Wall clock time and date at job start Wed Apr 1 2020 03:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38809 * 120.42528 * 2 1 4 4 C 1.39499 * 118.25933 * 180.27934 * 3 2 1 5 5 C 1.48458 * 120.54768 * 179.71582 * 4 3 2 6 6 O 1.21477 * 120.00004 * 359.72796 * 5 4 3 7 7 N 1.34773 * 119.99826 * 179.71969 * 5 4 3 8 8 C 1.46499 * 119.99627 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47100 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.39621 * 300.12592 * 9 8 7 11 11 C 1.54482 * 109.73220 * 59.95693 * 9 8 7 12 12 C 1.53702 * 108.19078 * 65.84382 * 11 9 8 13 13 H 1.08994 * 112.10152 * 188.14677 * 12 11 9 14 14 C 1.54610 * 108.36867 * 312.50987 * 12 11 9 15 15 C 1.54311 * 104.75303 * 88.88723 * 14 12 11 16 16 C 1.54604 * 104.74948 * 0.02562 * 15 14 12 17 17 H 1.08999 * 112.69497 * 147.07651 * 16 15 14 18 18 C 1.53141 * 109.43724 * 180.23347 * 9 8 7 19 19 N 1.48290 * 104.26288 * 25.13397 * 16 15 14 20 20 C 1.36941 * 128.21181 * 138.40749 * 19 16 15 21 21 H 1.07998 * 119.99948 * 195.19131 * 20 19 16 22 22 C 1.38819 * 119.99712 * 15.17997 * 20 19 16 23 23 N 1.31622 * 120.00087 * 8.38785 * 22 20 19 24 24 Si 1.86804 * 119.99820 * 188.37952 * 22 20 19 25 25 H 1.48504 * 109.47120 * 0.02562 * 24 22 20 26 26 H 1.48490 * 109.46928 * 120.00480 * 24 22 20 27 27 H 1.48503 * 109.46904 * 240.00371 * 24 22 20 28 28 N 1.33095 * 118.90206 * 359.44294 * 4 3 2 29 29 C 1.31552 * 120.73707 * 0.27718 * 28 4 3 30 30 C 1.50701 * 119.04098 * 179.97438 * 29 28 4 31 31 N 1.31912 * 121.92105 * 0.02562 * 29 28 4 32 32 H 1.09003 * 109.47094 * 270.28647 * 1 2 3 33 33 H 1.09003 * 109.47394 * 30.28031 * 1 2 3 34 34 H 1.08997 * 109.46967 * 150.28146 * 1 2 3 35 35 H 1.08002 * 120.87163 * 0.02562 * 3 2 1 36 36 H 0.97001 * 120.00347 * 0.02562 * 7 5 4 37 37 H 1.09000 * 109.47161 * 60.00802 * 8 7 5 38 38 H 1.08994 * 109.47853 * 300.00000 * 8 7 5 39 39 H 1.08998 * 109.46884 * 306.49311 * 11 9 8 40 40 H 1.09000 * 110.44727 * 185.76454 * 11 9 8 41 41 H 1.09008 * 110.38068 * 207.70804 * 14 12 11 42 42 H 1.08996 * 110.38308 * 330.06569 * 14 12 11 43 43 H 1.08996 * 110.37928 * 241.18629 * 15 14 12 44 44 H 1.09002 * 110.37742 * 118.81999 * 15 14 12 45 45 H 1.09001 * 109.57475 * 174.00599 * 18 9 8 46 46 H 1.08995 * 109.57346 * 53.64262 * 18 9 8 47 47 H 0.96993 * 119.99802 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.47298 * 90.00021 * 30 29 28 49 49 H 1.08998 * 109.47533 * 209.99748 * 30 29 28 50 50 H 1.08999 * 109.47367 * 330.00253 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 -0.0060 5 6 4.4062 2.3933 -0.0126 6 8 3.8493 3.4729 -0.0179 7 7 5.7525 2.3295 -0.0127 8 6 6.5441 3.5621 -0.0198 9 6 8.0335 3.2117 -0.0189 10 1 8.2683 2.6313 0.8733 11 6 8.3736 2.3769 -1.2734 12 6 8.1722 3.2663 -2.5107 13 1 8.2569 2.7022 -3.4395 14 6 6.8056 3.9778 -2.3821 15 6 7.1117 5.2811 -1.6148 16 6 8.6347 5.2349 -1.3525 17 1 9.0926 6.2240 -1.3584 18 6 8.8603 4.5008 -0.0205 19 7 9.1648 4.3654 -2.4303 20 6 10.3018 4.5362 -3.1743 21 1 10.4432 3.9689 -4.0824 22 6 11.2723 5.4387 -2.7614 23 7 11.1816 6.0070 -1.5776 24 14 12.7074 5.8464 -3.8856 25 1 12.5780 5.0802 -5.1512 26 1 12.7037 7.3007 -4.1853 27 1 13.9810 5.4825 -3.2142 28 7 4.2027 -0.0444 -0.0001 29 6 3.4954 -1.1536 0.0057 30 6 4.2130 -2.4788 0.0116 31 7 2.1764 -1.1397 0.0054 32 1 -0.3633 0.0051 1.0277 33 1 -0.3634 0.8875 -0.5182 34 1 -0.3633 -0.8925 -0.5094 35 1 1.6912 2.1442 0.0004 36 1 6.1972 1.4675 -0.0087 37 1 6.3085 4.1504 0.8671 38 1 6.3080 4.1406 -0.9128 39 1 7.7063 1.5169 -1.3294 40 1 9.4078 2.0347 -1.2342 41 1 6.4011 4.2041 -3.3687 42 1 6.1075 3.3598 -1.8174 43 1 6.5644 5.3043 -0.6725 44 1 6.8579 6.1487 -2.2238 45 1 9.9172 4.2569 0.0874 46 1 8.5448 5.1380 0.8056 47 1 11.8599 6.6373 -1.2890 48 1 4.3866 -2.7933 1.0407 49 1 3.6031 -3.2246 -0.4982 50 1 5.1683 -2.3770 -0.5032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048574307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:25 Heat of formation + Delta-G solvation = 127.958230 kcal Electronic energy + Delta-G solvation = -31207.527282 eV Core-core repulsion = 27239.259328 eV Total energy + Delta-G solvation = -3968.267954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.63973 -41.08251 -38.88595 -35.10598 -34.66881 -33.72631 -32.72844 -31.39666 -30.67929 -29.66483 -29.57194 -28.48237 -26.99400 -24.87509 -23.37610 -23.17272 -22.52350 -20.76186 -20.66705 -19.42011 -18.92843 -18.28973 -17.41586 -16.96115 -16.04479 -15.85887 -15.68592 -15.38219 -14.94291 -14.72366 -14.35605 -13.95199 -13.77983 -13.55541 -13.42036 -13.01079 -12.85054 -12.73349 -12.64509 -12.60696 -12.55828 -11.99769 -11.71387 -11.54855 -11.34905 -11.24880 -11.22664 -10.87581 -10.80417 -10.77569 -10.55780 -10.43315 -10.09033 -9.82182 -9.70020 -9.61379 -9.51774 -9.45485 -9.34786 -9.20036 -8.63007 -8.19286 -6.79223 -5.76021 -3.10655 0.28323 0.59785 2.66176 3.00417 3.38020 3.44992 3.46525 3.52300 3.55017 3.64732 4.28078 4.47235 4.59947 4.63423 4.98836 5.09873 5.10618 5.18915 5.21975 5.24722 5.29832 5.42677 5.43668 5.47143 5.54266 5.60460 5.64223 5.76243 5.81870 5.91022 6.05451 6.06012 6.10655 6.15894 6.28840 6.39197 6.40789 6.51902 6.59287 6.65314 6.66104 6.75046 6.86865 6.95577 7.06430 7.11231 7.49799 7.58453 7.60701 7.74763 7.77589 8.16791 8.25311 9.14824 9.76725 10.56186 11.36238 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023297 B = 0.002544 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.576615 B =11002.390315 C =11464.769197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.178 3.822 3 C -0.180 4.180 4 C 0.143 3.857 5 C 0.560 3.440 6 O -0.530 6.530 7 N -0.692 5.692 8 C 0.000 4.000 9 C -0.086 4.086 10 H 0.051 0.949 11 C -0.123 4.123 12 C 0.150 3.850 13 H 0.063 0.937 14 C -0.162 4.162 15 C -0.173 4.173 16 C 0.180 3.820 17 H 0.113 0.887 18 C -0.109 4.109 19 N -0.584 5.584 20 C -0.220 4.220 21 H 0.074 0.926 22 C -0.006 4.006 23 N -0.912 5.912 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.292 1.292 28 N -0.500 5.500 29 C 0.320 3.680 30 C -0.085 4.085 31 N -0.511 5.511 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.406 0.594 37 H 0.054 0.946 38 H 0.198 0.802 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.041 0.959 47 H 0.252 0.748 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.993 -12.936 5.052 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.030 3.970 3 C -0.203 4.203 4 C -0.004 4.004 5 C 0.342 3.658 6 O -0.406 6.406 7 N -0.343 5.343 8 C -0.119 4.119 9 C -0.105 4.105 10 H 0.070 0.930 11 C -0.163 4.163 12 C 0.042 3.958 13 H 0.081 0.919 14 C -0.200 4.200 15 C -0.211 4.211 16 C 0.073 3.927 17 H 0.131 0.869 18 C -0.149 4.149 19 N -0.305 5.305 20 C -0.349 4.349 21 H 0.092 0.908 22 C -0.203 4.203 23 N -0.559 5.559 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 N -0.218 5.218 29 C 0.053 3.947 30 C -0.144 4.144 31 N -0.227 5.227 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.178 0.822 36 H 0.242 0.758 37 H 0.073 0.927 38 H 0.213 0.787 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.105 0.895 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.581 -12.840 5.015 22.341 hybrid contribution 0.689 0.436 -0.199 0.839 sum -16.892 -12.404 4.816 21.503 Atomic orbital electron populations 1.20811 0.87188 1.04403 1.03937 1.21834 0.97855 0.87656 0.89633 1.22794 0.94724 1.01318 1.01479 1.21818 0.92181 0.92591 0.93854 1.17755 0.82824 0.86772 0.78422 1.90789 1.71360 1.28049 1.50378 1.46277 1.05196 1.11856 1.70928 1.25407 0.91360 0.86446 1.08647 1.21508 0.92697 0.98778 0.97547 0.93034 1.22406 1.00728 0.96743 0.96399 1.21509 0.89018 0.90172 0.95083 0.91876 1.23397 0.99377 0.97600 0.99654 1.23518 1.01278 0.96571 0.99714 1.21549 0.87521 0.97124 0.86525 0.86942 1.22038 1.00141 0.93842 0.98834 1.45178 1.23379 1.21178 1.40739 1.19034 0.93458 1.20747 1.01624 0.90779 1.24825 0.97850 1.01116 0.96490 1.69854 1.35526 1.32661 1.17856 0.86099 0.82278 0.77876 0.79800 1.20571 1.21785 1.21884 1.68199 1.41639 0.98129 1.13803 1.23245 0.86462 0.94623 0.90390 1.20602 1.00208 0.89468 1.04092 1.68056 1.09796 1.30537 1.14319 0.89415 0.89707 0.89683 0.82249 0.75816 0.92742 0.78686 0.93954 0.91627 0.92946 0.89126 0.89434 0.92575 0.90303 0.94024 0.93778 0.89453 0.89465 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.22 36.01 0.37 -0.26 16 2 C 0.18 1.75 6.83 -82.23 -0.56 1.19 16 3 C -0.18 -2.00 9.41 -38.90 -0.37 -2.37 16 4 C 0.14 1.88 6.79 -82.64 -0.56 1.32 16 5 C 0.56 8.39 7.59 -12.05 -0.09 8.30 16 6 O -0.53 -9.14 16.43 5.39 0.09 -9.06 16 7 N -0.69 -10.02 4.39 -61.05 -0.27 -10.29 16 8 C 0.00 -0.01 2.68 -4.04 -0.01 -0.02 16 9 C -0.09 -1.49 2.77 -89.77 -0.25 -1.74 16 10 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.12 -2.19 5.40 -25.59 -0.14 -2.33 16 12 C 0.15 3.00 4.28 -65.72 -0.28 2.72 16 13 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 14 C -0.16 -2.92 5.72 -25.20 -0.14 -3.07 16 15 C -0.17 -3.27 5.72 -25.20 -0.14 -3.41 16 16 C 0.18 4.02 3.16 -65.71 -0.21 3.81 16 17 H 0.11 2.90 6.28 -51.93 -0.33 2.58 16 18 C -0.11 -2.22 5.30 -26.26 -0.14 -2.36 16 19 N -0.58 -14.01 2.82 -152.72 -0.43 -14.44 16 20 C -0.22 -5.89 10.38 -15.05 -0.16 -6.04 16 21 H 0.07 1.95 7.84 -52.49 -0.41 1.54 16 22 C -0.01 -0.16 5.43 -17.43 -0.09 -0.26 16 23 N -0.91 -25.35 10.60 55.49 0.59 -24.76 16 24 Si 0.91 21.57 29.56 -169.99 -5.03 16.55 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 N -0.50 -6.21 9.60 -7.32 -0.07 -6.28 16 29 C 0.32 3.53 7.64 -157.30 -1.20 2.33 16 30 C -0.09 -0.63 10.31 36.01 0.37 -0.26 16 31 N -0.51 -5.58 10.25 -7.00 -0.07 -5.65 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.16 1.58 7.74 -52.49 -0.41 1.17 16 36 H 0.41 5.46 6.72 -40.82 -0.27 5.18 16 37 H 0.05 0.90 8.00 -51.93 -0.42 0.48 16 38 H 0.20 3.34 1.12 -166.00 -0.19 3.16 16 39 H 0.04 0.65 6.76 -51.93 -0.35 0.30 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 42 H 0.09 1.53 3.95 -51.93 -0.21 1.32 16 43 H 0.09 1.54 4.84 -51.93 -0.25 1.29 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.87 8.04 -51.93 -0.42 1.45 16 46 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 381.84 15.07 5.75 5.75 Total: -1.00 -30.41 381.84 -10.49 -40.90 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -7.45 Total: 9.73 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -3.61 Total: -2.45 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.25 Total: -61.42 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.41 -10.49 -40.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048574307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.858 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds