Wall clock time and date at job start Wed Apr 1 2020 04:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32136 * 119.90189 * 2 1 4 4 C 1.32081 * 120.07354 * 179.76053 * 3 2 1 5 5 C 1.50702 * 120.06665 * 180.25479 * 4 3 2 6 6 C 1.39444 * 119.86933 * 0.49351 * 4 3 2 7 7 C 1.48152 * 120.09431 * 179.73970 * 6 4 3 8 8 O 1.21516 * 120.00138 * 284.09983 * 7 6 4 9 9 N 1.34784 * 119.99882 * 104.10485 * 7 6 4 10 10 C 1.46807 * 119.57535 * 4.99159 * 9 7 6 11 11 C 1.53468 * 107.58923 * 232.05802 * 10 9 7 12 12 C 1.52741 * 108.43949 * 301.91729 * 11 10 9 13 13 C 1.53014 * 110.80209 * 63.77215 * 12 11 10 14 14 H 1.09000 * 111.38531 * 68.76553 * 13 12 11 15 15 C 1.45115 * 119.57657 * 184.72049 * 9 7 6 16 16 H 1.08991 * 109.97407 * 11.92697 * 15 9 7 17 17 C 1.54419 * 111.60583 * 248.64321 * 15 9 7 18 18 C 1.54565 * 102.44959 * 203.42079 * 17 15 9 19 19 N 1.48211 * 107.11064 * 191.93191 * 13 12 11 20 20 C 1.36938 * 125.76375 * 270.85198 * 19 13 12 21 21 H 1.07999 * 120.00326 * 0.02562 * 20 19 13 22 22 C 1.38813 * 119.99845 * 180.02562 * 20 19 13 23 23 N 1.31615 * 120.00075 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99996 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47171 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47216 * 120.00256 * 24 22 20 27 27 H 1.48501 * 109.47207 * 240.00045 * 24 22 20 28 28 N 1.33004 * 119.80794 * 359.76325 * 6 4 3 29 29 C 1.31795 * 119.92595 * 359.97438 * 28 6 4 30 30 C 1.50701 * 119.94009 * 180.02562 * 29 28 6 31 31 H 1.09001 * 109.47106 * 269.72644 * 1 2 3 32 32 H 1.09003 * 109.46669 * 149.72512 * 1 2 3 33 33 H 1.08994 * 109.47011 * 29.72171 * 1 2 3 34 34 H 1.09003 * 109.46729 * 274.97591 * 5 4 3 35 35 H 1.08999 * 109.46902 * 34.97128 * 5 4 3 36 36 H 1.08996 * 109.47051 * 154.97495 * 5 4 3 37 37 H 1.09000 * 109.83364 * 351.57528 * 10 9 7 38 38 H 1.08998 * 109.83297 * 112.47023 * 10 9 7 39 39 H 1.08994 * 109.64115 * 61.60651 * 11 10 9 40 40 H 1.09004 * 109.64002 * 182.23361 * 11 10 9 41 41 H 1.09000 * 109.20874 * 184.11424 * 12 11 10 42 42 H 1.08996 * 109.20898 * 303.47024 * 12 11 10 43 43 H 1.09000 * 110.81211 * 321.65917 * 17 15 9 44 44 H 1.09002 * 110.81551 * 84.98028 * 17 15 9 45 45 H 1.09003 * 109.88959 * 141.09012 * 18 17 15 46 46 H 1.09000 * 109.88581 * 262.25906 * 18 17 15 47 47 H 0.97006 * 120.00501 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.46810 * 269.98361 * 30 29 28 49 49 H 1.08998 * 109.46734 * 29.98000 * 30 29 28 50 50 H 1.08998 * 109.47325 * 149.97852 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0048 5 6 4.2376 2.4559 0.0106 6 6 4.1846 -0.0577 -0.0006 7 6 5.6662 -0.0590 -0.0011 8 8 6.2736 0.2011 -1.0208 9 7 6.3402 -0.3489 1.1295 10 6 5.6009 -0.7690 2.3263 11 6 6.0558 0.1231 3.4893 12 6 7.5668 -0.0291 3.6525 13 6 8.3016 0.4796 2.4105 14 1 8.2163 1.5619 2.3137 15 6 7.7877 -0.2475 1.1465 16 1 8.1353 0.2684 0.2515 17 6 8.4535 -1.6352 1.2704 18 6 9.8361 -1.2892 1.8684 19 7 9.7106 0.0341 2.5243 20 6 10.7219 0.7263 3.1353 21 1 10.5223 1.6860 3.5887 22 6 12.0035 0.1944 3.1720 23 7 12.2468 -0.9749 2.6190 24 14 13.3829 1.1382 4.0061 25 1 12.8526 2.4159 4.5460 26 1 13.9382 0.3245 5.1173 27 1 14.4546 1.4244 3.0188 28 7 3.5166 -1.2078 -0.0057 29 6 2.1987 -1.2026 -0.0052 30 6 1.4414 -2.5056 -0.0105 31 1 -0.3633 -0.0049 1.0277 32 1 -0.3633 -0.8876 -0.5181 33 1 -0.3633 0.8924 -0.5095 34 1 4.3451 2.8177 -1.0120 35 1 3.6865 3.1892 0.5993 36 1 5.2244 2.3058 0.4485 37 1 4.5305 -0.6453 2.1622 38 1 5.8225 -1.8124 2.5506 39 1 5.8138 1.1629 3.2698 40 1 5.5551 -0.1871 4.4065 41 1 7.8930 0.5424 4.5215 42 1 7.8069 -1.0813 3.8048 43 1 7.8886 -2.2768 1.9467 44 1 8.5577 -2.1036 0.2917 45 1 10.1215 -2.0423 2.6030 46 1 10.5818 -1.2413 1.0748 47 1 13.1424 -1.3468 2.6449 48 1 1.2583 -2.8152 -1.0394 49 1 2.0287 -3.2691 0.4996 50 1 0.4898 -2.3748 0.5046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049586339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:31 Heat of formation + Delta-G solvation = 40.322771 kcal Electronic energy + Delta-G solvation = -31522.222905 eV Core-core repulsion = 27550.154793 eV Total energy + Delta-G solvation = -3972.068113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.78909 -40.13526 -37.99092 -35.37329 -35.21750 -34.55469 -32.46012 -32.19348 -30.60658 -29.50692 -28.88120 -28.23284 -26.57860 -24.77086 -24.29772 -23.67310 -22.44588 -22.00275 -20.56246 -20.01589 -18.51034 -18.27185 -17.45104 -16.89229 -16.30304 -15.64876 -15.45806 -14.77477 -14.71676 -14.46071 -14.26966 -13.88390 -13.80492 -13.72983 -13.44822 -13.43752 -13.30566 -13.02901 -12.86718 -12.57523 -12.49164 -12.45051 -12.20756 -12.07056 -11.93610 -11.81640 -11.40878 -11.15067 -11.02852 -10.99134 -10.81684 -10.66760 -10.52452 -10.31406 -10.06232 -9.93433 -9.64937 -9.63115 -9.27069 -9.07079 -8.64916 -8.36816 -6.87913 -5.71983 -3.06087 0.30849 0.79925 2.41302 2.88117 3.22824 3.39803 3.45331 3.47756 3.62673 3.84383 4.06080 4.23987 4.47521 4.59708 4.64138 4.88309 4.91241 5.10058 5.10645 5.13591 5.18984 5.24291 5.25074 5.32004 5.38889 5.42177 5.48453 5.50555 5.53870 5.60138 5.63661 5.68972 5.80274 5.83014 5.96859 6.06470 6.08692 6.17132 6.26483 6.33501 6.51215 6.54073 6.68459 6.90039 6.95244 7.02358 7.42673 7.45745 7.54065 7.59883 7.81125 8.10880 8.21162 9.17703 9.78506 10.44567 11.39634 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.002755 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.827857 B =10161.359376 C =10355.207113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.094 3.906 3 N -0.435 5.435 4 C 0.117 3.883 5 C -0.104 4.104 6 C 0.051 3.949 7 C 0.578 3.422 8 O -0.522 6.522 9 N -0.575 5.575 10 C 0.114 3.886 11 C -0.133 4.133 12 C -0.130 4.130 13 C 0.158 3.842 14 H 0.061 0.939 15 C 0.130 3.870 16 H 0.104 0.896 17 C -0.151 4.151 18 C 0.180 3.820 19 N -0.598 5.598 20 C -0.225 4.225 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 N -0.406 5.406 29 C 0.073 3.927 30 C -0.101 4.101 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.054 0.946 47 H 0.252 0.748 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.084 -0.440 -2.451 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.048 4.048 3 N -0.151 5.151 4 C -0.023 4.023 5 C -0.162 4.162 6 C -0.092 4.092 7 C 0.362 3.638 8 O -0.397 6.397 9 N -0.306 5.306 10 C -0.009 4.009 11 C -0.172 4.172 12 C -0.170 4.170 13 C 0.049 3.951 14 H 0.079 0.921 15 C 0.026 3.974 16 H 0.122 0.878 17 C -0.190 4.190 18 C 0.056 3.944 19 N -0.323 5.323 20 C -0.353 4.353 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 N -0.122 5.122 29 C -0.070 4.070 30 C -0.158 4.158 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.101 0.899 49 H 0.101 0.899 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.408 -0.319 -2.953 24.588 hybrid contribution 0.765 0.275 0.492 0.950 sum -23.643 -0.044 -2.461 23.771 Atomic orbital electron populations 1.20775 0.87432 1.04190 1.03678 1.22344 0.98480 0.88828 0.95177 1.68200 1.07616 1.28918 1.10355 1.22175 0.90033 0.96078 0.94040 1.20776 0.99282 0.91864 1.04294 1.21946 0.95973 0.90309 1.00934 1.17700 0.84749 0.77409 0.83987 1.90821 1.68185 1.49032 1.31696 1.47569 1.07479 1.64775 1.10803 1.21782 0.94998 0.99275 0.84862 1.21955 0.98461 0.99610 0.97191 1.22140 0.91975 1.02426 1.00469 1.21405 0.86332 0.96434 0.90952 0.92080 1.22005 0.76287 0.98199 1.00926 0.87813 1.23101 0.99459 0.95633 1.00789 1.21373 0.90065 0.86969 0.96021 1.44964 1.02641 1.18859 1.65841 1.19070 0.87069 1.00748 1.28459 0.90353 1.24794 0.97378 0.97207 1.00988 1.69956 1.20261 1.17631 1.48934 0.86055 0.82306 0.78807 0.78642 1.20535 1.21828 1.21764 1.68321 1.08254 1.28073 1.07602 1.22168 0.90077 0.96931 0.97854 1.20742 0.99212 0.92251 1.03641 0.89646 0.89818 0.89945 0.89168 0.89550 0.90060 0.91268 0.90707 0.91816 0.91248 0.91940 0.91723 0.92167 0.91814 0.93868 0.92788 0.93765 0.89850 0.89859 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 9.37 36.01 0.34 -0.24 16 2 C 0.09 0.94 6.79 -82.28 -0.56 0.38 16 3 N -0.44 -5.27 10.34 -5.23 -0.05 -5.32 16 4 C 0.12 1.54 6.82 -82.04 -0.56 0.98 16 5 C -0.10 -1.19 9.89 36.01 0.36 -0.83 16 6 C 0.05 0.75 4.59 -82.84 -0.38 0.37 16 7 C 0.58 9.78 5.69 -12.19 -0.07 9.71 16 8 O -0.52 -10.47 16.46 5.35 0.09 -10.38 16 9 N -0.58 -9.31 2.73 -165.77 -0.45 -9.76 16 10 C 0.11 1.54 6.06 -3.63 -0.02 1.52 16 11 C -0.13 -1.77 6.11 -26.62 -0.16 -1.93 16 12 C -0.13 -2.23 5.10 -26.86 -0.14 -2.37 16 13 C 0.16 3.13 3.62 -66.14 -0.24 2.89 16 14 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.13 2.44 3.08 -67.09 -0.21 2.23 16 16 H 0.10 2.17 7.00 -51.93 -0.36 1.81 16 17 C -0.15 -2.93 6.08 -25.16 -0.15 -3.08 16 18 C 0.18 4.33 5.22 -2.27 -0.01 4.32 16 19 N -0.60 -14.73 2.94 -161.06 -0.47 -15.20 16 20 C -0.23 -6.10 10.30 -15.06 -0.16 -6.26 16 21 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 22 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 23 N -0.92 -26.76 10.36 55.49 0.57 -26.18 16 24 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 N -0.41 -5.57 9.92 -5.88 -0.06 -5.63 16 29 C 0.07 0.76 6.79 -82.42 -0.56 0.20 16 30 C -0.10 -0.65 9.37 36.01 0.34 -0.31 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.30 6.70 -51.93 -0.35 -0.05 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.00 6.90 -51.93 -0.36 0.64 16 37 H 0.07 0.88 5.92 -51.93 -0.31 0.57 16 38 H 0.07 1.01 7.51 -51.93 -0.39 0.62 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.19 7.11 -51.93 -0.37 0.82 16 43 H 0.06 1.09 6.78 -51.93 -0.35 0.74 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.04 1.13 7.63 -51.93 -0.40 0.74 16 46 H 0.05 1.45 7.31 -51.93 -0.38 1.07 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.08 0.31 6.70 -51.93 -0.35 -0.03 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -32.75 389.22 -9.62 -42.37 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.81 Total: 0.06 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -2.28 Total: 7.26 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.46 Total: -62.10 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.75 -9.62 -42.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049586339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.694 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds