Wall clock time and date at job start Wed Apr 1 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31885 * 118.95724 * 2 1 4 4 C 1.32130 * 120.96599 * 180.02562 * 3 2 1 5 5 C 1.39968 * 118.92488 * 359.97438 * 4 3 2 6 6 C 1.47833 * 120.93510 * 180.02562 * 5 4 3 7 7 O 1.21555 * 119.99913 * 126.13428 * 6 5 4 8 8 N 1.34776 * 120.00474 * 306.12717 * 6 5 4 9 9 C 1.46942 * 120.71468 * 354.23374 * 8 6 5 10 10 C 1.53188 * 108.90136 * 234.30030 * 9 8 6 11 11 C 1.53180 * 109.27644 * 304.61543 * 10 9 8 12 12 C 1.52068 * 109.73316 * 59.92912 * 11 10 9 13 13 C 1.54583 * 110.68014 * 64.30771 * 12 11 10 14 14 C 1.54471 * 102.75789 * 152.61806 * 13 12 11 15 15 N 1.47082 * 107.42763 * 338.69757 * 14 13 12 16 16 C 1.36935 * 125.62761 * 178.91009 * 15 14 13 17 17 H 1.07998 * 119.99816 * 180.02562 * 16 15 14 18 18 C 1.38805 * 120.00087 * 0.02562 * 16 15 14 19 19 N 1.31622 * 120.00189 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00182 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47119 * 90.00006 * 20 18 16 22 22 H 1.48498 * 109.47217 * 210.00285 * 20 18 16 23 23 H 1.48500 * 109.46957 * 330.00277 * 20 18 16 24 24 C 1.47573 * 108.74034 * 358.92731 * 15 14 13 25 25 C 1.47100 * 120.72074 * 174.20127 * 8 6 5 26 26 C 1.39924 * 118.12255 * 0.28308 * 5 4 3 27 27 C 1.50699 * 120.53930 * 179.70553 * 26 5 4 28 28 N 1.31862 * 118.94806 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47050 * 89.99987 * 1 2 3 30 30 H 1.08997 * 109.47438 * 209.99948 * 1 2 3 31 31 H 1.09004 * 109.46948 * 330.00748 * 1 2 3 32 32 H 1.08002 * 120.53320 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.56845 * 114.47750 * 9 8 6 34 34 H 1.08997 * 109.57171 * 354.12561 * 9 8 6 35 35 H 1.08995 * 109.50616 * 184.67690 * 10 9 8 36 36 H 1.09008 * 109.53654 * 64.57433 * 10 9 8 37 37 H 1.08992 * 109.43101 * 299.84881 * 11 10 9 38 38 H 1.08999 * 109.38447 * 179.97438 * 11 10 9 39 39 H 1.09000 * 110.70495 * 34.34840 * 13 12 11 40 40 H 1.08995 * 110.86033 * 270.96267 * 13 12 11 41 41 H 1.09004 * 109.87732 * 219.19646 * 14 13 12 42 42 H 1.08996 * 109.87630 * 98.19611 * 14 13 12 43 43 H 0.96999 * 119.99919 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.37552 * 142.12605 * 24 15 14 45 45 H 1.09008 * 110.37659 * 264.46481 * 24 15 14 46 46 H 1.09001 * 109.56325 * 7.98570 * 25 8 6 47 47 H 1.08995 * 109.57066 * 247.62356 * 25 8 6 48 48 H 1.08992 * 109.47440 * 94.87589 * 27 26 5 49 49 H 1.09001 * 109.46933 * 214.88270 * 27 26 5 50 50 H 1.09003 * 109.46837 * 334.87621 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2003 -0.0005 5 6 4.1855 -0.0003 -0.0005 6 6 5.6638 -0.0003 -0.0005 7 8 6.2716 -0.6211 0.8497 8 7 6.3378 0.6878 -0.9432 9 6 5.6247 1.3390 -2.0507 10 6 6.2221 0.8578 -3.3767 11 6 7.7306 1.1239 -3.3779 12 6 8.3846 0.3770 -2.2259 13 6 8.2417 -1.1506 -2.4146 14 6 9.4706 -1.7039 -1.6598 15 7 10.4557 -0.6159 -1.5646 16 6 11.6754 -0.6960 -0.9472 17 1 12.3298 0.1630 -0.9311 18 6 12.0706 -1.8810 -0.3422 19 7 11.2732 -2.9281 -0.3622 20 14 13.7342 -1.9900 0.5006 21 1 13.5934 -1.5990 1.9263 22 1 14.2410 -3.3833 0.4172 23 1 14.6906 -1.0743 -0.1716 24 6 9.9125 0.5763 -2.2438 25 6 7.8031 0.8037 -0.8853 26 6 3.4660 -1.2004 -0.0061 27 6 4.1855 -2.5245 -0.0130 28 7 2.1452 -1.1539 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 3.9818 2.1492 -0.0001 33 1 5.7365 2.4203 -1.9711 34 1 4.5679 1.0756 -2.0095 35 1 5.7569 1.3966 -4.2022 36 1 6.0409 -0.2109 -3.4916 37 1 7.9103 2.1929 -3.2653 38 1 8.1575 0.7817 -4.3206 39 1 8.2869 -1.4143 -3.4713 40 1 7.3173 -1.5125 -1.9646 41 1 9.8969 -2.5427 -2.2102 42 1 9.1775 -2.0269 -0.6609 43 1 11.5496 -3.7563 0.0603 44 1 10.1838 1.4803 -1.6985 45 1 10.2767 0.6274 -3.2699 46 1 8.1896 0.1571 -0.0975 47 1 8.0797 1.8377 -0.6799 48 1 4.2828 -2.8906 1.0090 49 1 3.6179 -3.2433 -0.6040 50 1 5.1763 -2.3973 -0.4493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054216101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:51 Heat of formation + Delta-G solvation = 39.299432 kcal Electronic energy + Delta-G solvation = -31672.822594 eV Core-core repulsion = 27700.710106 eV Total energy + Delta-G solvation = -3972.112488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.64441 -40.18165 -38.29478 -35.97571 -34.72339 -33.88235 -32.94638 -31.94917 -30.07388 -29.47305 -28.84779 -28.55260 -25.68242 -25.63427 -23.96229 -23.72725 -22.58947 -21.93061 -20.30670 -19.81705 -18.31195 -18.16924 -17.27363 -16.73295 -16.29631 -16.06888 -15.52737 -15.17054 -14.83276 -14.45322 -14.16509 -14.02021 -13.84819 -13.59989 -13.50545 -13.31631 -13.18481 -12.96209 -12.71754 -12.68766 -12.50301 -12.34356 -12.21816 -11.98461 -11.74689 -11.65018 -11.24124 -11.05401 -10.86752 -10.82237 -10.73750 -10.60078 -10.14085 -10.06141 -9.93358 -9.82593 -9.66854 -9.56405 -9.55611 -9.44639 -8.55146 -8.53161 -6.77158 -5.64896 -2.98676 0.33854 0.75741 2.57661 2.92155 3.39528 3.43917 3.48415 3.50511 3.57601 3.74703 4.11921 4.28979 4.53563 4.66550 4.72406 4.83271 4.89599 4.98915 5.10847 5.13562 5.19189 5.26874 5.31736 5.33974 5.47912 5.49275 5.52476 5.57142 5.64635 5.66912 5.78269 5.85815 5.91474 5.96228 6.00919 6.10343 6.13589 6.23208 6.29519 6.43430 6.46426 6.57841 6.64466 6.68945 6.76456 6.88693 7.39401 7.62029 7.70987 7.76299 7.90917 8.13371 8.32060 9.27655 9.88223 10.54186 11.46327 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.003085 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.933930 B = 9074.372669 C = 9929.020877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.330 3.670 3 N -0.525 5.525 4 C 0.186 3.814 5 C -0.237 4.237 6 C 0.566 3.434 7 O -0.511 6.511 8 N -0.600 5.600 9 C 0.106 3.894 10 C -0.132 4.132 11 C -0.101 4.101 12 C -0.086 4.086 13 C -0.127 4.127 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.149 3.851 25 C 0.134 3.866 26 C 0.229 3.771 27 C -0.111 4.111 28 N -0.520 5.520 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.173 0.827 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.048 0.952 43 H 0.251 0.749 44 H 0.038 0.962 45 H 0.022 0.978 46 H 0.107 0.893 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.597 8.797 -4.834 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.063 3.937 3 N -0.240 5.240 4 C 0.019 3.981 5 C -0.244 4.244 6 C 0.352 3.648 7 O -0.386 6.386 8 N -0.333 5.333 9 C -0.017 4.017 10 C -0.170 4.170 11 C -0.139 4.139 12 C -0.088 4.088 13 C -0.166 4.166 14 C 0.054 3.946 15 N -0.330 5.330 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.208 1.208 24 C 0.022 3.978 25 C 0.013 3.987 26 C 0.082 3.918 27 C -0.168 4.168 28 N -0.235 5.235 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.190 0.810 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.039 0.961 46 H 0.126 0.874 47 H 0.083 0.917 48 H 0.114 0.886 49 H 0.103 0.897 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.127 8.276 -4.238 23.082 hybrid contribution 1.828 0.004 0.374 1.865 sum -19.299 8.280 -3.864 21.353 Atomic orbital electron populations 1.20612 0.85393 1.04380 1.04072 1.23454 0.98383 0.83352 0.88463 1.68294 1.09497 1.30069 1.16136 1.23414 0.89408 0.97560 0.87725 1.21655 0.96450 0.96484 1.09834 1.17788 0.85575 0.79399 0.82086 1.90891 1.68796 1.41424 1.37480 1.48106 1.08205 1.52083 1.24868 1.21797 0.95937 0.97314 0.86700 1.21915 0.96824 1.02213 0.96095 1.21324 0.94012 1.00005 0.98595 1.21454 0.96942 0.96684 0.93747 1.22820 1.00116 0.93687 0.99960 1.21159 0.85325 0.90087 0.98025 1.44505 1.16846 1.07541 1.64152 1.19012 0.91777 0.97198 1.27739 0.90550 1.24790 0.98450 0.96055 1.01036 1.69974 1.35794 1.02139 1.48676 0.86156 0.83466 0.76817 0.79521 1.21633 1.21755 1.20787 1.21413 0.89034 0.91569 0.95794 1.21512 0.76411 1.01616 0.99124 1.21886 0.88850 0.95397 0.85640 1.20901 0.99966 0.91190 1.04716 1.68206 1.09075 1.30111 1.16154 0.89335 0.89411 0.89424 0.81043 0.91027 0.90839 0.90990 0.91269 0.92000 0.91409 0.92738 0.92665 0.94310 0.93397 0.93823 0.94365 0.96059 0.87436 0.91746 0.88581 0.89657 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.31 36.01 0.37 -0.23 16 2 C 0.33 3.63 7.64 -157.06 -1.20 2.43 16 3 N -0.53 -5.92 10.32 -10.39 -0.11 -6.02 16 4 C 0.19 2.04 9.10 -16.78 -0.15 1.89 16 5 C -0.24 -3.06 4.63 -104.69 -0.48 -3.55 16 6 C 0.57 8.65 6.19 -12.33 -0.08 8.57 16 7 O -0.51 -10.01 15.53 5.32 0.08 -9.92 16 8 N -0.60 -8.18 2.60 -174.32 -0.45 -8.63 16 9 C 0.11 1.06 5.63 -3.70 -0.02 1.04 16 10 C -0.13 -1.35 5.92 -26.54 -0.16 -1.51 16 11 C -0.10 -1.23 4.65 -27.11 -0.13 -1.36 16 12 C -0.09 -1.40 0.56 -153.97 -0.09 -1.49 16 13 C -0.13 -2.37 4.92 -25.13 -0.12 -2.49 16 14 C 0.18 4.38 4.95 -2.95 -0.01 4.37 16 15 N -0.60 -15.24 3.39 -170.32 -0.58 -15.82 16 16 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -27.48 10.31 55.49 0.57 -26.91 16 20 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.15 2.94 6.15 -2.88 -0.02 2.92 16 25 C 0.13 2.19 5.08 -4.11 -0.02 2.17 16 26 C 0.23 2.98 6.86 -81.82 -0.56 2.42 16 27 C -0.11 -1.36 9.56 36.01 0.34 -1.02 16 28 N -0.52 -6.45 10.26 -6.67 -0.07 -6.52 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.17 1.46 7.82 -52.49 -0.41 1.05 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.69 5.36 -51.93 -0.28 0.41 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.80 7.42 -51.92 -0.39 0.41 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.05 0.96 7.99 -51.93 -0.41 0.54 16 40 H 0.05 1.01 7.70 -51.93 -0.40 0.61 16 41 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 42 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.04 0.73 8.01 -51.93 -0.42 0.32 16 45 H 0.02 0.42 8.00 -51.92 -0.42 0.01 16 46 H 0.11 2.25 6.61 -51.93 -0.34 1.91 16 47 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 48 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.09 1.21 6.71 -51.93 -0.35 0.86 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -33.48 389.15 -10.24 -43.72 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.95 Total: -0.52 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -2.58 Total: 7.32 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.63 Total: -63.91 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.48 -10.24 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054216101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.017 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds