Wall clock time and date at job start Wed Apr 1 2020 03:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31879 * 118.95037 * 2 1 4 4 C 1.32144 * 120.96173 * 179.97438 * 3 2 1 5 5 C 1.39966 * 118.92150 * 0.02562 * 4 3 2 6 6 C 1.47833 * 120.93255 * 179.97438 * 5 4 3 7 7 O 1.21555 * 119.99736 * 130.68222 * 6 5 4 8 8 N 1.34777 * 120.00515 * 310.94985 * 6 5 4 9 9 C 1.46936 * 120.70210 * 354.93135 * 8 6 5 10 10 C 1.52718 * 109.17993 * 234.12214 * 9 8 6 11 11 C 1.53169 * 109.34995 * 305.01585 * 10 9 8 12 12 C 1.52226 * 109.65237 * 60.03670 * 11 10 9 13 13 C 1.54483 * 110.29113 * 178.01325 * 12 11 10 14 14 C 1.55038 * 101.52988 * 276.21139 * 13 12 11 15 15 N 1.47486 * 104.89914 * 323.64976 * 14 13 12 16 16 C 1.36945 * 125.65966 * 203.99255 * 15 14 13 17 17 H 1.07995 * 120.00042 * 157.62393 * 16 15 14 18 18 C 1.38813 * 119.99577 * 337.62030 * 16 15 14 19 19 N 1.31618 * 119.99579 * 159.67246 * 18 16 15 20 20 Si 1.86793 * 120.00424 * 339.67601 * 18 16 15 21 21 H 1.48505 * 109.47299 * 85.12279 * 20 18 16 22 22 H 1.48498 * 109.47099 * 205.12065 * 20 18 16 23 23 H 1.48494 * 109.47069 * 325.12315 * 20 18 16 24 24 C 1.47181 * 108.67958 * 24.01638 * 15 14 13 25 25 C 1.47075 * 120.70645 * 175.20665 * 8 6 5 26 26 C 1.39924 * 118.12591 * 0.27282 * 5 4 3 27 27 C 1.50700 * 120.53987 * 179.70685 * 26 5 4 28 28 N 1.31858 * 118.95099 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47220 * 89.99982 * 1 2 3 30 30 H 1.09005 * 109.47186 * 209.99704 * 1 2 3 31 31 H 1.09000 * 109.47118 * 329.99969 * 1 2 3 32 32 H 1.07997 * 120.53437 * 179.97438 * 4 3 2 33 33 H 1.09009 * 109.56355 * 354.00710 * 9 8 6 34 34 H 1.09001 * 109.56376 * 114.33482 * 9 8 6 35 35 H 1.09001 * 109.57397 * 184.98386 * 10 9 8 36 36 H 1.08997 * 109.35452 * 64.90963 * 10 9 8 37 37 H 1.08999 * 109.43617 * 299.97813 * 11 10 9 38 38 H 1.09002 * 109.40585 * 180.02562 * 11 10 9 39 39 H 1.09010 * 111.01157 * 34.26590 * 13 12 11 40 40 H 1.08996 * 111.01974 * 158.14408 * 13 12 11 41 41 H 1.08996 * 110.34929 * 204.79874 * 14 13 12 42 42 H 1.09001 * 110.44537 * 82.55206 * 14 13 12 43 43 H 0.96996 * 120.00271 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.91019 * 239.10291 * 24 15 14 45 45 H 1.08998 * 109.91318 * 117.83239 * 24 15 14 46 46 H 1.09000 * 109.58228 * 247.33675 * 25 8 6 47 47 H 1.08999 * 109.58011 * 7.73715 * 25 8 6 48 48 H 1.09002 * 109.47243 * 91.86921 * 27 26 5 49 49 H 1.09001 * 109.46883 * 211.87075 * 27 26 5 50 50 H 1.09000 * 109.47062 * 331.86981 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2004 0.0005 5 6 4.1855 -0.0002 0.0005 6 6 5.6638 -0.0002 0.0005 7 8 6.2716 -0.6864 0.7988 8 7 6.3378 0.7647 -0.8810 9 6 5.6231 1.5187 -1.9202 10 6 6.2043 1.1634 -3.2871 11 6 7.7159 1.4106 -3.2756 12 6 8.3683 0.5438 -2.2077 13 6 9.9000 0.7446 -2.2168 14 6 10.3338 -0.2315 -3.3406 15 7 9.4282 -1.3881 -3.2087 16 6 9.6908 -2.6610 -3.6403 17 1 9.1665 -3.4981 -3.2037 18 6 10.6309 -2.8751 -4.6389 19 7 11.1789 -4.0630 -4.7830 20 14 11.1184 -1.4773 -5.7780 21 1 12.1912 -0.6713 -5.1417 22 1 11.6139 -2.0350 -7.0620 23 1 9.9379 -0.6143 -6.0359 24 6 8.1951 -0.9472 -2.5369 25 6 7.8046 0.8578 -0.8271 26 6 3.4661 -1.2003 -0.0059 27 6 4.1856 -2.5244 -0.0129 28 7 2.1453 -1.1538 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.9817 2.1493 0.0001 33 1 4.5647 1.2591 -1.8967 34 1 5.7424 2.5875 -1.7428 35 1 5.7399 1.7837 -4.0537 36 1 6.0090 0.1126 -3.5006 37 1 7.9101 2.4610 -3.0589 38 1 8.1316 1.1577 -4.2510 39 1 10.1579 1.7727 -2.4711 40 1 10.3375 0.4587 -1.2603 41 1 11.3684 -0.5416 -3.1948 42 1 10.2127 0.2353 -4.3181 43 1 11.8355 -4.2128 -5.4810 44 1 8.0492 -1.5156 -1.6183 45 1 7.3414 -1.0840 -3.2006 46 1 8.0961 1.8665 -0.5343 47 1 8.1898 0.1396 -0.1033 48 1 4.3296 -2.8652 1.0124 49 1 3.5922 -3.2575 -0.5595 50 1 5.1554 -2.4084 -0.4967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054216100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:46 Heat of formation + Delta-G solvation = 18.962866 kcal Electronic energy + Delta-G solvation = -31622.745059 eV Core-core repulsion = 27649.750711 eV Total energy + Delta-G solvation = -3972.994348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.62070 -41.44445 -39.83834 -37.51875 -35.64599 -35.14341 -34.43460 -33.33103 -32.48172 -30.55846 -30.28703 -29.58351 -27.78142 -26.72917 -25.25461 -24.83888 -23.49955 -23.22457 -22.66762 -21.10254 -19.50565 -19.21858 -18.87278 -18.29246 -17.40212 -17.16990 -17.03933 -16.73334 -16.49597 -15.88886 -15.65108 -15.39662 -15.16187 -14.79184 -14.71550 -14.51251 -14.37222 -14.17315 -14.10479 -13.99191 -13.77135 -13.51811 -13.35366 -13.29914 -13.19010 -13.00691 -12.82207 -12.73092 -12.61307 -12.26712 -12.15602 -12.04466 -11.84199 -11.65857 -11.48550 -11.39065 -11.24194 -11.00221 -10.82966 -10.47461 -10.43846 -9.68083 -9.03008 -8.22337 -5.52198 -0.59904 -0.14672 1.27140 1.35167 1.43081 1.45634 1.83724 2.38013 2.50176 2.75815 2.90836 3.01388 3.21638 3.24698 3.33123 3.53300 3.75185 3.78039 3.79965 3.99457 4.05625 4.07808 4.21492 4.27988 4.36456 4.43586 4.46423 4.48986 4.52557 4.64343 4.69221 4.71068 4.77295 4.78745 4.81748 4.83441 4.88018 4.93266 5.00186 5.00638 5.11309 5.13070 5.22029 5.31886 5.41750 5.44451 5.47800 5.66741 5.74260 6.06171 6.23988 6.74262 6.88144 6.95223 7.49906 8.08262 8.98559 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.003123 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.052727 B = 8964.287746 C = 9492.468023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.327 3.673 3 N -0.529 5.529 4 C 0.201 3.799 5 C -0.255 4.255 6 C 0.571 3.429 7 O -0.565 6.565 8 N -0.596 5.596 9 C 0.105 3.895 10 C -0.136 4.136 11 C -0.099 4.099 12 C -0.075 4.075 13 C -0.107 4.107 14 C 0.103 3.897 15 N -0.627 5.627 16 C -0.240 4.240 17 H 0.043 0.957 18 C -0.038 4.038 19 N -0.960 5.960 20 Si 0.958 3.042 21 H -0.265 1.265 22 H -0.308 1.308 23 H -0.264 1.264 24 C 0.152 3.848 25 C 0.136 3.864 26 C 0.217 3.783 27 C -0.106 4.106 28 N -0.536 5.536 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.207 0.793 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.039 0.961 37 H 0.106 0.894 38 H 0.048 0.952 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.029 0.971 43 H 0.263 0.737 44 H 0.004 0.996 45 H 0.020 0.980 46 H 0.114 0.886 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.237 20.562 8.329 29.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.061 3.939 3 N -0.243 5.243 4 C 0.033 3.967 5 C -0.262 4.262 6 C 0.358 3.642 7 O -0.444 6.444 8 N -0.327 5.327 9 C -0.016 4.016 10 C -0.174 4.174 11 C -0.136 4.136 12 C -0.076 4.076 13 C -0.145 4.145 14 C -0.021 4.021 15 N -0.354 5.354 16 C -0.369 4.369 17 H 0.061 0.939 18 C -0.232 4.232 19 N -0.607 5.607 20 Si 0.785 3.215 21 H -0.191 1.191 22 H -0.236 1.236 23 H -0.189 1.189 24 C 0.027 3.973 25 C 0.014 3.986 26 C 0.071 3.929 27 C -0.163 4.163 28 N -0.252 5.252 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.223 0.777 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.058 0.942 37 H 0.125 0.875 38 H 0.067 0.933 39 H 0.133 0.867 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.022 0.978 45 H 0.038 0.962 46 H 0.132 0.868 47 H 0.087 0.913 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.831 20.024 8.651 29.480 hybrid contribution 1.681 -0.973 -0.828 2.111 sum -18.149 19.052 7.823 27.451 Atomic orbital electron populations 1.20784 0.82743 1.05445 1.05370 1.24245 1.00028 0.82932 0.86659 1.68450 1.09565 1.29812 1.16501 1.23931 0.89319 0.97844 0.85570 1.21479 0.95252 0.97264 1.12234 1.18004 0.86353 0.78882 0.80938 1.90806 1.70001 1.42389 1.41250 1.48124 1.07535 1.46214 1.30851 1.22054 0.95943 0.97803 0.85821 1.21901 0.96049 1.01686 0.97754 1.21395 0.94686 1.00374 0.97168 1.21358 0.96102 0.93723 0.96442 1.22710 0.93544 1.00049 0.98231 1.22129 0.93888 0.88507 0.97610 1.44922 1.15370 1.05469 1.69621 1.18508 1.20850 0.82806 1.14699 0.93896 1.25802 0.98808 0.98840 0.99750 1.69971 1.30439 1.24861 1.35432 0.85756 0.78575 0.79153 0.77984 1.19103 1.23644 1.18910 1.21411 0.88041 0.93928 0.93911 1.21553 0.78017 1.03680 0.95354 1.21936 0.89471 0.95626 0.85829 1.20797 0.99030 0.92012 1.04434 1.68270 1.08687 1.31132 1.17114 0.87756 0.88780 0.87866 0.77671 0.89964 0.86424 0.87733 0.94243 0.87528 0.93315 0.86744 0.90704 0.94675 0.95384 0.92765 0.97806 0.96215 0.86821 0.91257 0.88671 0.88774 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.31 71.24 0.73 -0.21 16 2 C 0.33 6.33 7.64 138.71 1.06 7.39 16 3 N -0.53 -9.79 10.32 -186.79 -1.93 -11.71 16 4 C 0.20 3.45 8.86 85.06 0.75 4.20 16 5 C -0.25 -5.89 4.83 -19.91 -0.10 -5.98 16 6 C 0.57 15.27 6.38 86.78 0.55 15.82 16 7 O -0.57 -19.80 15.25 -3.89 -0.06 -19.86 16 8 N -0.60 -12.88 2.86 -824.35 -2.36 -15.24 16 9 C 0.11 1.51 5.32 86.20 0.46 1.97 16 10 C -0.14 -2.52 5.89 30.56 0.18 -2.34 16 11 C -0.10 -2.10 4.59 30.40 0.14 -1.96 16 12 C -0.07 -2.06 0.53 -51.91 -0.03 -2.09 16 13 C -0.11 -3.03 5.99 31.80 0.19 -2.83 16 14 C 0.10 4.24 4.41 86.89 0.38 4.62 16 15 N -0.63 -31.20 3.17 -692.45 -2.19 -33.39 16 16 C -0.24 -14.59 10.57 84.03 0.89 -13.70 16 17 H 0.04 2.91 8.06 -2.91 -0.02 2.89 16 18 C -0.04 -2.30 5.45 84.86 0.46 -1.84 16 19 N -0.96 -62.77 13.97 21.65 0.30 -62.46 16 20 Si 0.96 47.65 24.29 68.60 1.67 49.31 16 21 H -0.27 -12.25 6.65 99.48 0.66 -11.59 16 22 H -0.31 -15.45 7.11 99.48 0.71 -14.75 16 23 H -0.26 -12.45 6.63 99.48 0.66 -11.79 16 24 C 0.15 6.20 6.14 86.47 0.53 6.73 16 25 C 0.14 3.14 5.02 86.07 0.43 3.58 16 26 C 0.22 5.53 6.86 42.92 0.29 5.83 16 27 C -0.11 -2.75 9.38 71.24 0.67 -2.08 16 28 N -0.54 -12.69 10.26 -175.03 -1.79 -14.49 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.21 2.00 7.43 -2.91 -0.02 1.98 16 33 H 0.08 1.15 5.11 -2.38 -0.01 1.14 16 34 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.04 1.02 6.34 -2.39 -0.02 1.00 16 37 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.05 1.31 7.52 -2.39 -0.02 1.29 16 39 H 0.11 2.27 8.01 -2.38 -0.02 2.25 16 40 H 0.07 2.12 8.02 -2.39 -0.02 2.10 16 41 H 0.03 1.58 6.98 -2.39 -0.02 1.57 16 42 H 0.03 1.16 5.04 -2.39 -0.01 1.15 16 43 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 44 H 0.00 0.18 7.66 -2.38 -0.02 0.16 16 45 H 0.02 0.85 6.01 -2.39 -0.01 0.83 16 46 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.07 2.06 6.81 -2.39 -0.02 2.05 16 48 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.06 1.95 6.76 -2.39 -0.02 1.93 16 Total: -1.00 -82.72 380.02 2.10 -80.62 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.86 Total: 10.13 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 7.61 Total: 17.10 kcal Atomic # 7 Polarization: -129.32 SS G_CDS: -7.97 Total: -137.29 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.06 Total: -19.86 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.67 Total: 49.31 kcal Total: -82.72 2.10 -80.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054216100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.578 kcal (2) G-P(sol) polarization free energy of solvation -82.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds