Wall clock time and date at job start Wed Apr 1 2020 03:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34854 * 125.96361 * 2 1 4 4 N 1.36306 * 106.68957 * 180.02562 * 3 2 1 5 5 C 1.35419 * 107.40087 * 359.92558 * 4 3 2 6 6 N 1.30089 * 108.62842 * 0.09191 * 5 4 3 7 7 C 1.51041 * 123.98498 * 180.10811 * 5 4 3 8 8 C 1.53406 * 108.21228 * 15.94691 * 7 5 4 9 9 H 1.09004 * 109.50614 * 71.11200 * 8 7 5 10 10 C 1.50693 * 109.51001 * 191.25290 * 8 7 5 11 11 O 1.21283 * 120.00419 * 86.12640 * 10 8 7 12 12 N 1.34781 * 120.00252 * 266.12398 * 10 8 7 13 13 C 1.46666 * 125.33214 * 5.01960 * 12 10 8 14 14 C 1.53671 * 107.97010 * 180.71109 * 13 12 10 15 15 H 1.09004 * 112.77321 * 140.60920 * 14 13 12 16 16 C 1.53978 * 109.29799 * 266.92846 * 14 13 12 17 17 N 1.46757 * 106.67707 * 138.83506 * 16 14 13 18 18 C 1.36941 * 125.33607 * 161.58627 * 17 16 14 19 19 H 1.07993 * 120.00047 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99954 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00014 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00019 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46779 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47372 * 119.99844 * 22 20 18 25 25 H 1.48503 * 109.46876 * 240.00092 * 22 20 18 26 26 C 1.46656 * 109.33105 * 341.55508 * 17 16 14 27 27 C 1.53678 * 107.97170 * 0.70624 * 26 17 16 28 28 H 1.08993 * 112.77578 * 139.88648 * 27 26 17 29 29 C 1.46756 * 125.34055 * 184.71912 * 12 10 8 30 30 C 1.53151 * 109.23972 * 311.18498 * 8 7 5 31 31 C 1.46482 * 127.77728 * 179.90824 * 4 3 2 32 32 H 1.09002 * 109.46765 * 90.00311 * 1 2 3 33 33 H 1.09005 * 109.47173 * 210.00340 * 1 2 3 34 34 H 1.09000 * 109.47207 * 330.00130 * 1 2 3 35 35 H 1.08001 * 126.65239 * 0.02562 * 3 2 1 36 36 H 1.09001 * 109.71398 * 256.27237 * 7 5 4 37 37 H 1.08997 * 109.71969 * 135.62835 * 7 5 4 38 38 H 1.09003 * 109.76760 * 300.34259 * 13 12 10 39 39 H 1.09006 * 109.76324 * 61.06723 * 13 12 10 40 40 H 1.08990 * 110.01996 * 258.14352 * 16 14 13 41 41 H 1.09000 * 110.01561 * 19.53391 * 16 14 13 42 42 H 0.97008 * 119.99858 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.77392 * 120.33558 * 26 17 16 44 44 H 1.09003 * 109.77262 * 241.07902 * 26 17 16 45 45 H 1.09003 * 110.01239 * 280.85268 * 29 12 10 46 46 H 1.08996 * 110.01692 * 42.23970 * 29 12 10 47 47 H 1.08994 * 109.46479 * 189.49389 * 30 8 7 48 48 H 1.09000 * 109.46397 * 309.47487 * 30 8 7 49 49 H 1.09005 * 109.57994 * 77.36028 * 31 4 3 50 50 H 1.08996 * 109.69692 * 317.00979 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5856 0.6416 -0.0006 5 6 3.5413 -0.7119 0.0008 6 7 2.2957 -1.0869 0.0001 7 6 4.7655 -1.5967 0.0030 8 6 5.9744 -0.7415 0.4038 9 1 5.9062 -0.4880 1.4618 10 6 7.2433 -1.5141 0.1512 11 8 7.7609 -1.4885 -0.9453 12 7 7.8032 -2.2337 1.1439 13 6 7.2260 -2.4317 2.4775 14 6 8.2000 -3.2975 3.2919 15 1 8.2819 -2.9772 4.3306 16 6 7.8018 -4.7785 3.1539 17 7 9.0487 -5.5375 3.0030 18 6 9.1851 -6.8850 3.2054 19 1 8.3307 -7.4759 3.5005 20 6 10.4215 -7.4914 3.0311 21 7 11.4628 -6.7712 2.6708 22 14 10.6074 -9.3296 3.3064 23 1 9.2972 -9.9058 3.7020 24 1 11.0733 -9.9734 2.0519 25 1 11.5996 -9.5708 4.3846 26 6 10.1258 -4.6269 2.6010 27 6 9.5383 -3.2100 2.5069 28 1 10.2119 -2.4472 2.8973 29 6 9.0828 -2.9470 1.0577 30 6 5.9828 0.5428 -0.4304 31 6 4.8148 1.4383 -0.0027 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 1.9763 2.1222 0.0004 36 1 4.9219 -2.0104 -0.9932 37 1 4.6331 -2.4058 0.7212 38 1 7.0914 -1.4675 2.9678 39 1 6.2649 -2.9388 2.3917 40 1 7.2708 -5.1069 4.0472 41 1 7.1730 -4.9153 2.2741 42 1 12.3269 -7.1950 2.5494 43 1 10.9225 -4.6470 3.3446 44 1 10.5198 -4.9278 1.6302 45 1 8.9490 -3.8905 0.5285 46 1 9.8194 -2.3308 0.5421 47 1 6.9227 1.0719 -0.2731 48 1 5.8800 0.2911 -1.4859 49 1 5.0000 1.8268 0.9988 50 1 4.7142 2.2671 -0.7033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048893122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:35 Heat of formation + Delta-G solvation = 51.632481 kcal Electronic energy + Delta-G solvation = -30612.706160 eV Core-core repulsion = 26641.128473 eV Total energy + Delta-G solvation = -3971.577687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.59133 -40.44265 -38.64395 -36.50744 -35.09070 -33.59975 -32.27285 -31.79054 -30.31912 -29.74382 -29.17146 -27.56384 -25.70492 -25.52892 -24.32891 -23.48538 -22.34692 -20.62502 -20.27170 -19.55229 -19.44277 -18.91732 -17.44529 -17.15619 -16.68201 -16.19071 -15.78674 -15.31770 -14.99284 -14.74020 -14.45919 -14.34457 -14.12121 -13.94029 -13.72115 -13.38304 -13.24152 -13.19764 -12.83486 -12.59232 -12.53177 -12.20440 -12.06182 -11.94219 -11.86848 -11.84384 -11.49953 -11.47270 -11.40737 -10.91027 -10.84533 -10.42377 -10.13266 -10.10418 -10.04559 -9.94376 -9.74107 -9.72240 -9.71025 -8.64049 -8.50309 -8.39017 -6.87464 -5.75871 -3.09529 1.80740 2.48506 2.53244 2.89112 2.97719 3.38394 3.44357 3.46545 3.94532 4.11304 4.19461 4.23453 4.46036 4.61907 4.66727 4.73461 4.75074 4.83536 4.90441 5.00684 5.07190 5.13281 5.15467 5.34030 5.37622 5.41223 5.49594 5.50541 5.52230 5.60121 5.66072 5.70171 5.72391 5.73746 5.83322 5.85318 6.09988 6.10777 6.19320 6.30426 6.39619 6.58690 6.59231 6.62648 6.77679 6.93862 7.48352 7.53006 7.60272 7.77278 7.94009 8.14258 8.22383 9.18652 9.78927 10.42012 11.35837 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018774 B = 0.002377 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.086198 B =11776.861390 C =12632.300973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.005 4.005 3 C -0.057 4.057 4 N -0.456 5.456 5 C 0.218 3.782 6 N -0.484 5.484 7 C -0.021 4.021 8 C -0.107 4.107 9 H 0.097 0.903 10 C 0.534 3.466 11 O -0.540 6.540 12 N -0.606 5.606 13 C 0.108 3.892 14 C -0.109 4.109 15 H 0.097 0.903 16 C 0.143 3.857 17 N -0.603 5.603 18 C -0.229 4.229 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.186 3.814 27 C -0.121 4.121 28 H 0.088 0.912 29 C 0.118 3.882 30 C -0.117 4.117 31 C 0.105 3.895 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.173 0.827 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.019 0.981 42 H 0.252 0.748 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.095 0.905 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.791 20.645 -2.516 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.189 4.189 4 N -0.139 5.139 5 C -0.045 4.045 6 N -0.203 5.203 7 C -0.060 4.060 8 C -0.129 4.129 9 H 0.116 0.884 10 C 0.321 3.679 11 O -0.417 6.417 12 N -0.339 5.339 13 C -0.015 4.015 14 C -0.128 4.128 15 H 0.116 0.884 16 C 0.017 3.983 17 N -0.329 5.329 18 C -0.357 4.357 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.743 3.257 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.061 3.939 27 C -0.141 4.141 28 H 0.106 0.894 29 C -0.004 4.004 30 C -0.155 4.155 31 C -0.017 4.017 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.190 0.810 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.113 0.887 48 H 0.107 0.893 49 H 0.105 0.895 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.529 19.829 -3.175 24.786 hybrid contribution 0.460 -0.010 0.245 0.521 sum -14.069 19.819 -2.930 24.481 Atomic orbital electron populations 1.20000 0.87702 1.02533 1.02051 1.20811 0.96482 0.88294 1.07783 1.22274 0.82826 1.00331 1.13502 1.45361 1.06539 1.07418 1.54630 1.23054 0.94615 0.81464 1.05328 1.69966 0.99613 1.30387 1.20329 1.20051 0.85706 0.95464 1.04827 1.21378 0.93412 0.95835 1.02283 0.88450 1.19822 0.85303 0.79264 0.83515 1.90718 1.64080 1.64048 1.22867 1.48380 1.22716 1.49649 1.13167 1.21942 0.97508 0.99360 0.82705 1.22852 0.94564 0.96661 0.98767 0.88436 1.21318 0.90541 0.88446 0.98036 1.44229 1.03658 1.04319 1.80686 1.19092 0.94963 0.81823 1.39805 0.90302 1.24807 0.95721 0.98246 1.01624 1.69959 0.99956 1.33771 1.53297 0.86031 0.77559 0.84707 0.77386 1.20481 1.21717 1.21748 1.20989 0.90170 0.82332 1.00367 1.23229 0.96451 1.01580 0.92849 0.89373 1.22176 0.83703 0.96680 0.97836 1.21749 0.97893 0.94293 1.01562 1.22016 0.81969 0.94307 1.03388 0.91587 0.91194 0.91508 0.80971 0.88377 0.87986 0.91869 0.91112 0.94536 0.96379 0.93720 0.93235 0.93234 0.90597 0.91275 0.88675 0.89340 0.89513 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.42 36.01 0.38 -0.15 16 2 C 0.00 -0.05 7.10 -82.72 -0.59 -0.64 16 3 C -0.06 -0.53 11.55 -16.76 -0.19 -0.72 16 4 N -0.46 -4.41 3.13 -113.75 -0.36 -4.77 16 5 C 0.22 2.62 7.65 -155.25 -1.19 1.43 16 6 N -0.48 -6.70 11.24 -6.88 -0.08 -6.77 16 7 C -0.02 -0.23 5.63 -27.51 -0.15 -0.39 16 8 C -0.11 -1.07 2.15 -91.49 -0.20 -1.26 16 9 H 0.10 0.83 6.90 -51.93 -0.36 0.47 16 10 C 0.53 7.36 6.81 -10.99 -0.07 7.28 16 11 O -0.54 -9.35 16.73 5.55 0.09 -9.25 16 12 N -0.61 -8.64 3.31 -172.21 -0.57 -9.21 16 13 C 0.11 1.33 5.54 -3.60 -0.02 1.31 16 14 C -0.11 -1.65 4.10 -88.48 -0.36 -2.01 16 15 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.14 2.75 6.42 -3.39 -0.02 2.73 16 17 N -0.60 -14.70 3.38 -171.89 -0.58 -15.28 16 18 C -0.23 -6.22 10.25 -15.06 -0.15 -6.37 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 21 N -0.92 -26.47 10.25 55.49 0.57 -25.90 16 22 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.19 4.26 4.72 -3.60 -0.02 4.24 16 27 C -0.12 -2.06 4.12 -88.38 -0.36 -2.42 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 C 0.12 1.97 6.03 -3.29 -0.02 1.95 16 30 C -0.12 -0.96 4.75 -26.52 -0.13 -1.09 16 31 C 0.11 0.68 6.98 -3.92 -0.03 0.65 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.10 1.17 8.11 -51.93 -0.42 0.75 16 37 H 0.10 1.11 8.12 -51.93 -0.42 0.69 16 38 H 0.06 0.61 7.61 -51.93 -0.40 0.22 16 39 H 0.07 0.82 7.61 -51.93 -0.40 0.43 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 43 H 0.05 1.26 7.36 -51.93 -0.38 0.88 16 44 H 0.05 1.27 6.93 -51.93 -0.36 0.91 16 45 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 48 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 49 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 390.10 15.07 5.88 5.88 Total: -1.00 -33.99 390.10 -11.43 -45.42 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -8.14 Total: -1.18 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -3.23 Total: 4.23 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -1.02 Total: -61.94 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.99 -11.43 -45.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048893122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.050 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds