Wall clock time and date at job start Wed Apr 1 2020 03:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31887 * 118.94941 * 2 1 4 4 C 1.32137 * 120.96211 * 179.97438 * 3 2 1 5 5 C 1.39963 * 118.92672 * 0.02562 * 4 3 2 6 6 C 1.47833 * 120.93829 * 180.02562 * 5 4 3 7 7 O 1.21557 * 119.99336 * 184.54590 * 6 5 4 8 8 N 1.34775 * 120.00248 * 4.53948 * 6 5 4 9 9 C 1.46499 * 120.00170 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47310 * 180.02562 * 9 8 6 11 11 H 1.09008 * 109.43058 * 299.46574 * 10 9 8 12 12 C 1.53142 * 109.43520 * 59.37162 * 10 9 8 13 13 C 1.53708 * 108.87714 * 66.17934 * 12 10 9 14 14 H 1.08999 * 112.10127 * 187.60841 * 13 12 10 15 15 C 1.54608 * 107.83156 * 312.22665 * 13 12 10 16 16 C 1.54826 * 104.65030 * 88.54891 * 15 13 12 17 17 C 1.54601 * 104.65637 * 0.02562 * 16 15 13 18 18 H 1.08998 * 112.69498 * 147.18834 * 17 16 15 19 19 C 1.53140 * 109.43748 * 179.59905 * 10 9 8 20 20 N 1.48294 * 107.27430 * 64.00579 * 13 12 10 21 21 C 1.36928 * 128.21366 * 107.39971 * 20 13 12 22 22 H 1.08007 * 120.00559 * 215.78114 * 21 20 13 23 23 C 1.38810 * 120.00270 * 35.77413 * 21 20 13 24 24 N 1.31615 * 120.00360 * 176.77374 * 23 21 20 25 25 Si 1.86809 * 119.99629 * 356.77866 * 23 21 20 26 26 H 1.48504 * 109.46565 * 275.98205 * 25 23 21 27 27 H 1.48495 * 109.47070 * 35.98142 * 25 23 21 28 28 H 1.48497 * 109.47048 * 155.98816 * 25 23 21 29 29 C 1.39929 * 118.11808 * 0.26788 * 5 4 3 30 30 C 1.50703 * 120.53486 * 179.71097 * 29 5 4 31 31 N 1.31848 * 118.95672 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46849 * 90.00177 * 1 2 3 33 33 H 1.08990 * 109.47038 * 209.99831 * 1 2 3 34 34 H 1.08996 * 109.47447 * 330.00602 * 1 2 3 35 35 H 1.08007 * 120.53526 * 179.97438 * 4 3 2 36 36 H 0.97001 * 120.00095 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.47058 * 59.99556 * 9 8 6 38 38 H 1.09001 * 109.46879 * 300.00198 * 9 8 6 39 39 H 1.08998 * 109.57599 * 306.36390 * 12 10 9 40 40 H 1.09006 * 109.56891 * 185.99385 * 12 10 9 41 41 H 1.08998 * 110.38400 * 207.48290 * 15 13 12 42 42 H 1.08999 * 110.37831 * 329.84815 * 15 13 12 43 43 H 1.09008 * 110.32986 * 241.26230 * 16 15 13 44 44 H 1.09005 * 110.52555 * 118.84255 * 16 15 13 45 45 H 1.09009 * 109.57274 * 53.63699 * 19 10 9 46 46 H 1.08997 * 109.57529 * 173.88010 * 19 10 9 47 47 H 0.97006 * 119.99581 * 180.02562 * 24 23 21 48 48 H 1.08997 * 109.47519 * 92.50994 * 30 29 5 49 49 H 1.09001 * 109.47140 * 212.51885 * 30 29 5 50 50 H 1.09000 * 109.47002 * 332.50755 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2005 0.0005 5 6 4.1855 0.0000 0.0005 6 6 5.6639 0.0000 0.0016 7 8 6.2716 -1.0494 -0.0818 8 7 6.3377 1.1635 0.0950 9 6 7.8027 1.1635 0.0956 10 6 8.3126 2.6014 0.2116 11 1 7.9571 3.1820 -0.6397 12 6 7.7883 3.2249 1.5083 13 6 8.4187 2.4916 2.7031 14 1 7.9825 2.8034 3.6521 15 6 8.2796 0.9723 2.4531 16 6 9.5499 0.5888 1.6553 17 6 10.3311 1.9142 1.5029 18 1 11.4112 1.7678 1.4998 19 6 9.8440 2.5997 0.2221 20 7 9.8800 2.7383 2.6501 21 6 10.6336 3.5412 3.4640 22 1 11.4703 4.0896 3.0570 23 6 10.3222 3.6503 4.8123 24 7 11.0839 4.3714 5.6074 25 14 8.8220 2.7736 5.4983 26 1 7.6154 3.6103 5.2765 27 1 8.6532 1.4689 4.8096 28 1 9.0050 2.5450 6.9541 29 6 3.4661 -1.2001 -0.0058 30 6 4.1857 -2.5242 -0.0127 31 7 2.1454 -1.1537 -0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3634 0.8900 0.5137 35 1 3.9817 2.1495 0.0001 36 1 5.8527 2.0009 0.1619 37 1 8.1664 0.7223 -0.8324 38 1 8.1657 0.5803 0.9419 39 1 6.7038 3.1246 1.5493 40 1 8.0608 4.2798 1.5424 41 1 8.2456 0.4332 3.3998 42 1 7.3858 0.7647 1.8647 43 1 9.2775 0.1935 0.6767 44 1 10.1430 -0.1397 2.2083 45 1 10.2146 2.0566 -0.6474 46 1 10.2105 3.6258 0.1951 47 1 10.8664 4.4473 6.5497 48 1 4.3196 -2.8704 1.0121 49 1 3.5979 -3.2544 -0.5690 50 1 5.1602 -2.4056 -0.4864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048573483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:21 Heat of formation + Delta-G solvation = 146.194668 kcal Electronic energy + Delta-G solvation = -31679.221962 eV Core-core repulsion = 27711.744799 eV Total energy + Delta-G solvation = -3967.477163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.89247 -41.35626 -39.12940 -35.41171 -34.52522 -33.90921 -32.89360 -31.76607 -30.92648 -30.74314 -29.49917 -28.88026 -26.69151 -24.37942 -23.78693 -23.55690 -22.61252 -21.14587 -21.04012 -20.07092 -19.03913 -18.18866 -17.96538 -17.23160 -16.39998 -16.15278 -15.97261 -15.59345 -15.35848 -14.66043 -14.24261 -13.99796 -13.67869 -13.57357 -13.36943 -13.32400 -13.26509 -12.82378 -12.77415 -12.71018 -12.56605 -12.49129 -12.23478 -11.98794 -11.83816 -11.69518 -11.63336 -11.14006 -10.88643 -10.86209 -10.48867 -10.33524 -10.10812 -9.87859 -9.80693 -9.77969 -9.64005 -9.60763 -9.48967 -9.28529 -8.65035 -8.42253 -6.93390 -5.98663 -3.46803 0.11316 0.68931 2.61626 2.97097 3.25787 3.38773 3.43334 3.43710 3.49075 3.66183 4.02525 4.40283 4.46459 4.60401 4.75728 4.77935 5.01218 5.03802 5.07925 5.12937 5.15169 5.28810 5.29932 5.41903 5.45074 5.45935 5.54541 5.56743 5.61905 5.69271 5.71311 5.82063 5.87624 5.95439 6.03411 6.07619 6.15850 6.18471 6.28253 6.36057 6.45858 6.54039 6.55184 6.58911 6.61293 6.75479 6.80605 6.91317 7.32526 7.68175 7.82946 8.02849 8.29695 8.75198 9.61322 10.26421 11.16184 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015873 B = 0.003161 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.522964 B = 8854.533962 C = 9472.020673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.338 3.662 3 N -0.527 5.527 4 C 0.189 3.811 5 C -0.254 4.254 6 C 0.566 3.434 7 O -0.527 6.527 8 N -0.713 5.713 9 C 0.001 3.999 10 C -0.083 4.083 11 H 0.059 0.941 12 C -0.127 4.127 13 C 0.136 3.864 14 H 0.067 0.933 15 C -0.168 4.168 16 C -0.162 4.162 17 C 0.154 3.846 18 H 0.079 0.921 19 C -0.122 4.122 20 N -0.597 5.597 21 C -0.241 4.241 22 H 0.087 0.913 23 C 0.030 3.970 24 N -0.914 5.914 25 Si 0.889 3.111 26 H -0.289 1.289 27 H -0.253 1.253 28 H -0.307 1.307 29 C 0.241 3.759 30 C -0.133 4.133 31 N -0.526 5.526 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.171 0.829 36 H 0.393 0.607 37 H 0.057 0.943 38 H 0.197 0.803 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.069 0.931 47 H 0.264 0.736 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.543 -9.060 -13.982 23.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 N -0.242 5.242 4 C 0.022 3.978 5 C -0.261 4.261 6 C 0.352 3.648 7 O -0.406 6.406 8 N -0.364 5.364 9 C -0.117 4.117 10 C -0.102 4.102 11 H 0.078 0.922 12 C -0.166 4.166 13 C 0.030 3.970 14 H 0.085 0.915 15 C -0.206 4.206 16 C -0.200 4.200 17 C 0.047 3.953 18 H 0.097 0.903 19 C -0.162 4.162 20 N -0.320 5.320 21 C -0.369 4.369 22 H 0.104 0.896 23 C -0.170 4.170 24 N -0.556 5.556 25 Si 0.722 3.278 26 H -0.217 1.217 27 H -0.179 1.179 28 H -0.235 1.235 29 C 0.095 3.905 30 C -0.190 4.190 31 N -0.242 5.242 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.188 0.812 36 H 0.229 0.771 37 H 0.075 0.925 38 H 0.212 0.788 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.941 -9.630 -13.769 23.860 hybrid contribution -0.348 0.542 0.438 0.779 sum -17.289 -9.088 -13.331 23.648 Atomic orbital electron populations 1.20643 0.85304 1.04542 1.04159 1.23534 0.98494 0.83375 0.87414 1.68299 1.09609 1.30122 1.16159 1.23467 0.89756 0.97678 0.86923 1.21623 0.96338 0.96366 1.11794 1.17684 0.85691 0.84348 0.77107 1.90624 1.69258 1.30354 1.50368 1.46274 1.08956 1.08061 1.73107 1.25304 0.77312 1.01284 1.07817 1.21191 0.97070 0.94140 0.97766 0.92215 1.22206 0.97679 1.01048 0.95707 1.21811 0.87690 0.92139 0.95371 0.91513 1.23631 0.98139 0.98535 1.00314 1.23430 0.96867 0.99620 1.00102 1.21516 0.97305 0.88677 0.87797 0.90257 1.22054 0.93476 1.02023 0.98677 1.45326 1.00624 1.51158 1.34879 1.18545 1.11076 1.19614 0.87640 0.89571 1.25311 0.98015 0.98110 0.95592 1.69734 1.38135 1.42796 1.04966 0.86876 0.82512 0.81661 0.76752 1.21691 1.17852 1.23521 1.22043 0.88660 0.95795 0.84029 1.21458 1.02619 0.90358 1.04525 1.68265 1.09317 1.30076 1.16497 0.89220 0.89312 0.89258 0.81219 0.77142 0.92481 0.78831 0.93668 0.91147 0.91780 0.88710 0.88769 0.91843 0.92625 0.91209 0.92624 0.89351 0.90590 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.31 36.01 0.37 -0.23 16 2 C 0.34 3.62 7.64 -157.07 -1.20 2.42 16 3 N -0.53 -5.85 10.32 -10.39 -0.11 -5.96 16 4 C 0.19 1.94 10.80 -16.77 -0.18 1.76 16 5 C -0.25 -2.92 5.91 -104.69 -0.62 -3.54 16 6 C 0.57 7.07 7.50 -12.34 -0.09 6.97 16 7 O -0.53 -7.67 13.28 5.32 0.07 -7.60 16 8 N -0.71 -8.12 4.30 -61.26 -0.26 -8.38 16 9 C 0.00 0.02 2.70 -4.04 -0.01 0.00 16 10 C -0.08 -1.13 2.77 -90.48 -0.25 -1.38 16 11 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 12 C -0.13 -2.03 5.27 -26.29 -0.14 -2.17 16 13 C 0.14 2.69 2.80 -65.73 -0.18 2.51 16 14 H 0.07 1.48 3.06 -51.93 -0.16 1.33 16 15 C -0.17 -2.92 5.44 -24.92 -0.14 -3.05 16 16 C -0.16 -2.60 5.74 -24.93 -0.14 -2.75 16 17 C 0.15 2.78 4.29 -66.00 -0.28 2.50 16 18 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 19 C -0.12 -1.84 5.35 -26.55 -0.14 -1.98 16 20 N -0.60 -13.32 2.53 -153.06 -0.39 -13.70 16 21 C -0.24 -6.55 10.83 -15.06 -0.16 -6.71 16 22 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 23 C 0.03 0.84 5.50 -17.43 -0.10 0.75 16 24 N -0.91 -27.75 13.97 55.49 0.78 -26.97 16 25 Si 0.89 21.95 24.64 -169.99 -4.19 17.77 16 26 H -0.29 -7.01 6.93 56.52 0.39 -6.62 16 27 H -0.25 -5.85 4.32 56.52 0.24 -5.60 16 28 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 29 C 0.24 2.87 6.86 -81.82 -0.56 2.30 16 30 C -0.13 -1.40 9.53 36.01 0.34 -1.05 16 31 N -0.53 -6.18 10.25 -6.67 -0.07 -6.25 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.17 1.24 6.56 -52.48 -0.34 0.90 16 36 H 0.39 3.69 5.43 -40.82 -0.22 3.47 16 37 H 0.06 0.73 8.01 -51.93 -0.42 0.31 16 38 H 0.20 2.80 1.12 -165.77 -0.19 2.61 16 39 H 0.04 0.61 6.67 -51.93 -0.35 0.26 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.20 6.46 -51.93 -0.34 0.87 16 42 H 0.10 1.46 3.90 -51.93 -0.20 1.26 16 43 H 0.09 1.31 4.83 -51.92 -0.25 1.06 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.13 1.48 5.03 -51.97 -0.26 1.22 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -32.18 363.92 -9.27 -41.45 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.10 Total: 7.81 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -3.49 Total: -3.65 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.05 Total: -61.26 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 0.07 Total: -7.60 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.19 Total: 17.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.18 -9.27 -41.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048573483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.649 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds