Wall clock time and date at job start Wed Apr 1 2020 04:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32142 * 119.90589 * 2 1 4 4 C 1.32076 * 120.07463 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.06459 * 180.02562 * 4 3 2 6 6 C 1.39444 * 119.87402 * 0.02562 * 4 3 2 7 7 C 1.48141 * 120.09797 * 180.02562 * 6 4 3 8 8 O 1.21523 * 119.99821 * 75.62152 * 7 6 4 9 9 N 1.34777 * 120.00126 * 255.61740 * 7 6 4 10 10 C 1.44503 * 116.65184 * 1.21731 * 9 7 6 11 11 C 1.51824 * 112.60961 * 154.31056 * 10 9 7 12 12 C 1.51320 * 111.95894 * 42.68795 * 11 10 9 13 13 C 1.50777 * 113.47178 * 304.55101 * 12 11 10 14 14 H 1.09000 * 108.56943 * 169.45761 * 13 12 11 15 15 C 1.53893 * 110.58784 * 289.11639 * 13 12 11 16 16 N 1.46827 * 107.49880 * 140.15350 * 15 13 12 17 17 C 1.36937 * 125.37882 * 181.04594 * 16 15 13 18 18 H 1.08006 * 119.99956 * 359.97091 * 17 16 15 19 19 C 1.38809 * 120.00289 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00173 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47434 * 89.99682 * 21 19 17 23 23 H 1.48498 * 109.47198 * 209.99654 * 21 19 17 24 24 H 1.48498 * 109.47084 * 329.99582 * 21 19 17 25 25 C 1.46901 * 109.24792 * 1.04454 * 16 15 13 26 26 C 1.44120 * 116.65157 * 181.47628 * 9 7 6 27 27 H 1.08998 * 109.49285 * 75.21402 * 26 9 7 28 28 N 1.33003 * 119.80201 * 359.97438 * 6 4 3 29 29 C 1.31799 * 119.93244 * 359.71751 * 28 6 4 30 30 C 1.50692 * 119.94225 * 180.29388 * 29 28 6 31 31 H 1.09000 * 109.46646 * 90.00304 * 1 2 3 32 32 H 1.08995 * 109.46997 * 330.00515 * 1 2 3 33 33 H 1.09000 * 109.47299 * 210.00353 * 1 2 3 34 34 H 1.08994 * 109.46894 * 95.35762 * 5 4 3 35 35 H 1.09000 * 109.47275 * 215.36160 * 5 4 3 36 36 H 1.09005 * 109.46806 * 335.35817 * 5 4 3 37 37 H 1.08997 * 108.82853 * 275.31955 * 10 9 7 38 38 H 1.09001 * 108.82694 * 33.64277 * 10 9 7 39 39 H 1.09004 * 109.14937 * 281.96876 * 11 10 9 40 40 H 1.08994 * 108.87788 * 163.23470 * 11 10 9 41 41 H 1.08997 * 108.68507 * 183.52114 * 12 11 10 42 42 H 1.09003 * 108.68251 * 65.57931 * 12 11 10 43 43 H 1.08998 * 109.84761 * 20.67015 * 15 13 12 44 44 H 1.08995 * 109.93571 * 259.69058 * 15 13 12 45 45 H 0.97000 * 120.00105 * 179.97438 * 20 19 17 46 46 H 1.08999 * 110.09073 * 222.86688 * 25 16 15 47 47 H 1.08998 * 110.13618 * 101.31606 * 25 16 15 48 48 H 1.09003 * 109.47298 * 270.26269 * 30 29 28 49 49 H 1.09004 * 109.47317 * 30.26146 * 30 29 28 50 50 H 1.09003 * 109.47475 * 150.26570 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1455 0.0000 4 6 3.4866 1.1494 0.0005 5 6 4.2377 2.4558 0.0011 6 6 4.1847 -0.0577 0.0005 7 6 5.6661 -0.0592 0.0017 8 8 6.2732 0.2011 1.0217 9 7 6.3406 -0.3492 -1.1286 10 6 5.5472 -0.6212 -2.3053 11 6 6.2938 -0.3258 -3.5938 12 6 7.7249 -0.8150 -3.5434 13 6 8.5050 -0.2700 -2.3739 14 1 9.4496 -0.8096 -2.3049 15 6 8.7945 1.2290 -2.5678 16 7 8.6280 1.8831 -1.2639 17 6 8.7786 3.2229 -1.0241 18 1 9.0415 3.8899 -1.8318 19 6 8.5933 3.7238 0.2572 20 7 8.2725 2.9110 1.2415 21 14 8.7980 5.5515 0.5842 22 1 7.4943 6.2372 0.3958 23 1 9.2676 5.7555 1.9781 24 1 9.7948 6.1150 -0.3614 25 6 8.2744 0.8734 -0.2572 26 6 7.7789 -0.3619 -1.0379 27 1 8.1031 -1.2685 -0.5268 28 7 3.5166 -1.2078 0.0005 29 6 2.1986 -1.2027 0.0061 30 6 1.4414 -2.5055 0.0128 31 1 -0.3632 -0.0001 -1.0277 32 1 -0.3633 0.8900 0.5137 33 1 -0.3634 -0.8899 0.5139 34 1 4.5016 2.7227 1.0244 35 1 5.1456 2.3533 -0.5933 36 1 3.6091 3.2365 -0.4275 37 1 5.2541 -1.6710 -2.2970 38 1 4.6475 -0.0066 -2.2727 39 1 6.2933 0.7501 -3.7688 40 1 5.7802 -0.8177 -4.4197 41 1 8.2270 -0.5214 -4.4652 42 1 7.7200 -1.9033 -3.4830 43 1 8.0921 1.6516 -3.2862 44 1 9.8155 1.3673 -2.9235 45 1 8.1434 3.2610 2.1369 46 1 7.4818 1.2506 0.3890 47 1 9.1501 0.6139 0.3376 48 1 1.2585 -2.8248 -1.0132 49 1 2.0285 -3.2643 0.5302 50 1 0.4895 -2.3700 0.5263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050090133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:38 Heat of formation + Delta-G solvation = 57.566893 kcal Electronic energy + Delta-G solvation = -32621.310283 eV Core-core repulsion = 28649.989931 eV Total energy + Delta-G solvation = -3971.320352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.52977 -40.20012 -37.63407 -35.44469 -34.94764 -34.27014 -33.10547 -32.02612 -30.23270 -29.72274 -28.99762 -27.33914 -25.88122 -25.61925 -24.12678 -23.45859 -22.31057 -21.89315 -20.81847 -19.64068 -18.15907 -17.84398 -17.33994 -16.44374 -15.97718 -15.63478 -15.19130 -15.03623 -14.59912 -14.29720 -14.11048 -14.02181 -13.72544 -13.58018 -13.39431 -13.23120 -13.11157 -13.00142 -12.59984 -12.28647 -12.16946 -12.08490 -12.04457 -11.83391 -11.64559 -11.53676 -11.50282 -11.10766 -10.94753 -10.77804 -10.75792 -10.60000 -10.37298 -10.26224 -10.06754 -9.90273 -9.57372 -9.33966 -8.87443 -8.72518 -8.34554 -7.89825 -6.66575 -5.49390 -2.92841 0.63198 1.10723 2.87631 3.24892 3.45292 3.50781 3.53058 3.54492 3.95481 4.15706 4.36777 4.54191 4.57834 4.83157 4.93458 4.94011 4.98404 5.11514 5.16051 5.25477 5.27074 5.34299 5.40413 5.41149 5.57240 5.58155 5.66089 5.67769 5.73463 5.77591 5.84461 5.95487 5.99993 6.03691 6.06191 6.08028 6.23544 6.26096 6.27308 6.46724 6.59649 6.64455 6.75198 6.80174 7.11327 7.26238 7.57893 7.73061 7.76856 7.78616 8.18455 8.50379 8.77733 9.34763 9.96462 10.60124 11.51832 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.004652 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.473717 B = 6017.481276 C = 7555.443539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.088 3.912 3 N -0.438 5.438 4 C 0.124 3.876 5 C -0.105 4.105 6 C 0.052 3.948 7 C 0.564 3.436 8 O -0.474 6.474 9 N -0.570 5.570 10 C 0.124 3.876 11 C -0.126 4.126 12 C -0.101 4.101 13 C -0.101 4.101 14 H 0.078 0.922 15 C 0.141 3.859 16 N -0.601 5.601 17 C -0.232 4.232 18 H 0.074 0.926 19 C -0.004 4.004 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.129 3.871 26 C 0.130 3.870 27 H 0.060 0.940 28 N -0.408 5.408 29 C 0.064 3.936 30 C -0.098 4.098 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.021 0.979 44 H 0.019 0.981 45 H 0.252 0.748 46 H 0.151 0.849 47 H 0.021 0.979 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.309 -11.166 -7.654 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.053 4.053 3 N -0.154 5.154 4 C -0.016 4.016 5 C -0.163 4.163 6 C -0.091 4.091 7 C 0.347 3.653 8 O -0.346 6.346 9 N -0.303 5.303 10 C 0.001 3.999 11 C -0.164 4.164 12 C -0.139 4.139 13 C -0.120 4.120 14 H 0.097 0.903 15 C 0.014 3.986 16 N -0.328 5.328 17 C -0.360 4.360 18 H 0.092 0.908 19 C -0.201 4.201 20 N -0.550 5.550 21 Si 0.735 3.265 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.005 3.995 26 C 0.026 3.974 27 H 0.078 0.922 28 N -0.124 5.124 29 C -0.079 4.079 30 C -0.156 4.156 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.168 0.832 47 H 0.039 0.961 48 H 0.099 0.901 49 H 0.098 0.902 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.881 -10.890 -6.955 18.965 hybrid contribution 0.239 0.909 0.058 0.941 sum -13.642 -9.982 -6.897 18.257 Atomic orbital electron populations 1.20775 0.87785 1.03977 1.03462 1.22285 0.98314 0.89000 0.95747 1.68238 1.07871 1.28757 1.10514 1.22376 0.89775 0.96587 0.92848 1.20822 0.99417 0.90970 1.05081 1.22117 0.96464 0.90072 1.00459 1.17685 0.84455 0.78346 0.84769 1.90863 1.66722 1.44709 1.32263 1.46397 1.06270 1.68883 1.08773 1.20692 0.93407 1.00067 0.85757 1.21135 0.96222 1.02792 0.96224 1.20534 0.94974 1.00044 0.98397 1.21296 0.98561 0.98374 0.93771 0.90337 1.21280 0.97307 0.89568 0.90398 1.44349 1.81841 1.03844 1.02740 1.18954 1.41241 0.81837 0.94000 0.90817 1.24793 1.02034 0.97447 0.95828 1.69920 1.52906 1.31972 1.00209 0.86249 0.77652 0.85389 0.77249 1.21675 1.21727 1.20920 1.22632 1.01351 0.84448 0.91096 1.21352 0.77574 1.01526 0.96923 0.92176 1.68250 1.08066 1.28264 1.07870 1.22062 0.90241 0.96711 0.98836 1.20722 0.99145 0.92393 1.03352 0.89888 0.90127 0.89909 0.88781 0.88922 0.90234 0.92536 0.92381 0.91032 0.90977 0.91502 0.92428 0.96103 0.96293 0.93723 0.83195 0.96087 0.90072 0.90207 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 9.79 36.01 0.35 -0.47 16 2 C 0.09 1.13 6.79 -82.28 -0.56 0.57 16 3 N -0.44 -6.92 10.34 -5.23 -0.05 -6.97 16 4 C 0.12 2.20 6.80 -82.04 -0.56 1.64 16 5 C -0.11 -1.93 9.68 36.01 0.35 -1.58 16 6 C 0.05 0.95 4.32 -82.84 -0.36 0.59 16 7 C 0.56 11.73 5.32 -12.19 -0.06 11.66 16 8 O -0.47 -11.73 13.83 5.35 0.07 -11.65 16 9 N -0.57 -10.75 3.08 -170.70 -0.53 -11.27 16 10 C 0.12 1.89 5.69 -5.70 -0.03 1.86 16 11 C -0.13 -1.67 5.85 -28.18 -0.16 -1.84 16 12 C -0.10 -1.37 5.09 -28.69 -0.15 -1.52 16 13 C -0.10 -1.75 2.97 -91.61 -0.27 -2.02 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 15 C 0.14 2.94 6.74 -3.40 -0.02 2.91 16 16 N -0.60 -15.54 3.39 -171.30 -0.58 -16.12 16 17 C -0.23 -6.50 10.25 -15.06 -0.15 -6.66 16 18 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 19 C 0.00 -0.11 5.48 -17.43 -0.10 -0.21 16 20 N -0.90 -26.86 10.18 55.49 0.56 -26.30 16 21 Si 0.90 22.32 29.55 -169.99 -5.02 17.30 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.13 3.29 4.65 -3.14 -0.01 3.27 16 26 C 0.13 2.63 3.27 -68.85 -0.23 2.41 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 N -0.41 -6.62 10.30 -5.89 -0.06 -6.69 16 29 C 0.06 0.83 6.79 -82.43 -0.56 0.27 16 30 C -0.10 -0.81 9.78 36.00 0.35 -0.46 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.46 5.93 -51.93 -0.31 0.16 16 34 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 35 H 0.09 1.94 7.28 -51.93 -0.38 1.56 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.90 6.65 -51.93 -0.35 0.55 16 39 H 0.07 1.05 7.10 -51.93 -0.37 0.69 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.02 0.43 6.71 -51.93 -0.35 0.08 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.15 4.17 2.78 -53.43 -0.15 4.02 16 47 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.08 0.47 5.94 -51.93 -0.31 0.16 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -33.83 383.75 -9.67 -43.50 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.67 Total: 2.00 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -2.17 Total: 10.43 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -0.66 Total: -67.35 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.65 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.83 -9.67 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050090133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.066 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds