Wall clock time and date at job start Wed Apr 1 2020 03:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32161 * 120.53777 * 2 1 4 4 C 1.31859 * 120.96788 * 179.97438 * 3 2 1 5 5 C 1.50691 * 118.95145 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47364 * 119.99918 * 5 4 3 7 7 C 1.53009 * 109.46784 * 240.00030 * 5 4 3 8 8 N 1.31882 * 122.09442 * 0.27841 * 4 3 2 9 9 C 1.32138 * 120.96645 * 359.43554 * 8 4 3 10 10 C 1.39929 * 120.53627 * 179.97438 * 2 1 3 11 11 C 1.47833 * 120.94136 * 0.02562 * 10 2 1 12 12 O 1.21555 * 119.99983 * 35.83666 * 11 10 2 13 13 N 1.34769 * 120.00254 * 215.83257 * 11 10 2 14 14 C 1.46667 * 125.34315 * 185.61608 * 13 11 10 15 15 C 1.53723 * 107.94904 * 180.54862 * 14 13 11 16 16 H 1.08993 * 112.56651 * 139.71782 * 15 14 13 17 17 C 1.53696 * 109.34103 * 266.25722 * 15 14 13 18 18 N 1.46638 * 108.01093 * 127.55197 * 17 15 14 19 19 C 1.36938 * 125.32997 * 180.81412 * 18 17 15 20 20 H 1.08005 * 119.99878 * 174.96760 * 19 18 17 21 21 C 1.38809 * 119.99937 * 354.97067 * 19 18 17 22 22 N 1.31619 * 119.99861 * 5.10663 * 21 19 18 23 23 Si 1.86794 * 120.00029 * 185.10799 * 21 19 18 24 24 H 1.48504 * 109.47469 * 94.99521 * 23 21 19 25 25 H 1.48497 * 109.47390 * 214.99682 * 23 21 19 26 26 H 1.48506 * 109.47041 * 335.00016 * 23 21 19 27 27 C 1.46752 * 109.34071 * 0.83881 * 18 17 15 28 28 C 1.53926 * 106.72055 * 341.65420 * 27 18 17 29 29 H 1.09003 * 113.01224 * 150.83248 * 28 27 18 30 30 C 1.46786 * 125.33594 * 5.31731 * 13 11 10 31 31 H 1.08995 * 109.47274 * 85.37197 * 1 2 3 32 32 H 1.09008 * 109.47179 * 205.37071 * 1 2 3 33 33 H 1.09000 * 109.47073 * 325.36380 * 1 2 3 34 34 H 1.08999 * 109.47531 * 359.97438 * 5 4 3 35 35 H 1.09004 * 109.47005 * 59.99821 * 6 5 4 36 36 H 1.08992 * 109.47281 * 299.99511 * 6 5 4 37 37 H 1.09005 * 109.47288 * 179.97438 * 6 5 4 38 38 H 1.08989 * 109.46854 * 299.99532 * 7 5 4 39 39 H 1.08997 * 109.46834 * 60.00058 * 7 5 4 40 40 H 1.09001 * 109.46827 * 180.02562 * 7 5 4 41 41 H 1.08003 * 120.53863 * 180.27500 * 9 8 4 42 42 H 1.09000 * 109.77528 * 300.17434 * 14 13 11 43 43 H 1.09000 * 109.76787 * 60.92423 * 14 13 11 44 44 H 1.09001 * 109.75911 * 247.19396 * 17 15 14 45 45 H 1.09002 * 109.75842 * 7.90982 * 17 15 14 46 46 H 0.97001 * 119.99405 * 179.97438 * 22 21 19 47 47 H 1.09007 * 110.00426 * 222.34261 * 27 18 17 48 48 H 1.08989 * 110.00979 * 100.97399 * 27 18 17 49 49 H 1.08993 * 110.02283 * 280.77028 * 30 13 11 50 50 H 1.09000 * 110.02644 * 42.19230 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4971 1.1482 0.0005 5 6 4.2166 2.4722 0.0011 6 6 5.0934 2.5757 1.2506 7 6 5.0944 2.5761 -1.2479 8 7 4.2062 0.0362 -0.0044 9 6 3.6164 -1.1462 0.0011 10 6 2.2180 -1.2052 0.0005 11 6 1.5121 -2.5041 0.0006 12 8 0.4723 -2.6308 -0.6161 13 7 2.0214 -3.5479 0.6842 14 6 1.4860 -4.9133 0.6710 15 6 2.3609 -5.7742 1.5964 16 1 1.7760 -6.4737 2.1935 17 6 3.4570 -6.4612 0.7665 18 7 4.7499 -6.1719 1.3949 19 6 5.9671 -6.5993 0.9355 20 1 6.8738 -6.2683 1.4200 21 6 6.0355 -7.4579 -0.1531 22 7 4.9393 -7.7815 -0.8059 23 14 7.6831 -8.1541 -0.6914 24 1 7.8811 -9.4906 -0.0750 25 1 7.7067 -8.2829 -2.1706 26 1 8.7717 -7.2424 -0.2564 27 6 4.5352 -5.3530 2.5937 28 6 3.1294 -4.7395 2.4649 29 1 2.6567 -4.5513 3.4289 30 6 3.2027 -3.4979 1.5541 31 1 -0.3633 0.0829 -1.0243 32 1 -0.3634 -0.9286 0.4404 33 1 -0.3633 0.8455 0.5841 34 1 3.4872 3.2822 0.0005 35 1 5.8228 1.7658 1.2508 36 1 4.4681 2.5018 2.1403 37 1 5.6142 3.5333 1.2508 38 1 5.8237 1.7663 -1.2477 39 1 4.4697 2.5024 -2.1381 40 1 5.6152 3.5337 -1.2473 41 1 4.2039 -2.0525 0.0015 42 1 0.4580 -4.9099 1.0335 43 1 1.5181 -5.3121 -0.3429 44 1 3.2874 -7.5379 0.7513 45 1 3.4468 -6.0721 -0.2516 46 1 4.9873 -8.3813 -1.5667 47 1 5.2840 -4.5624 2.6442 48 1 4.5898 -5.9765 3.4859 49 1 4.1109 -3.5262 0.9521 50 1 3.1830 -2.5911 2.1586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049099409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:27 Heat of formation + Delta-G solvation = 39.304513 kcal Electronic energy + Delta-G solvation = -31087.197047 eV Core-core repulsion = 27115.084779 eV Total energy + Delta-G solvation = -3972.112268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.57800 -40.08512 -38.31413 -35.92165 -35.18614 -34.32244 -32.50055 -31.98296 -30.42655 -29.55730 -28.65487 -27.39091 -25.99597 -25.66346 -24.96926 -23.47784 -23.00714 -20.80329 -20.19690 -19.77697 -19.42158 -18.16049 -17.29163 -16.75165 -16.37072 -16.25809 -15.41533 -15.28025 -14.75322 -14.49602 -14.38489 -14.30347 -13.74589 -13.53668 -13.48729 -13.32025 -12.98283 -12.86102 -12.78626 -12.41754 -12.31640 -12.17726 -12.09328 -12.06103 -11.59435 -11.54546 -11.44334 -11.31726 -11.16828 -10.94866 -10.86390 -10.68119 -10.50531 -10.17805 -10.13461 -9.95797 -9.84195 -9.68989 -9.51171 -9.40189 -8.65567 -8.46253 -6.90682 -5.79627 -3.13242 0.38259 0.89588 2.70788 2.99602 3.36288 3.41907 3.43896 3.53804 3.57731 3.87628 4.24710 4.38465 4.44184 4.70547 4.71080 4.77443 4.77765 4.87553 4.98844 5.15050 5.29408 5.31749 5.42355 5.43385 5.46897 5.47574 5.52816 5.56661 5.58516 5.62803 5.64245 5.72194 5.75155 5.86919 5.88970 5.99802 6.07730 6.09205 6.17324 6.23239 6.24889 6.41952 6.49146 6.53083 6.71837 6.78114 7.44643 7.52894 7.57379 7.74554 7.89392 8.11824 8.19359 9.14987 9.75503 10.38620 11.31982 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.003325 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.652535 B = 8418.441756 C = 9828.048708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.229 3.771 3 N -0.524 5.524 4 C 0.341 3.659 5 C -0.028 4.028 6 C -0.141 4.141 7 C -0.142 4.142 8 N -0.516 5.516 9 C 0.188 3.812 10 C -0.241 4.241 11 C 0.582 3.418 12 O -0.532 6.532 13 N -0.599 5.599 14 C 0.122 3.878 15 C -0.122 4.122 16 H 0.093 0.907 17 C 0.183 3.817 18 N -0.602 5.602 19 C -0.233 4.233 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.145 3.855 28 C -0.110 4.110 29 H 0.091 0.909 30 C 0.107 3.893 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.180 0.820 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.253 0.747 47 H 0.038 0.962 48 H 0.022 0.978 49 H 0.082 0.918 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 17.603 5.041 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 N -0.238 5.238 4 C 0.074 3.926 5 C -0.048 4.048 6 C -0.199 4.199 7 C -0.200 4.200 8 N -0.229 5.229 9 C 0.022 3.978 10 C -0.249 4.249 11 C 0.370 3.630 12 O -0.411 6.411 13 N -0.332 5.332 14 C -0.001 4.001 15 C -0.142 4.142 16 H 0.111 0.889 17 C 0.059 3.941 18 N -0.329 5.329 19 C -0.361 4.361 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.018 3.982 28 C -0.130 4.130 29 H 0.110 0.890 30 C -0.015 4.015 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.197 0.803 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.040 0.960 49 H 0.100 0.900 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.607 18.323 4.478 19.678 hybrid contribution 0.503 -1.412 -0.365 1.543 sum -5.104 16.911 4.114 18.137 Atomic orbital electron populations 1.20896 0.86893 1.04189 1.04350 1.21856 0.97802 0.86433 0.85678 1.68202 1.09567 1.29589 1.16478 1.23409 0.86454 0.94858 0.87860 1.20018 0.96995 0.90197 0.97585 1.21801 0.99610 1.02866 0.95650 1.21808 0.99626 1.02854 0.95709 1.68262 1.41035 0.98247 1.15405 1.23881 0.90995 0.96720 0.86250 1.21559 0.96480 0.95906 1.10943 1.17330 0.84211 0.82241 0.79262 1.90770 1.22850 1.83512 1.43938 1.48151 1.29889 1.09424 1.45687 1.21889 0.96911 0.80117 1.01136 1.23179 0.97767 0.96630 0.96652 0.88868 1.21139 0.81359 0.97997 0.93652 1.44212 1.03058 1.60029 1.25579 1.19034 0.83450 1.22514 1.11096 0.90317 1.24806 0.97304 0.99722 0.98237 1.69957 1.25696 1.38949 1.21990 0.86124 0.82922 0.79189 0.77673 1.21581 1.21751 1.20583 1.21168 0.92151 0.93600 0.91262 1.22950 0.98631 0.93869 0.97563 0.89041 1.22336 0.88500 0.98540 0.92167 0.88938 0.89136 0.90225 0.88580 0.91143 0.92766 0.91510 0.91150 0.92768 0.91492 0.80309 0.91899 0.90535 0.93289 0.93394 0.93660 0.94394 0.96024 0.90009 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.32 36.01 0.34 -0.89 16 2 C 0.23 3.15 6.86 -81.82 -0.56 2.59 16 3 N -0.52 -7.09 10.22 -6.68 -0.07 -7.15 16 4 C 0.34 4.40 6.34 -157.07 -1.00 3.40 16 5 C -0.03 -0.27 3.25 -91.77 -0.30 -0.57 16 6 C -0.14 -1.20 9.09 37.16 0.34 -0.86 16 7 C -0.14 -1.26 9.08 37.16 0.34 -0.92 16 8 N -0.52 -7.14 9.77 -10.39 -0.10 -7.24 16 9 C 0.19 2.67 9.60 -16.77 -0.16 2.51 16 10 C -0.24 -3.53 5.46 -104.69 -0.57 -4.10 16 11 C 0.58 9.41 7.01 -12.34 -0.09 9.32 16 12 O -0.53 -9.66 15.09 5.32 0.08 -9.58 16 13 N -0.60 -9.42 3.31 -173.28 -0.57 -9.99 16 14 C 0.12 1.95 6.24 -3.57 -0.02 1.93 16 15 C -0.12 -2.04 4.02 -88.60 -0.36 -2.40 16 16 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 17 C 0.18 4.09 4.76 -3.61 -0.02 4.07 16 18 N -0.60 -14.13 3.37 -171.93 -0.58 -14.71 16 19 C -0.23 -6.13 10.24 -15.06 -0.15 -6.28 16 20 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 21 C 0.00 -0.11 5.48 -17.43 -0.10 -0.20 16 22 N -0.92 -25.96 10.28 55.49 0.57 -25.39 16 23 Si 0.91 21.48 29.56 -169.99 -5.02 16.46 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.14 2.66 6.37 -3.42 -0.02 2.64 16 28 C -0.11 -1.67 4.19 -88.24 -0.37 -2.04 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 C 0.11 1.57 4.53 -3.28 -0.01 1.56 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.12 6.17 -51.92 -0.32 0.80 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.07 0.67 8.01 -51.93 -0.42 0.25 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.70 8.00 -51.94 -0.42 0.28 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.18 2.50 5.62 -52.48 -0.29 2.21 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 1.36 7.44 -51.93 -0.39 0.98 16 44 H 0.05 1.24 7.32 -51.93 -0.38 0.86 16 45 H 0.05 1.21 6.66 -51.93 -0.35 0.86 16 46 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.04 0.67 7.95 -51.92 -0.41 0.26 16 48 H 0.02 0.40 8.14 -51.94 -0.42 -0.02 16 49 H 0.08 1.34 6.08 -51.93 -0.32 1.03 16 50 H 0.06 0.82 7.55 -51.93 -0.39 0.43 16 LS Contribution 391.18 15.07 5.90 5.90 Total: -1.00 -30.64 391.18 -10.39 -41.03 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.87 Total: 0.95 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -2.71 Total: 9.75 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -0.75 Total: -64.49 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.64 -10.39 -41.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049099409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.333 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds