Wall clock time and date at job start Wed Apr 1 2020 03:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32161 * 120.53777 * 2 1 4 4 C 1.31859 * 120.96788 * 179.97438 * 3 2 1 5 5 C 1.50691 * 118.95145 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47364 * 119.99918 * 5 4 3 7 7 C 1.53009 * 109.46784 * 240.00030 * 5 4 3 8 8 N 1.31882 * 122.09442 * 0.27841 * 4 3 2 9 9 C 1.32138 * 120.96645 * 359.43554 * 8 4 3 10 10 C 1.39929 * 120.53627 * 179.97438 * 2 1 3 11 11 C 1.47833 * 120.94136 * 0.02562 * 10 2 1 12 12 O 1.21555 * 119.99983 * 35.83666 * 11 10 2 13 13 N 1.34769 * 120.00254 * 215.83257 * 11 10 2 14 14 C 1.46667 * 125.34315 * 185.61608 * 13 11 10 15 15 C 1.53723 * 107.94904 * 180.54862 * 14 13 11 16 16 H 1.08993 * 112.56651 * 139.71782 * 15 14 13 17 17 C 1.53696 * 109.34103 * 266.25722 * 15 14 13 18 18 N 1.46638 * 108.01093 * 127.55197 * 17 15 14 19 19 C 1.36938 * 125.32997 * 180.81412 * 18 17 15 20 20 H 1.08005 * 119.99878 * 174.96760 * 19 18 17 21 21 C 1.38809 * 119.99937 * 354.97067 * 19 18 17 22 22 N 1.31619 * 119.99861 * 5.10663 * 21 19 18 23 23 Si 1.86794 * 120.00029 * 185.10799 * 21 19 18 24 24 H 1.48504 * 109.47469 * 94.99521 * 23 21 19 25 25 H 1.48497 * 109.47390 * 214.99682 * 23 21 19 26 26 H 1.48506 * 109.47041 * 335.00016 * 23 21 19 27 27 C 1.46752 * 109.34071 * 0.83881 * 18 17 15 28 28 C 1.53926 * 106.72055 * 341.65420 * 27 18 17 29 29 H 1.09003 * 113.01224 * 150.83248 * 28 27 18 30 30 C 1.46786 * 125.33594 * 5.31731 * 13 11 10 31 31 H 1.08995 * 109.47274 * 85.37197 * 1 2 3 32 32 H 1.09008 * 109.47179 * 205.37071 * 1 2 3 33 33 H 1.09000 * 109.47073 * 325.36380 * 1 2 3 34 34 H 1.08999 * 109.47531 * 359.97438 * 5 4 3 35 35 H 1.09004 * 109.47005 * 59.99821 * 6 5 4 36 36 H 1.08992 * 109.47281 * 299.99511 * 6 5 4 37 37 H 1.09005 * 109.47288 * 179.97438 * 6 5 4 38 38 H 1.08989 * 109.46854 * 299.99532 * 7 5 4 39 39 H 1.08997 * 109.46834 * 60.00058 * 7 5 4 40 40 H 1.09001 * 109.46827 * 180.02562 * 7 5 4 41 41 H 1.08003 * 120.53863 * 180.27500 * 9 8 4 42 42 H 1.09000 * 109.77528 * 300.17434 * 14 13 11 43 43 H 1.09000 * 109.76787 * 60.92423 * 14 13 11 44 44 H 1.09001 * 109.75911 * 247.19396 * 17 15 14 45 45 H 1.09002 * 109.75842 * 7.90982 * 17 15 14 46 46 H 0.97001 * 119.99405 * 179.97438 * 22 21 19 47 47 H 1.09007 * 110.00426 * 222.34261 * 27 18 17 48 48 H 1.08989 * 110.00979 * 100.97399 * 27 18 17 49 49 H 1.08993 * 110.02283 * 280.77028 * 30 13 11 50 50 H 1.09000 * 110.02644 * 42.19230 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4971 1.1482 0.0005 5 6 4.2166 2.4722 0.0011 6 6 5.0934 2.5757 1.2506 7 6 5.0944 2.5761 -1.2479 8 7 4.2062 0.0362 -0.0044 9 6 3.6164 -1.1462 0.0011 10 6 2.2180 -1.2052 0.0005 11 6 1.5121 -2.5041 0.0006 12 8 0.4723 -2.6308 -0.6161 13 7 2.0214 -3.5479 0.6842 14 6 1.4860 -4.9133 0.6710 15 6 2.3609 -5.7742 1.5964 16 1 1.7760 -6.4737 2.1935 17 6 3.4570 -6.4612 0.7665 18 7 4.7499 -6.1719 1.3949 19 6 5.9671 -6.5993 0.9355 20 1 6.8738 -6.2683 1.4200 21 6 6.0355 -7.4579 -0.1531 22 7 4.9393 -7.7815 -0.8059 23 14 7.6831 -8.1541 -0.6914 24 1 7.8811 -9.4906 -0.0750 25 1 7.7067 -8.2829 -2.1706 26 1 8.7717 -7.2424 -0.2564 27 6 4.5352 -5.3530 2.5937 28 6 3.1294 -4.7395 2.4649 29 1 2.6567 -4.5513 3.4289 30 6 3.2027 -3.4979 1.5541 31 1 -0.3633 0.0829 -1.0243 32 1 -0.3634 -0.9286 0.4404 33 1 -0.3633 0.8455 0.5841 34 1 3.4872 3.2822 0.0005 35 1 5.8228 1.7658 1.2508 36 1 4.4681 2.5018 2.1403 37 1 5.6142 3.5333 1.2508 38 1 5.8237 1.7663 -1.2477 39 1 4.4697 2.5024 -2.1381 40 1 5.6152 3.5337 -1.2473 41 1 4.2039 -2.0525 0.0015 42 1 0.4580 -4.9099 1.0335 43 1 1.5181 -5.3121 -0.3429 44 1 3.2874 -7.5379 0.7513 45 1 3.4468 -6.0721 -0.2516 46 1 4.9873 -8.3813 -1.5667 47 1 5.2840 -4.5624 2.6442 48 1 4.5898 -5.9765 3.4859 49 1 4.1109 -3.5262 0.9521 50 1 3.1830 -2.5911 2.1586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049099409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:26 Heat of formation + Delta-G solvation = 21.453614 kcal Electronic energy + Delta-G solvation = -31087.971120 eV Core-core repulsion = 27115.084779 eV Total energy + Delta-G solvation = -3972.886341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.66601 -41.37740 -39.68227 -36.81535 -36.68425 -35.43287 -34.16164 -33.15888 -31.80676 -31.16067 -29.74137 -28.06559 -27.51160 -27.12065 -26.30293 -24.54109 -24.40453 -21.94644 -21.67137 -20.95257 -20.79179 -19.26459 -18.89856 -18.24096 -17.62380 -17.32260 -16.66964 -16.57427 -16.36327 -15.79159 -15.57523 -15.28135 -15.23568 -14.71460 -14.59446 -14.44969 -14.33514 -14.05378 -13.72716 -13.65500 -13.60989 -13.31594 -13.21877 -13.16977 -13.03714 -12.97155 -12.73492 -12.67933 -12.25612 -12.17736 -11.97333 -11.90049 -11.87853 -11.85312 -11.73572 -11.53965 -11.37994 -11.07233 -10.67053 -10.60237 -10.46991 -9.74888 -8.85137 -7.84906 -5.18594 -0.69716 -0.17870 1.46791 1.47322 1.48340 1.56058 1.76366 2.48116 2.50192 2.63726 2.85406 3.15853 3.19069 3.33240 3.45872 3.58047 3.73200 3.81311 3.85357 3.97046 4.01779 4.15257 4.18065 4.25895 4.35183 4.46754 4.49308 4.51823 4.59212 4.68017 4.69746 4.81192 4.83785 4.84628 4.89221 4.93526 4.95411 5.03418 5.06823 5.07482 5.16589 5.22096 5.31872 5.36748 5.41553 5.50369 5.65485 5.72399 5.79305 6.22910 6.30423 6.83486 6.86743 7.13079 7.82143 8.42942 9.25223 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.003325 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.652535 B = 8418.441756 C = 9828.048708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.227 3.773 3 N -0.528 5.528 4 C 0.338 3.662 5 C -0.029 4.029 6 C -0.136 4.136 7 C -0.138 4.138 8 N -0.525 5.525 9 C 0.188 3.812 10 C -0.254 4.254 11 C 0.584 3.416 12 O -0.557 6.557 13 N -0.600 5.600 14 C 0.126 3.874 15 C -0.110 4.110 16 H 0.118 0.882 17 C 0.196 3.804 18 N -0.622 5.622 19 C -0.237 4.237 20 H 0.085 0.915 21 C -0.063 4.063 22 N -0.949 5.949 23 Si 0.970 3.030 24 H -0.289 1.289 25 H -0.300 1.300 26 H -0.266 1.266 27 C 0.139 3.861 28 C -0.092 4.092 29 H 0.135 0.865 30 C 0.111 3.889 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.176 0.824 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.009 0.991 45 H 0.007 0.993 46 H 0.244 0.756 47 H 0.047 0.953 48 H 0.032 0.968 49 H 0.060 0.940 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 20.029 7.027 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.081 3.919 3 N -0.243 5.243 4 C 0.072 3.928 5 C -0.049 4.049 6 C -0.194 4.194 7 C -0.196 4.196 8 N -0.239 5.239 9 C 0.021 3.979 10 C -0.261 4.261 11 C 0.372 3.628 12 O -0.437 6.437 13 N -0.332 5.332 14 C 0.004 3.996 15 C -0.130 4.130 16 H 0.136 0.864 17 C 0.071 3.929 18 N -0.349 5.349 19 C -0.366 4.366 20 H 0.103 0.897 21 C -0.256 4.256 22 N -0.598 5.598 23 Si 0.800 3.200 24 H -0.216 1.216 25 H -0.227 1.227 26 H -0.191 1.191 27 C 0.014 3.986 28 C -0.112 4.112 29 H 0.153 0.847 30 C -0.011 4.011 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.193 0.807 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.027 0.973 45 H 0.025 0.975 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.050 0.950 49 H 0.078 0.922 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.557 20.776 6.511 22.470 hybrid contribution 0.533 -2.106 -0.981 2.384 sum -5.024 18.670 5.531 20.109 Atomic orbital electron populations 1.20907 0.85466 1.04644 1.04805 1.22214 0.98816 0.86180 0.84726 1.68319 1.09816 1.29236 1.16894 1.24125 0.86566 0.95776 0.86367 1.20222 0.97389 0.88752 0.98526 1.21775 0.99099 1.03745 0.94761 1.21791 0.99121 1.03763 0.94914 1.68327 1.41216 0.98381 1.16013 1.23843 0.90910 0.96951 0.86162 1.21441 0.96523 0.95490 1.12678 1.17527 0.83914 0.82695 0.78649 1.90751 1.24037 1.84022 1.44872 1.48179 1.30033 1.09135 1.45813 1.21775 0.97992 0.80224 0.99630 1.23019 0.96370 0.97154 0.96446 0.86370 1.20799 0.83153 0.95966 0.93010 1.44489 1.02563 1.60568 1.27230 1.19424 0.84981 1.21606 1.10575 0.89726 1.25566 1.00209 1.00842 0.98974 1.70187 1.27464 1.39781 1.22356 0.85171 0.79886 0.78526 0.76464 1.21572 1.22719 1.19091 1.21385 0.94534 0.93356 0.89368 1.22992 0.96291 0.92773 0.99131 0.84723 1.22316 0.87226 0.99665 0.91882 0.88641 0.89991 0.88064 0.87285 0.92429 0.93020 0.89024 0.92550 0.93562 0.88871 0.80723 0.89603 0.93278 0.97289 0.97490 0.94657 0.93446 0.95030 0.92181 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.19 9.32 71.24 0.66 -1.53 16 2 C 0.23 5.97 6.86 42.92 0.29 6.27 16 3 N -0.53 -13.45 10.22 -175.03 -1.79 -15.24 16 4 C 0.34 8.24 6.34 138.70 0.88 9.12 16 5 C -0.03 -0.50 3.25 -11.54 -0.04 -0.54 16 6 C -0.14 -1.99 9.09 71.98 0.65 -1.34 16 7 C -0.14 -2.19 9.08 71.99 0.65 -1.53 16 8 N -0.53 -14.16 9.77 -186.79 -1.82 -15.99 16 9 C 0.19 5.27 9.60 85.07 0.82 6.09 16 10 C -0.25 -7.26 5.46 -19.91 -0.11 -7.37 16 11 C 0.58 18.64 7.01 86.78 0.61 19.25 16 12 O -0.56 -20.17 15.09 -3.89 -0.06 -20.23 16 13 N -0.60 -18.42 3.31 -820.42 -2.72 -21.14 16 14 C 0.13 4.00 6.24 86.59 0.54 4.54 16 15 C -0.11 -3.56 4.02 -9.48 -0.04 -3.60 16 16 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 17 C 0.20 9.04 4.76 86.59 0.41 9.46 16 18 N -0.62 -29.48 3.37 -697.86 -2.35 -31.83 16 19 C -0.24 -12.62 10.24 84.03 0.86 -11.76 16 20 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 21 C -0.06 -3.48 5.48 84.86 0.47 -3.02 16 22 N -0.95 -56.16 10.28 21.65 0.22 -55.94 16 23 Si 0.97 45.09 29.56 68.60 2.03 47.12 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 C 0.14 4.86 6.37 86.64 0.55 5.41 16 28 C -0.09 -2.54 4.19 -9.25 -0.04 -2.58 16 29 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 30 C 0.11 3.09 4.53 86.72 0.39 3.48 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 1.94 6.17 -2.38 -0.01 1.93 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.11 1.63 8.09 -2.39 -0.02 1.61 16 35 H 0.06 1.00 8.01 -2.38 -0.02 0.98 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.06 1.06 8.00 -2.39 -0.02 1.04 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.18 4.97 5.62 -2.91 -0.02 4.96 16 42 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.05 1.83 7.44 -2.39 -0.02 1.81 16 44 H 0.01 0.47 7.32 -2.39 -0.02 0.46 16 45 H 0.01 0.37 6.66 -2.39 -0.02 0.36 16 46 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 47 H 0.05 1.59 7.95 -2.38 -0.02 1.57 16 48 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.96 6.08 -2.39 -0.01 1.94 16 50 H 0.09 2.08 7.55 -2.39 -0.02 2.06 16 Total: -1.00 -69.06 391.18 2.02 -67.04 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.94 Total: 15.86 kcal Atomic # 6 Polarization: 22.78 SS G_CDS: 7.57 Total: 30.35 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -8.46 Total: -140.13 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.06 Total: -20.23 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.06 2.02 -67.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049099409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.493 kcal (2) G-P(sol) polarization free energy of solvation -69.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds