27221 -19.25419 -19.02868 -18.26602 -17.16194 -16.93360 -16.38102 -16.34127 -16.15403 -15.76472 -15.31738 -15.09630 -14.56082 -14.40976 -14.22990 -13.98858 -13.92072 -13.91542 -13.81418 -13.56896 -13.42385 -13.37772 -13.28691 -13.16074 -13.09689 -13.04124 -12.78795 -12.75611 -12.65535 -12.54492 -12.24441 -11.94843 -11.78008 -11.61111 -11.35992 -11.21431 -11.08932 -10.82905 -10.69709 -10.04307 -9.74700 -9.21123 -8.77896 -7.79360 -5.19842 -0.33744 0.11887 1.36590 1.39524 1.43569 1.49854 2.23479 2.44060 2.61799 3.03804 3.27843 3.33722 3.43879 3.60913 3.72479 3.81962 3.93902 3.99785 4.05228 4.14455 4.23469 4.35176 4.44941 4.46616 4.54970 4.62317 4.64343 4.66308 4.70611 4.71381 4.78178 4.79386 4.87082 4.90807 4.95570 5.00691 5.07174 5.12086 5.14595 5.27064 5.33495 5.40448 5.47310 5.51191 5.56466 5.77304 5.82472 5.90951 6.20634 6.26799 6.74536 6.81855 7.08128 7.38591 7.74996 8.43730 9.19494 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.006213 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.599845 B = 4505.539974 C = 5459.271230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.085 3.915 3 N -0.450 5.450 4 C 0.133 3.867 5 C -0.097 4.097 6 C 0.036 3.964 7 C 0.570 3.430 8 O -0.583 6.583 9 N -0.676 5.676 10 C 0.146 3.854 11 H 0.066 0.934 12 C -0.114 4.114 13 C -0.117 4.117 14 H 0.090 0.910 15 C -0.112 4.112 16 C 0.136 3.864 17 H 0.069 0.931 18 C -0.129 4.129 19 N -0.606 5.606 20 C -0.254 4.254 21 H 0.076 0.924 22 C -0.028 4.028 23 N -0.900 5.900 24 Si 0.925 3.075 25 H -0.279 1.279 26 H -0.300 1.300 27 H -0.276 1.276 28 C 0.138 3.862 29 N -0.434 5.434 30 C 0.052 3.948 31 C -0.095 4.095 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.433 0.567 39 H 0.048 0.952 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.108 0.892 44 H 0.051 0.949 45 H 0.240 0.760 46 H 0.069 0.931 47 H 0.010 0.990 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.908 -1.826 4.659 5.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.058 4.058 3 N -0.165 5.165 4 C -0.006 4.006 5 C -0.154 4.154 6 C -0.106 4.106 7 C 0.353 3.647 8 O -0.465 6.465 9 N -0.340 5.340 10 C 0.041 3.959 11 H 0.084 0.916 12 C -0.152 4.152 13 C -0.136 4.136 14 H 0.108 0.892 15 C -0.150 4.150 16 C 0.030 3.970 17 H 0.087 0.913 18 C -0.169 4.169 19 N -0.333 5.333 20 C -0.382 4.382 21 H 0.094 0.906 22 C -0.226 4.226 23 N -0.546 5.546 24 Si 0.755 3.245 25 H -0.206 1.206 26 H -0.227 1.227 27 H -0.201 1.201 28 C 0.014 3.986 29 N -0.151 5.151 30 C -0.091 4.091 31 C -0.152 4.152 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.288 0.712 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.126 0.874 44 H 0.070 0.930 45 H 0.049 0.951 46 H 0.086 0.914 47 H 0.028 0.972 48 H 0.098 0.902 49 H 0.098 0.902 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.131 -1.619 5.165 5.529 hybrid contribution -1.213 -0.533 -0.956 1.634 sum -0.082 -2.152 4.208 4.727 Atomic orbital electron populations 1.20891 0.84537 1.04906 1.05146 1.22987 1.00361 0.88408 0.94046 1.68161 1.07545 1.29637 1.11193 1.22007 0.90356 0.95913 0.92356 1.20728 0.98767 0.92043 1.03901 1.21778 0.95828 0.90899 1.02046 1.17784 0.85461 0.77421 0.84026 1.90653 1.69247 1.52824 1.33759 1.47825 1.08755 1.62471 1.14925 1.21022 0.79373 0.96994 0.98463 0.91561 1.21950 1.01933 0.94188 0.97112 1.22726 0.96521 0.99063 0.95340 0.89154 1.22926 0.99376 0.95484 0.97260 1.21894 0.84019 0.95302 0.95801 0.91328 1.22450 1.01691 0.98778 0.93985 1.45448 1.00596 1.27969 1.59297 1.19194 0.85661 1.00393 1.32956 0.90620 1.25180 0.98344 0.97132 1.01957 1.70129 1.17656 1.17630 1.49162 0.85865 0.81117 0.79032 0.78531 1.20567 1.22687 1.20094 1.22407 0.93122 0.87052 0.95972 1.68146 1.09761 1.28603 1.08602 1.22725 0.89784 0.98708 0.97919 1.20838 1.00055 0.90470 1.03874 0.87177 0.88158 0.90266 0.89607 0.88773 0.91092 0.71176 0.93287 0.88266 0.88129 0.92660 0.87404 0.92970 0.95058 0.91373 0.97181 0.90242 0.90235 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.27 9.40 71.24 0.67 -1.60 16 2 C 0.08 2.98 6.79 42.63 0.29 3.27 16 3 N -0.45 -18.07 10.34 -170.49 -1.76 -19.83 16 4 C 0.13 5.73 6.76 42.81 0.29 6.02 16 5 C -0.10 -3.78 8.92 71.23 0.64 -3.15 16 6 C 0.04 1.64 6.33 41.89 0.26 1.90 16 7 C 0.57 26.10 4.56 86.88 0.40 26.49 16 8 O -0.58 -27.78 15.33 -3.76 -0.06 -27.84 16 9 N -0.68 -29.21 2.77 -445.09 -1.23 -30.45 16 10 C 0.15 5.18 2.73 45.00 0.12 5.31 16 11 H 0.07 2.34 7.97 -2.39 -0.02 2.32 16 12 C -0.11 -3.66 5.12 30.80 0.16 -3.50 16 13 C -0.12 -4.02 4.33 -9.18 -0.04 -4.06 16 14 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 15 C -0.11 -3.37 6.18 32.17 0.20 -3.17 16 16 C 0.14 4.80 4.25 45.78 0.19 4.99 16 17 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 18 C -0.13 -4.01 5.42 30.89 0.17 -3.84 16 19 N -0.61 -27.06 1.79 -660.21 -1.18 -28.24 16 20 C -0.25 -12.73 8.56 84.03 0.72 -12.01 16 21 H 0.08 3.78 7.84 -2.91 -0.02 3.75 16 22 C -0.03 -1.47 5.38 84.86 0.46 -1.01 16 23 N -0.90 -47.79 10.60 21.65 0.23 -47.56 16 24 Si 0.92 42.99 29.56 68.60 2.03 45.02 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 C 0.14 6.10 3.95 86.53 0.34 6.44 16 29 N -0.43 -19.12 10.37 -172.52 -1.79 -20.91 16 30 C 0.05 1.92 6.79 42.68 0.29 2.21 16 31 C -0.09 -2.49 9.19 71.24 0.65 -1.84 16 32 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.10 1.89 6.80 -2.39 -0.02 1.87 16 34 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.09 3.62 7.80 -2.38 -0.02 3.60 16 36 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 37 H 0.07 2.82 6.41 -2.39 -0.02 2.80 16 38 H 0.43 20.39 3.89 -92.71 -0.36 20.03 16 39 H 0.05 1.77 6.98 -2.39 -0.02 1.76 16 40 H 0.10 2.47 7.97 -2.39 -0.02 2.45 16 41 H 0.10 2.28 7.74 -2.39 -0.02 2.26 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.11 2.48 8.00 -2.38 -0.02 2.46 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.24 13.14 8.32 -92.71 -0.77 12.36 16 46 H 0.07 3.12 2.31 -15.14 -0.03 3.08 16 47 H 0.01 0.52 6.97 -2.39 -0.02 0.50 16 48 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.12 2.07 7.02 -2.39 -0.02 2.05 16 Total: -1.00 -66.47 376.01 2.62 -63.84 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: 0.58 Total: 43.53 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 5.81 Total: 22.44 kcal Atomic # 7 Polarization: -141.26 SS G_CDS: -5.73 Total: -146.99 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.06 Total: -27.84 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.47 2.62 -63.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047109770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.133 kcal (2) G-P(sol) polarization free energy of solvation -66.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds