Wall clock time and date at job start Wed Apr 1 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31885 * 118.95724 * 2 1 4 4 C 1.32130 * 120.96599 * 180.02562 * 3 2 1 5 5 C 1.39968 * 118.92488 * 359.97438 * 4 3 2 6 6 C 1.47833 * 120.93510 * 180.02562 * 5 4 3 7 7 O 1.21555 * 119.99913 * 126.13428 * 6 5 4 8 8 N 1.34776 * 120.00474 * 306.12717 * 6 5 4 9 9 C 1.46942 * 120.71468 * 354.23374 * 8 6 5 10 10 C 1.53188 * 108.90136 * 234.30030 * 9 8 6 11 11 C 1.53180 * 109.27644 * 304.61543 * 10 9 8 12 12 C 1.52068 * 109.73316 * 59.92912 * 11 10 9 13 13 C 1.54583 * 110.68014 * 64.30771 * 12 11 10 14 14 C 1.54471 * 102.75789 * 152.61806 * 13 12 11 15 15 N 1.47082 * 107.42763 * 338.69757 * 14 13 12 16 16 C 1.36935 * 125.62761 * 178.91009 * 15 14 13 17 17 H 1.07998 * 119.99816 * 180.02562 * 16 15 14 18 18 C 1.38805 * 120.00087 * 0.02562 * 16 15 14 19 19 N 1.31622 * 120.00189 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00182 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47119 * 90.00006 * 20 18 16 22 22 H 1.48498 * 109.47217 * 210.00285 * 20 18 16 23 23 H 1.48500 * 109.46957 * 330.00277 * 20 18 16 24 24 C 1.47573 * 108.74034 * 358.92731 * 15 14 13 25 25 C 1.47100 * 120.72074 * 174.20127 * 8 6 5 26 26 C 1.39924 * 118.12255 * 0.28308 * 5 4 3 27 27 C 1.50699 * 120.53930 * 179.70553 * 26 5 4 28 28 N 1.31862 * 118.94806 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47050 * 89.99987 * 1 2 3 30 30 H 1.08997 * 109.47438 * 209.99948 * 1 2 3 31 31 H 1.09004 * 109.46948 * 330.00748 * 1 2 3 32 32 H 1.08002 * 120.53320 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.56845 * 114.47750 * 9 8 6 34 34 H 1.08997 * 109.57171 * 354.12561 * 9 8 6 35 35 H 1.08995 * 109.50616 * 184.67690 * 10 9 8 36 36 H 1.09008 * 109.53654 * 64.57433 * 10 9 8 37 37 H 1.08992 * 109.43101 * 299.84881 * 11 10 9 38 38 H 1.08999 * 109.38447 * 179.97438 * 11 10 9 39 39 H 1.09000 * 110.70495 * 34.34840 * 13 12 11 40 40 H 1.08995 * 110.86033 * 270.96267 * 13 12 11 41 41 H 1.09004 * 109.87732 * 219.19646 * 14 13 12 42 42 H 1.08996 * 109.87630 * 98.19611 * 14 13 12 43 43 H 0.96999 * 119.99919 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.37552 * 142.12605 * 24 15 14 45 45 H 1.09008 * 110.37659 * 264.46481 * 24 15 14 46 46 H 1.09001 * 109.56325 * 7.98570 * 25 8 6 47 47 H 1.08995 * 109.57066 * 247.62356 * 25 8 6 48 48 H 1.08992 * 109.47440 * 94.87589 * 27 26 5 49 49 H 1.09001 * 109.46933 * 214.88270 * 27 26 5 50 50 H 1.09003 * 109.46837 * 334.87621 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2003 -0.0005 5 6 4.1855 -0.0003 -0.0005 6 6 5.6638 -0.0003 -0.0005 7 8 6.2716 -0.6211 0.8497 8 7 6.3378 0.6878 -0.9432 9 6 5.6247 1.3390 -2.0507 10 6 6.2221 0.8578 -3.3767 11 6 7.7306 1.1239 -3.3779 12 6 8.3846 0.3770 -2.2259 13 6 8.2417 -1.1506 -2.4146 14 6 9.4706 -1.7039 -1.6598 15 7 10.4557 -0.6159 -1.5646 16 6 11.6754 -0.6960 -0.9472 17 1 12.3298 0.1630 -0.9311 18 6 12.0706 -1.8810 -0.3422 19 7 11.2732 -2.9281 -0.3622 20 14 13.7342 -1.9900 0.5006 21 1 13.5934 -1.5990 1.9263 22 1 14.2410 -3.3833 0.4172 23 1 14.6906 -1.0743 -0.1716 24 6 9.9125 0.5763 -2.2438 25 6 7.8031 0.8037 -0.8853 26 6 3.4660 -1.2004 -0.0061 27 6 4.1855 -2.5245 -0.0130 28 7 2.1452 -1.1539 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 3.9818 2.1492 -0.0001 33 1 5.7365 2.4203 -1.9711 34 1 4.5679 1.0756 -2.0095 35 1 5.7569 1.3966 -4.2022 36 1 6.0409 -0.2109 -3.4916 37 1 7.9103 2.1929 -3.2653 38 1 8.1575 0.7817 -4.3206 39 1 8.2869 -1.4143 -3.4713 40 1 7.3173 -1.5125 -1.9646 41 1 9.8969 -2.5427 -2.2102 42 1 9.1775 -2.0269 -0.6609 43 1 11.5496 -3.7563 0.0603 44 1 10.1838 1.4803 -1.6985 45 1 10.2767 0.6274 -3.2699 46 1 8.1896 0.1571 -0.0975 47 1 8.0797 1.8377 -0.6799 48 1 4.2828 -2.8906 1.0090 49 1 3.6179 -3.2433 -0.6040 50 1 5.1763 -2.3973 -0.4493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054216101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:50 Heat of formation + Delta-G solvation = 18.003878 kcal Electronic energy + Delta-G solvation = -31673.746038 eV Core-core repulsion = 27700.710106 eV Total energy + Delta-G solvation = -3973.035933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.60162 -41.36739 -39.67243 -37.40418 -35.64947 -35.08260 -34.33488 -33.27057 -31.65940 -30.47878 -30.26210 -29.71921 -27.36542 -26.69213 -25.44423 -24.84195 -23.52696 -23.04580 -22.07486 -21.09668 -19.64413 -19.15054 -18.61075 -18.32674 -17.33282 -17.05010 -16.81813 -16.53223 -16.37564 -15.84143 -15.60432 -15.21445 -15.06960 -14.81698 -14.45067 -14.39450 -14.15411 -14.06085 -13.98930 -13.83436 -13.55927 -13.44252 -13.32107 -13.29210 -13.17763 -12.95440 -12.78702 -12.72043 -12.36521 -12.13635 -12.01989 -11.92184 -11.80884 -11.67604 -11.57991 -11.31961 -11.08896 -11.00432 -10.70250 -10.47307 -10.42875 -9.68729 -8.87662 -7.83428 -5.18852 -0.57709 -0.15378 1.42848 1.43359 1.45821 1.53960 1.82517 2.48974 2.49301 2.76335 2.91078 3.22527 3.29284 3.35094 3.59388 3.69967 3.78618 3.84350 3.89784 4.07195 4.08683 4.19504 4.28258 4.31485 4.46622 4.51329 4.54004 4.55045 4.62632 4.72658 4.72979 4.78808 4.82289 4.88517 4.89687 4.90393 4.97742 5.03012 5.07376 5.11456 5.21300 5.33002 5.42924 5.45936 5.46725 5.51716 5.66551 5.74148 5.78343 6.20246 6.28620 6.88250 6.98673 7.10418 7.79703 8.44344 9.26837 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.003085 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.933930 B = 9074.372669 C = 9929.020877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.326 3.674 3 N -0.527 5.527 4 C 0.200 3.800 5 C -0.250 4.250 6 C 0.567 3.433 7 O -0.569 6.569 8 N -0.593 5.593 9 C 0.101 3.899 10 C -0.127 4.127 11 C -0.095 4.095 12 C -0.070 4.070 13 C -0.110 4.110 14 C 0.193 3.807 15 N -0.625 5.625 16 C -0.237 4.237 17 H 0.086 0.914 18 C -0.072 4.072 19 N -0.953 5.953 20 Si 0.977 3.023 21 H -0.290 1.290 22 H -0.297 1.297 23 H -0.264 1.264 24 C 0.142 3.858 25 C 0.141 3.859 26 C 0.219 3.781 27 C -0.106 4.106 28 N -0.532 5.532 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.200 0.800 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.053 0.947 41 H -0.002 1.002 42 H -0.004 1.004 43 H 0.243 0.757 44 H 0.048 0.952 45 H 0.034 0.966 46 H 0.050 0.950 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.102 0.898 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.770 12.267 -6.779 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.061 3.939 3 N -0.242 5.242 4 C 0.032 3.968 5 C -0.258 4.258 6 C 0.354 3.646 7 O -0.448 6.448 8 N -0.324 5.324 9 C -0.020 4.020 10 C -0.165 4.165 11 C -0.133 4.133 12 C -0.072 4.072 13 C -0.148 4.148 14 C 0.067 3.933 15 N -0.351 5.351 16 C -0.366 4.366 17 H 0.104 0.896 18 C -0.264 4.264 19 N -0.602 5.602 20 Si 0.805 3.195 21 H -0.217 1.217 22 H -0.223 1.223 23 H -0.188 1.188 24 C 0.017 3.983 25 C 0.018 3.982 26 C 0.073 3.927 27 C -0.163 4.163 28 N -0.247 5.247 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.217 0.783 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.105 0.895 48 H 0.108 0.892 49 H 0.121 0.879 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.332 11.810 -6.243 26.886 hybrid contribution 2.449 -1.039 0.973 2.833 sum -20.883 10.772 -5.270 24.081 Atomic orbital electron populations 1.20784 0.82585 1.05385 1.05507 1.24272 1.00056 0.82879 0.86728 1.68447 1.09321 1.29963 1.16444 1.23812 0.89382 0.97680 0.85890 1.21434 0.94745 0.97479 1.12096 1.18149 0.86546 0.78459 0.81463 1.90868 1.70139 1.43933 1.39910 1.48136 1.07142 1.51624 1.25509 1.22153 0.96016 0.98855 0.84993 1.21922 0.95417 1.01892 0.97313 1.21314 0.94958 1.00773 0.96234 1.21381 0.94996 0.95016 0.95817 1.22604 0.96805 0.95738 0.99663 1.20784 0.87469 0.89581 0.95442 1.44800 1.16392 1.09610 1.64306 1.19477 0.92881 0.97281 1.26966 0.89579 1.25687 1.02205 0.96012 1.02537 1.70238 1.37597 1.02414 1.49991 0.85099 0.79561 0.76599 0.78227 1.21692 1.22332 1.18805 1.21689 0.91264 0.89707 0.95653 1.21227 0.78194 1.01387 0.97350 1.21921 0.89469 0.95438 0.85916 1.20807 0.99052 0.92031 1.04430 1.68277 1.08465 1.31004 1.17000 0.87459 0.88743 0.88059 0.78300 0.87623 0.89732 0.87181 0.92887 0.89283 0.90834 0.91086 0.92846 0.98426 0.98542 0.94789 0.93367 0.94776 0.93095 0.89538 0.89241 0.87921 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.31 71.24 0.73 -0.20 16 2 C 0.33 6.41 7.64 138.70 1.06 7.47 16 3 N -0.53 -10.35 10.32 -186.79 -1.93 -12.28 16 4 C 0.20 3.87 9.10 85.07 0.77 4.65 16 5 C -0.25 -6.30 4.63 -19.91 -0.09 -6.39 16 6 C 0.57 17.69 6.19 86.78 0.54 18.23 16 7 O -0.57 -24.08 15.53 -3.89 -0.06 -24.14 16 8 N -0.59 -15.53 2.60 -823.70 -2.14 -17.67 16 9 C 0.10 1.62 5.63 86.36 0.49 2.11 16 10 C -0.13 -2.04 5.92 30.72 0.18 -1.86 16 11 C -0.10 -1.92 4.65 30.35 0.14 -1.78 16 12 C -0.07 -2.20 0.56 -51.83 -0.03 -2.23 16 13 C -0.11 -4.19 4.92 31.63 0.16 -4.03 16 14 C 0.19 10.14 4.95 86.77 0.43 10.57 16 15 N -0.62 -32.72 3.39 -692.76 -2.35 -35.07 16 16 C -0.24 -13.62 10.28 84.03 0.86 -12.76 16 17 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 18 C -0.07 -4.28 5.49 84.86 0.47 -3.81 16 19 N -0.95 -60.87 10.31 21.65 0.22 -60.65 16 20 Si 0.98 47.77 29.55 68.60 2.03 49.80 16 21 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 24 C 0.14 5.50 6.15 86.55 0.53 6.04 16 25 C 0.14 4.55 5.08 86.01 0.44 4.99 16 26 C 0.22 5.69 6.86 42.92 0.29 5.99 16 27 C -0.11 -2.78 9.56 71.24 0.68 -2.10 16 28 N -0.53 -12.56 10.26 -175.03 -1.80 -14.35 16 29 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.20 2.63 7.82 -2.91 -0.02 2.60 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.25 5.36 -2.39 -0.01 1.23 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.05 7.42 -2.38 -0.02 1.03 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 39 H 0.07 2.47 7.99 -2.39 -0.02 2.45 16 40 H 0.05 2.05 7.70 -2.39 -0.02 2.03 16 41 H 0.00 -0.15 7.50 -2.38 -0.02 -0.17 16 42 H 0.00 -0.23 7.38 -2.39 -0.02 -0.25 16 43 H 0.24 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.05 1.78 8.01 -2.39 -0.02 1.76 16 45 H 0.03 1.27 8.00 -2.38 -0.02 1.25 16 46 H 0.05 2.27 6.61 -2.39 -0.02 2.25 16 47 H 0.09 2.41 8.12 -2.39 -0.02 2.39 16 48 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.06 1.96 6.71 -2.39 -0.02 1.94 16 Total: -1.00 -80.88 389.15 2.57 -78.31 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.94 Total: 11.17 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 7.65 Total: 24.88 kcal Atomic # 7 Polarization: -132.03 SS G_CDS: -7.98 Total: -140.02 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.06 Total: -24.14 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -80.88 2.57 -78.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054216101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.310 kcal (2) G-P(sol) polarization free energy of solvation -80.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds