Wall clock time and date at job start Wed Apr 1 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31879 * 118.95037 * 2 1 4 4 C 1.32144 * 120.96173 * 179.97438 * 3 2 1 5 5 C 1.39966 * 118.92150 * 0.02562 * 4 3 2 6 6 C 1.47833 * 120.93255 * 179.97438 * 5 4 3 7 7 O 1.21555 * 119.99736 * 130.68222 * 6 5 4 8 8 N 1.34777 * 120.00515 * 310.94985 * 6 5 4 9 9 C 1.46936 * 120.70210 * 354.93135 * 8 6 5 10 10 C 1.52718 * 109.17993 * 234.12214 * 9 8 6 11 11 C 1.53169 * 109.34995 * 305.01585 * 10 9 8 12 12 C 1.52226 * 109.65237 * 60.03670 * 11 10 9 13 13 C 1.54483 * 110.29113 * 178.01325 * 12 11 10 14 14 C 1.55038 * 101.52988 * 276.21139 * 13 12 11 15 15 N 1.47486 * 104.89914 * 323.64976 * 14 13 12 16 16 C 1.36945 * 125.65966 * 203.99255 * 15 14 13 17 17 H 1.07995 * 120.00042 * 157.62393 * 16 15 14 18 18 C 1.38813 * 119.99577 * 337.62030 * 16 15 14 19 19 N 1.31618 * 119.99579 * 159.67246 * 18 16 15 20 20 Si 1.86793 * 120.00424 * 339.67601 * 18 16 15 21 21 H 1.48505 * 109.47299 * 85.12279 * 20 18 16 22 22 H 1.48498 * 109.47099 * 205.12065 * 20 18 16 23 23 H 1.48494 * 109.47069 * 325.12315 * 20 18 16 24 24 C 1.47181 * 108.67958 * 24.01638 * 15 14 13 25 25 C 1.47075 * 120.70645 * 175.20665 * 8 6 5 26 26 C 1.39924 * 118.12591 * 0.27282 * 5 4 3 27 27 C 1.50700 * 120.53987 * 179.70685 * 26 5 4 28 28 N 1.31858 * 118.95099 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47220 * 89.99982 * 1 2 3 30 30 H 1.09005 * 109.47186 * 209.99704 * 1 2 3 31 31 H 1.09000 * 109.47118 * 329.99969 * 1 2 3 32 32 H 1.07997 * 120.53437 * 179.97438 * 4 3 2 33 33 H 1.09009 * 109.56355 * 354.00710 * 9 8 6 34 34 H 1.09001 * 109.56376 * 114.33482 * 9 8 6 35 35 H 1.09001 * 109.57397 * 184.98386 * 10 9 8 36 36 H 1.08997 * 109.35452 * 64.90963 * 10 9 8 37 37 H 1.08999 * 109.43617 * 299.97813 * 11 10 9 38 38 H 1.09002 * 109.40585 * 180.02562 * 11 10 9 39 39 H 1.09010 * 111.01157 * 34.26590 * 13 12 11 40 40 H 1.08996 * 111.01974 * 158.14408 * 13 12 11 41 41 H 1.08996 * 110.34929 * 204.79874 * 14 13 12 42 42 H 1.09001 * 110.44537 * 82.55206 * 14 13 12 43 43 H 0.96996 * 120.00271 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.91019 * 239.10291 * 24 15 14 45 45 H 1.08998 * 109.91318 * 117.83239 * 24 15 14 46 46 H 1.09000 * 109.58228 * 247.33675 * 25 8 6 47 47 H 1.08999 * 109.58011 * 7.73715 * 25 8 6 48 48 H 1.09002 * 109.47243 * 91.86921 * 27 26 5 49 49 H 1.09001 * 109.46883 * 211.87075 * 27 26 5 50 50 H 1.09000 * 109.47062 * 331.86981 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2004 0.0005 5 6 4.1855 -0.0002 0.0005 6 6 5.6638 -0.0002 0.0005 7 8 6.2716 -0.6864 0.7988 8 7 6.3378 0.7647 -0.8810 9 6 5.6231 1.5187 -1.9202 10 6 6.2043 1.1634 -3.2871 11 6 7.7159 1.4106 -3.2756 12 6 8.3683 0.5438 -2.2077 13 6 9.9000 0.7446 -2.2168 14 6 10.3338 -0.2315 -3.3406 15 7 9.4282 -1.3881 -3.2087 16 6 9.6908 -2.6610 -3.6403 17 1 9.1665 -3.4981 -3.2037 18 6 10.6309 -2.8751 -4.6389 19 7 11.1789 -4.0630 -4.7830 20 14 11.1184 -1.4773 -5.7780 21 1 12.1912 -0.6713 -5.1417 22 1 11.6139 -2.0350 -7.0620 23 1 9.9379 -0.6143 -6.0359 24 6 8.1951 -0.9472 -2.5369 25 6 7.8046 0.8578 -0.8271 26 6 3.4661 -1.2003 -0.0059 27 6 4.1856 -2.5244 -0.0129 28 7 2.1453 -1.1538 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.9817 2.1493 0.0001 33 1 4.5647 1.2591 -1.8967 34 1 5.7424 2.5875 -1.7428 35 1 5.7399 1.7837 -4.0537 36 1 6.0090 0.1126 -3.5006 37 1 7.9101 2.4610 -3.0589 38 1 8.1316 1.1577 -4.2510 39 1 10.1579 1.7727 -2.4711 40 1 10.3375 0.4587 -1.2603 41 1 11.3684 -0.5416 -3.1948 42 1 10.2127 0.2353 -4.3181 43 1 11.8355 -4.2128 -5.4810 44 1 8.0492 -1.5156 -1.6183 45 1 7.3414 -1.0840 -3.2006 46 1 8.0961 1.8665 -0.5343 47 1 8.1898 0.1396 -0.1033 48 1 4.3296 -2.8652 1.0124 49 1 3.5922 -3.2575 -0.5595 50 1 5.1554 -2.4084 -0.4967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054216100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:48 Heat of formation + Delta-G solvation = 42.698479 kcal Electronic energy + Delta-G solvation = -31621.715805 eV Core-core repulsion = 27649.750711 eV Total energy + Delta-G solvation = -3971.965094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.73949 -40.37121 -38.60387 -36.23438 -34.76622 -33.99004 -32.97636 -32.11876 -30.89457 -29.54877 -29.17443 -28.47208 -26.11180 -25.81279 -24.06856 -23.68194 -22.60145 -22.13113 -20.90778 -20.04442 -18.39177 -18.23422 -17.42710 -16.83328 -16.38458 -16.23890 -15.60908 -15.40217 -15.26961 -14.76927 -14.34959 -14.15784 -13.94983 -13.77008 -13.60967 -13.36546 -13.21015 -13.18929 -12.95816 -12.74023 -12.66153 -12.52386 -12.38718 -12.15418 -11.84860 -11.75248 -11.58007 -11.29042 -11.22410 -10.96445 -10.89520 -10.70849 -10.48773 -10.20025 -10.08874 -9.97883 -9.88454 -9.61230 -9.56350 -9.46705 -8.72062 -8.63756 -6.97195 -5.93394 -3.26093 0.25138 0.70425 2.43682 2.76275 3.33732 3.34440 3.45830 3.48637 3.52164 3.68853 4.04818 4.16215 4.54095 4.55150 4.64485 4.75736 4.83860 4.85198 4.88409 5.02244 5.06001 5.15048 5.16831 5.19527 5.28668 5.37312 5.46268 5.46633 5.47382 5.59034 5.61049 5.66275 5.67965 5.73512 5.83942 5.84559 5.98659 6.05307 6.09976 6.13602 6.27074 6.35671 6.39470 6.58536 6.58923 6.68860 6.73780 6.80356 7.19368 7.71124 7.77538 7.94593 8.33918 8.86081 9.70345 10.21307 11.23276 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.003123 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.052727 B = 8964.287746 C = 9492.468023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.333 3.667 3 N -0.526 5.526 4 C 0.187 3.813 5 C -0.242 4.242 6 C 0.572 3.428 7 O -0.520 6.520 8 N -0.599 5.599 9 C 0.105 3.895 10 C -0.138 4.138 11 C -0.102 4.102 12 C -0.087 4.087 13 C -0.120 4.120 14 C 0.113 3.887 15 N -0.608 5.608 16 C -0.239 4.239 17 H 0.089 0.911 18 C 0.022 3.978 19 N -0.911 5.911 20 Si 0.886 3.114 21 H -0.286 1.286 22 H -0.304 1.304 23 H -0.277 1.277 24 C 0.150 3.850 25 C 0.131 3.869 26 C 0.233 3.767 27 C -0.111 4.111 28 N -0.520 5.520 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.173 0.827 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.024 0.976 43 H 0.263 0.737 44 H 0.033 0.967 45 H 0.030 0.970 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.764 15.091 8.538 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 N -0.241 5.241 4 C 0.020 3.980 5 C -0.250 4.250 6 C 0.358 3.642 7 O -0.396 6.396 8 N -0.332 5.332 9 C -0.018 4.018 10 C -0.176 4.176 11 C -0.139 4.139 12 C -0.089 4.089 13 C -0.159 4.159 14 C -0.012 4.012 15 N -0.335 5.335 16 C -0.366 4.366 17 H 0.107 0.893 18 C -0.176 4.176 19 N -0.555 5.555 20 Si 0.717 3.283 21 H -0.213 1.213 22 H -0.232 1.232 23 H -0.203 1.203 24 C 0.025 3.975 25 C 0.009 3.991 26 C 0.087 3.913 27 C -0.168 4.168 28 N -0.236 5.236 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.190 0.810 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.117 0.883 48 H 0.114 0.886 49 H 0.104 0.896 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.325 14.500 8.861 24.991 hybrid contribution 1.308 0.843 -0.946 1.821 sum -17.018 15.343 7.914 24.241 Atomic orbital electron populations 1.20630 0.85322 1.04412 1.04188 1.23484 0.98436 0.83322 0.88033 1.68309 1.09451 1.30087 1.16260 1.23444 0.89502 0.97520 0.87569 1.21580 0.96194 0.96551 1.10639 1.17761 0.85733 0.79502 0.81209 1.90829 1.69034 1.40581 1.39193 1.48040 1.07757 1.46609 1.30794 1.21801 0.96193 0.95928 0.87879 1.21912 0.96685 1.03230 0.95774 1.21368 0.94184 0.98710 0.99653 1.21402 0.95896 0.97444 0.94132 1.22710 0.93540 0.99230 1.00405 1.21960 0.95548 0.88538 0.95158 1.44806 1.12782 1.06070 1.69820 1.18632 1.21696 0.81407 1.14908 0.89343 1.25087 0.98395 0.95940 0.98203 1.69822 1.29003 1.22171 1.34462 0.86900 0.78111 0.82335 0.80975 1.21268 1.23156 1.20278 1.21336 0.89989 0.90114 0.96043 1.21633 0.77540 1.02206 0.97717 1.21909 0.88847 0.95425 0.85130 1.20912 1.00078 0.91162 1.04638 1.68231 1.09066 1.30086 1.16168 0.89223 0.89346 0.89388 0.81012 0.90470 0.90885 0.90629 0.90638 0.91938 0.90880 0.91389 0.90841 0.92519 0.95829 0.92740 0.94915 0.95234 0.91210 0.88325 0.88599 0.89576 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.31 36.01 0.37 -0.22 16 2 C 0.33 3.54 7.64 -157.07 -1.20 2.34 16 3 N -0.53 -5.61 10.32 -10.39 -0.11 -5.72 16 4 C 0.19 1.88 8.86 -16.77 -0.15 1.73 16 5 C -0.24 -2.90 4.83 -104.69 -0.51 -3.41 16 6 C 0.57 7.74 6.38 -12.33 -0.08 7.66 16 7 O -0.52 -8.73 15.25 5.32 0.08 -8.65 16 8 N -0.60 -7.16 2.86 -174.52 -0.50 -7.66 16 9 C 0.10 0.98 5.32 -3.95 -0.02 0.96 16 10 C -0.14 -1.52 5.89 -26.79 -0.16 -1.67 16 11 C -0.10 -1.30 4.59 -27.04 -0.12 -1.42 16 12 C -0.09 -1.30 0.53 -154.09 -0.08 -1.38 16 13 C -0.12 -1.89 5.99 -24.88 -0.15 -2.04 16 14 C 0.11 2.39 4.41 -2.43 -0.01 2.38 16 15 N -0.61 -14.65 3.17 -170.22 -0.54 -15.19 16 16 C -0.24 -6.85 10.57 -15.05 -0.16 -7.01 16 17 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 18 C 0.02 0.65 5.45 -17.43 -0.09 0.56 16 19 N -0.91 -28.37 13.97 55.49 0.78 -27.60 16 20 Si 0.89 22.65 24.29 -169.99 -4.13 18.52 16 21 H -0.29 -7.02 6.65 56.52 0.38 -6.64 16 22 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 23 H -0.28 -6.90 6.63 56.52 0.37 -6.53 16 24 C 0.15 2.96 6.14 -3.32 -0.02 2.94 16 25 C 0.13 1.68 5.02 -4.04 -0.02 1.66 16 26 C 0.23 2.92 6.86 -81.82 -0.56 2.36 16 27 C -0.11 -1.32 9.38 36.01 0.34 -0.99 16 28 N -0.52 -6.29 10.26 -6.67 -0.07 -6.36 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.17 1.26 7.43 -52.49 -0.39 0.87 16 33 H 0.08 0.69 5.11 -51.92 -0.27 0.42 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.00 6.34 -51.93 -0.33 0.67 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.11 7.52 -51.93 -0.39 0.72 16 39 H 0.07 0.88 8.01 -51.92 -0.42 0.47 16 40 H 0.07 1.13 8.02 -51.93 -0.42 0.71 16 41 H 0.06 1.30 6.98 -51.93 -0.36 0.93 16 42 H 0.02 0.52 5.04 -51.93 -0.26 0.26 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.03 0.69 7.66 -51.93 -0.40 0.30 16 45 H 0.03 0.60 6.01 -51.93 -0.31 0.29 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.10 1.48 6.81 -51.93 -0.35 1.13 16 48 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 50 H 0.09 1.20 6.76 -51.93 -0.35 0.84 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -34.39 380.02 -9.05 -43.44 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.66 Total: -0.97 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.63 Total: 4.45 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.44 Total: -62.52 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.13 Total: 18.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.39 -9.05 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054216100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.137 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds