Wall clock time and date at job start Wed Apr 1 2020 03:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38809 * 120.42528 * 2 1 4 4 C 1.39499 * 118.25933 * 180.27934 * 3 2 1 5 5 C 1.48458 * 120.54768 * 179.71582 * 4 3 2 6 6 O 1.21477 * 120.00004 * 359.72796 * 5 4 3 7 7 N 1.34773 * 119.99826 * 179.71969 * 5 4 3 8 8 C 1.46499 * 119.99627 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47100 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.39621 * 300.12592 * 9 8 7 11 11 C 1.54482 * 109.73220 * 59.95693 * 9 8 7 12 12 C 1.53702 * 108.19078 * 65.84382 * 11 9 8 13 13 H 1.08994 * 112.10152 * 188.14677 * 12 11 9 14 14 C 1.54610 * 108.36867 * 312.50987 * 12 11 9 15 15 C 1.54311 * 104.75303 * 88.88723 * 14 12 11 16 16 C 1.54604 * 104.74948 * 0.02562 * 15 14 12 17 17 H 1.08999 * 112.69497 * 147.07651 * 16 15 14 18 18 C 1.53141 * 109.43724 * 180.23347 * 9 8 7 19 19 N 1.48290 * 104.26288 * 25.13397 * 16 15 14 20 20 C 1.36941 * 128.21181 * 138.40749 * 19 16 15 21 21 H 1.07998 * 119.99948 * 195.19131 * 20 19 16 22 22 C 1.38819 * 119.99712 * 15.17997 * 20 19 16 23 23 N 1.31622 * 120.00087 * 8.38785 * 22 20 19 24 24 Si 1.86804 * 119.99820 * 188.37952 * 22 20 19 25 25 H 1.48504 * 109.47120 * 0.02562 * 24 22 20 26 26 H 1.48490 * 109.46928 * 120.00480 * 24 22 20 27 27 H 1.48503 * 109.46904 * 240.00371 * 24 22 20 28 28 N 1.33095 * 118.90206 * 359.44294 * 4 3 2 29 29 C 1.31552 * 120.73707 * 0.27718 * 28 4 3 30 30 C 1.50701 * 119.04098 * 179.97438 * 29 28 4 31 31 N 1.31912 * 121.92105 * 0.02562 * 29 28 4 32 32 H 1.09003 * 109.47094 * 270.28647 * 1 2 3 33 33 H 1.09003 * 109.47394 * 30.28031 * 1 2 3 34 34 H 1.08997 * 109.46967 * 150.28146 * 1 2 3 35 35 H 1.08002 * 120.87163 * 0.02562 * 3 2 1 36 36 H 0.97001 * 120.00347 * 0.02562 * 7 5 4 37 37 H 1.09000 * 109.47161 * 60.00802 * 8 7 5 38 38 H 1.08994 * 109.47853 * 300.00000 * 8 7 5 39 39 H 1.08998 * 109.46884 * 306.49311 * 11 9 8 40 40 H 1.09000 * 110.44727 * 185.76454 * 11 9 8 41 41 H 1.09008 * 110.38068 * 207.70804 * 14 12 11 42 42 H 1.08996 * 110.38308 * 330.06569 * 14 12 11 43 43 H 1.08996 * 110.37928 * 241.18629 * 15 14 12 44 44 H 1.09002 * 110.37742 * 118.81999 * 15 14 12 45 45 H 1.09001 * 109.57475 * 174.00599 * 18 9 8 46 46 H 1.08995 * 109.57346 * 53.64262 * 18 9 8 47 47 H 0.96993 * 119.99802 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.47298 * 90.00021 * 30 29 28 49 49 H 1.08998 * 109.47533 * 209.99748 * 30 29 28 50 50 H 1.08999 * 109.47367 * 330.00253 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 -0.0060 5 6 4.4062 2.3933 -0.0126 6 8 3.8493 3.4729 -0.0179 7 7 5.7525 2.3295 -0.0127 8 6 6.5441 3.5621 -0.0198 9 6 8.0335 3.2117 -0.0189 10 1 8.2683 2.6313 0.8733 11 6 8.3736 2.3769 -1.2734 12 6 8.1722 3.2663 -2.5107 13 1 8.2569 2.7022 -3.4395 14 6 6.8056 3.9778 -2.3821 15 6 7.1117 5.2811 -1.6148 16 6 8.6347 5.2349 -1.3525 17 1 9.0926 6.2240 -1.3584 18 6 8.8603 4.5008 -0.0205 19 7 9.1648 4.3654 -2.4303 20 6 10.3018 4.5362 -3.1743 21 1 10.4432 3.9689 -4.0824 22 6 11.2723 5.4387 -2.7614 23 7 11.1816 6.0070 -1.5776 24 14 12.7074 5.8464 -3.8856 25 1 12.5780 5.0802 -5.1512 26 1 12.7037 7.3007 -4.1853 27 1 13.9810 5.4825 -3.2142 28 7 4.2027 -0.0444 -0.0001 29 6 3.4954 -1.1536 0.0057 30 6 4.2130 -2.4788 0.0116 31 7 2.1764 -1.1397 0.0054 32 1 -0.3633 0.0051 1.0277 33 1 -0.3634 0.8875 -0.5182 34 1 -0.3633 -0.8925 -0.5094 35 1 1.6912 2.1442 0.0004 36 1 6.1972 1.4675 -0.0087 37 1 6.3085 4.1504 0.8671 38 1 6.3080 4.1406 -0.9128 39 1 7.7063 1.5169 -1.3294 40 1 9.4078 2.0347 -1.2342 41 1 6.4011 4.2041 -3.3687 42 1 6.1075 3.3598 -1.8174 43 1 6.5644 5.3043 -0.6725 44 1 6.8579 6.1487 -2.2238 45 1 9.9172 4.2569 0.0874 46 1 8.5448 5.1380 0.8056 47 1 11.8599 6.6373 -1.2890 48 1 4.3866 -2.7933 1.0407 49 1 3.6031 -3.2246 -0.4982 50 1 5.1683 -2.3770 -0.5032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048574307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:24 Heat of formation + Delta-G solvation = 110.211790 kcal Electronic energy + Delta-G solvation = -31208.296825 eV Core-core repulsion = 27239.259328 eV Total energy + Delta-G solvation = -3969.037498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.82346 -42.22378 -40.11384 -36.34449 -35.69529 -34.64999 -34.34744 -32.92646 -32.33235 -31.36793 -30.16060 -29.20904 -28.53012 -26.19990 -24.93484 -24.71056 -23.23163 -22.20439 -21.91258 -20.98208 -20.51597 -19.41364 -18.61545 -18.41633 -17.45164 -16.85067 -16.75324 -16.59281 -16.31223 -15.91819 -15.79379 -15.22510 -14.86558 -14.54526 -14.41817 -14.25667 -14.22230 -14.08211 -13.69404 -13.38055 -13.33470 -13.20771 -13.17552 -13.08616 -13.04605 -12.83283 -12.69659 -12.51783 -12.31806 -12.02928 -11.93861 -11.66781 -11.60668 -11.34035 -11.28002 -11.02310 -10.90146 -10.87918 -10.53469 -10.47411 -10.40532 -9.56010 -8.71344 -7.80590 -5.15158 -0.62169 -0.17324 1.46775 1.48453 1.57348 1.62359 1.91204 2.51956 2.66760 2.75471 2.89492 3.35745 3.42215 3.59442 3.74880 3.89578 3.90544 3.93344 4.02880 4.22424 4.27069 4.32380 4.36846 4.38549 4.54338 4.58459 4.68725 4.70075 4.71478 4.75465 4.77165 4.87526 4.87860 4.90915 4.97204 5.01833 5.11040 5.16460 5.17237 5.26032 5.35982 5.39559 5.41844 5.49378 5.53829 5.58512 5.76891 5.82637 5.90893 6.31511 6.41221 6.89664 7.03635 7.13204 7.79255 8.60347 9.30058 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023297 B = 0.002544 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.576615 B =11002.390315 C =11464.769197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.180 3.820 3 C -0.183 4.183 4 C 0.123 3.877 5 C 0.562 3.438 6 O -0.555 6.555 7 N -0.687 5.687 8 C 0.011 3.989 9 C -0.076 4.076 10 H 0.068 0.932 11 C -0.114 4.114 12 C 0.142 3.858 13 H 0.063 0.937 14 C -0.149 4.149 15 C -0.163 4.163 16 C 0.174 3.826 17 H 0.072 0.928 18 C -0.100 4.100 19 N -0.605 5.605 20 C -0.230 4.230 21 H 0.072 0.928 22 C -0.058 4.058 23 N -0.934 5.934 24 Si 0.968 3.032 25 H -0.271 1.271 26 H -0.295 1.295 27 H -0.295 1.295 28 N -0.512 5.512 29 C 0.310 3.690 30 C -0.083 4.083 31 N -0.519 5.519 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.169 0.831 36 H 0.413 0.587 37 H 0.056 0.944 38 H 0.189 0.811 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.052 0.948 45 H 0.039 0.961 46 H 0.052 0.948 47 H 0.245 0.755 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.324 -14.898 5.192 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.032 3.968 3 C -0.206 4.206 4 C -0.024 4.024 5 C 0.346 3.654 6 O -0.433 6.433 7 N -0.338 5.338 8 C -0.108 4.108 9 C -0.095 4.095 10 H 0.086 0.914 11 C -0.154 4.154 12 C 0.035 3.965 13 H 0.081 0.919 14 C -0.187 4.187 15 C -0.201 4.201 16 C 0.067 3.933 17 H 0.090 0.910 18 C -0.140 4.140 19 N -0.327 5.327 20 C -0.359 4.359 21 H 0.090 0.910 22 C -0.252 4.252 23 N -0.582 5.582 24 Si 0.798 3.202 25 H -0.196 1.196 26 H -0.222 1.222 27 H -0.223 1.223 28 N -0.230 5.230 29 C 0.043 3.957 30 C -0.141 4.141 31 N -0.236 5.236 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.186 0.814 36 H 0.250 0.750 37 H 0.074 0.926 38 H 0.204 0.796 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.055 0.945 48 H 0.118 0.882 49 H 0.117 0.883 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.927 -14.840 5.149 25.374 hybrid contribution 1.337 0.989 -0.237 1.680 sum -18.590 -13.851 4.912 23.697 Atomic orbital electron populations 1.20954 0.84350 1.05575 1.05216 1.22451 0.99597 0.86860 0.87905 1.22976 0.94075 1.02346 1.01249 1.21616 0.92773 0.92172 0.95798 1.17997 0.82735 0.87195 0.77454 1.90772 1.71809 1.29226 1.51500 1.46109 1.05164 1.11494 1.71003 1.25030 0.90376 0.87114 1.08238 1.21358 0.93040 0.97050 0.98006 0.91389 1.22279 1.00241 0.97397 0.95454 1.21741 0.88878 0.89770 0.96096 0.91927 1.23318 0.98433 0.96973 1.00024 1.23461 0.98742 0.97105 1.00830 1.21454 0.89335 0.95294 0.87230 0.91032 1.21835 0.98433 0.95572 0.98198 1.45366 1.23381 1.23058 1.40899 1.19298 0.94397 1.20330 1.01858 0.90980 1.25506 1.00230 1.01660 0.97819 1.70041 1.35932 1.33140 1.19114 0.85167 0.79369 0.77165 0.78525 1.19563 1.22242 1.22267 1.68183 1.42014 0.98222 1.14618 1.23903 0.86871 0.95315 0.89660 1.20723 1.00257 0.88035 1.05126 1.68185 1.09846 1.30950 1.14568 0.87867 0.88018 0.89022 0.81367 0.75002 0.92607 0.79606 0.90723 0.93776 0.92609 0.87276 0.87502 0.92939 0.94207 0.92945 0.94532 0.88177 0.88265 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.22 71.24 0.73 -0.17 16 2 C 0.18 3.09 6.83 42.64 0.29 3.38 16 3 C -0.18 -3.71 9.41 22.71 0.21 -3.50 16 4 C 0.12 3.01 6.79 41.98 0.29 3.29 16 5 C 0.56 15.80 7.59 86.97 0.66 16.46 16 6 O -0.56 -18.24 16.43 -3.64 -0.06 -18.30 16 7 N -0.69 -18.32 4.39 -465.39 -2.04 -20.36 16 8 C 0.01 0.34 2.68 86.38 0.23 0.58 16 9 C -0.08 -2.51 2.77 -10.24 -0.03 -2.54 16 10 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 11 C -0.11 -3.93 5.40 31.33 0.17 -3.76 16 12 C 0.14 5.58 4.28 45.43 0.19 5.77 16 13 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 14 C -0.15 -5.18 5.72 31.59 0.18 -5.00 16 15 C -0.16 -6.10 5.72 31.58 0.18 -5.92 16 16 C 0.17 7.94 3.16 45.45 0.14 8.09 16 17 H 0.07 3.87 6.28 -2.39 -0.01 3.86 16 18 C -0.10 -4.16 5.30 30.90 0.16 -3.99 16 19 N -0.61 -29.57 2.82 -637.07 -1.79 -31.37 16 20 C -0.23 -12.54 10.38 84.03 0.87 -11.67 16 21 H 0.07 3.86 7.84 -2.91 -0.02 3.83 16 22 C -0.06 -3.22 5.43 84.86 0.46 -2.76 16 23 N -0.93 -53.97 10.60 21.65 0.23 -53.74 16 24 Si 0.97 45.43 29.56 68.60 2.03 47.46 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 28 N -0.51 -11.73 9.60 -177.09 -1.70 -13.43 16 29 C 0.31 6.17 7.64 138.79 1.06 7.23 16 30 C -0.08 -1.04 10.31 71.24 0.73 -0.30 16 31 N -0.52 -10.14 10.25 -176.05 -1.81 -11.94 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 0.56 8.10 -2.39 -0.02 0.54 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.17 3.00 7.74 -2.91 -0.02 2.97 16 36 H 0.41 10.01 6.72 -92.71 -0.62 9.39 16 37 H 0.06 1.71 8.00 -2.39 -0.02 1.70 16 38 H 0.19 6.01 1.12 -109.53 -0.12 5.89 16 39 H 0.07 2.09 6.76 -2.39 -0.02 2.08 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.11 3.42 3.95 -2.39 -0.01 3.41 16 43 H 0.11 3.60 4.84 -2.39 -0.01 3.59 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.04 1.94 8.04 -2.39 -0.02 1.93 16 46 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 48 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -67.37 381.84 1.63 -65.74 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.24 Total: 30.76 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 6.54 Total: 5.18 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -7.11 Total: -130.84 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.06 Total: -18.30 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -67.37 1.63 -65.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048574307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.951 kcal (2) G-P(sol) polarization free energy of solvation -67.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds