Wall clock time and date at job start Wed Apr 1 2020 03:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34851 * 125.96500 * 2 1 4 4 N 1.36312 * 106.69092 * 179.97438 * 3 2 1 5 5 C 1.35425 * 107.39725 * 0.06262 * 4 3 2 6 6 N 1.30087 * 108.62872 * 359.91115 * 5 4 3 7 7 C 1.51044 * 123.97724 * 179.89293 * 5 4 3 8 8 C 1.53394 * 108.21422 * 344.05922 * 7 5 4 9 9 H 1.09004 * 109.50395 * 288.83914 * 8 7 5 10 10 C 1.50700 * 109.51000 * 168.74966 * 8 7 5 11 11 O 1.21279 * 120.00113 * 239.99905 * 10 8 7 12 12 N 1.34784 * 119.99961 * 59.99673 * 10 8 7 13 13 C 1.47385 * 135.85294 * 359.63664 * 12 10 8 14 14 C 1.52073 * 87.41216 * 154.38601 * 13 12 10 15 15 C 1.47386 * 135.85005 * 180.02562 * 12 10 8 16 16 C 1.53518 * 117.20952 * 267.27950 * 14 13 12 17 17 C 1.54632 * 102.69811 * 262.92657 * 16 14 13 18 18 N 1.47139 * 107.38186 * 339.38711 * 17 16 14 19 19 C 1.36935 * 125.58420 * 179.12176 * 18 17 16 20 20 H 1.08001 * 120.00145 * 179.97438 * 19 18 17 21 21 C 1.38814 * 119.99656 * 359.97438 * 19 18 17 22 22 N 1.31617 * 120.00342 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99866 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47297 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47028 * 120.00011 * 23 21 19 26 26 H 1.48506 * 109.47239 * 240.00170 * 23 21 19 27 27 C 1.47763 * 108.83850 * 359.08776 * 18 17 16 28 28 C 1.53139 * 109.24311 * 48.81592 * 8 7 5 29 29 C 1.46478 * 127.77936 * 180.10495 * 4 3 2 30 30 H 1.09005 * 109.47687 * 270.00747 * 1 2 3 31 31 H 1.09010 * 109.47110 * 30.00260 * 1 2 3 32 32 H 1.08999 * 109.47221 * 150.00200 * 1 2 3 33 33 H 1.07998 * 126.65861 * 359.97438 * 3 2 1 34 34 H 1.09009 * 109.71008 * 224.37464 * 7 5 4 35 35 H 1.08994 * 109.74956 * 103.76293 * 7 5 4 36 36 H 1.08999 * 113.54282 * 268.99273 * 13 12 10 37 37 H 1.08995 * 113.54696 * 39.67208 * 13 12 10 38 38 H 1.08997 * 113.54585 * 320.32386 * 15 12 10 39 39 H 1.08996 * 113.54558 * 90.93731 * 15 12 10 40 40 H 1.08993 * 110.76679 * 21.23000 * 16 14 13 41 41 H 1.09000 * 110.76416 * 144.43960 * 16 14 13 42 42 H 1.09002 * 109.86291 * 98.83769 * 17 16 14 43 43 H 1.08999 * 109.86207 * 219.80016 * 17 16 14 44 44 H 0.96996 * 120.00699 * 180.02562 * 22 21 19 45 45 H 1.09004 * 110.40460 * 263.50255 * 27 18 17 46 46 H 1.09002 * 110.40302 * 141.08316 * 27 18 17 47 47 H 1.09003 * 109.46877 * 50.52773 * 28 8 7 48 48 H 1.09003 * 109.46958 * 170.50965 * 28 8 7 49 49 H 1.08994 * 109.58533 * 282.63412 * 29 4 3 50 50 H 1.09002 * 109.58100 * 43.04217 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0914 0.0000 4 7 3.5856 0.6415 0.0006 5 6 3.5413 -0.7120 -0.0005 6 7 2.2956 -1.0870 0.0002 7 6 4.7655 -1.5967 -0.0026 8 6 5.9743 -0.7417 -0.4035 9 1 5.9065 -0.4890 -1.4617 10 6 7.2433 -1.5142 -0.1508 11 8 8.0754 -1.0793 0.6169 12 7 7.4535 -2.6886 -0.7779 13 6 6.7098 -3.5220 -1.7396 14 6 8.0513 -4.0816 -2.1868 15 6 8.5240 -3.7016 -0.7951 16 6 8.7412 -3.3893 -3.3707 17 6 8.3344 -4.2787 -4.5685 18 7 7.9371 -5.5885 -4.0285 19 6 7.4931 -6.6531 -4.7664 20 1 7.2249 -7.5766 -4.2747 21 6 7.3876 -6.5454 -6.1463 22 7 7.7149 -5.4202 -6.7455 23 14 6.7825 -7.9979 -7.1530 24 1 6.4825 -9.1367 -6.2482 25 1 5.5509 -7.6123 -7.8876 26 1 7.8325 -8.3994 -8.1234 27 6 8.0967 -5.5673 -2.5597 28 6 5.9828 0.5427 0.4305 29 6 4.8149 1.4381 0.0029 30 1 -0.3635 0.0001 1.0277 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.9764 2.1221 -0.0004 34 1 4.6330 -2.4060 -0.7208 35 1 4.9222 -2.0111 0.9932 36 1 6.0651 -4.2626 -1.2665 37 1 6.1979 -2.9458 -2.5103 38 1 9.5270 -3.2754 -0.7771 39 1 8.3875 -4.4918 -0.0570 40 1 8.3649 -2.3743 -3.4977 41 1 9.8232 -3.3850 -3.2388 42 1 7.4956 -3.8264 -5.0976 43 1 9.1797 -4.3962 -5.2465 44 1 7.6409 -5.3447 -7.7097 45 1 9.0552 -6.0015 -2.2752 46 1 7.2781 -6.1046 -2.0807 47 1 5.8800 0.2912 1.4861 48 1 6.9227 1.0719 0.2731 49 1 5.0003 1.8268 -0.9983 50 1 4.7125 2.2656 0.7050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072855950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:04 Heat of formation + Delta-G solvation = 69.032744 kcal Electronic energy + Delta-G solvation = -30546.708933 eV Core-core repulsion = 26575.885778 eV Total energy + Delta-G solvation = -3970.823155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.35246 -41.97002 -39.98430 -37.47649 -37.16198 -34.51095 -34.00186 -32.46897 -31.34039 -30.48848 -29.72387 -28.28783 -27.29831 -27.11480 -25.61852 -24.92280 -23.54378 -22.12441 -21.45102 -20.47905 -20.06898 -19.65692 -18.59040 -18.04425 -17.80563 -17.23860 -16.81590 -16.75201 -16.55708 -15.92161 -15.60728 -15.58006 -15.20179 -15.06703 -14.67150 -14.55658 -14.26862 -14.13452 -13.86699 -13.73444 -13.69172 -13.45432 -13.28556 -13.13742 -12.89027 -12.82687 -12.76060 -12.62545 -12.31206 -12.25324 -12.17241 -11.96857 -11.88891 -11.79964 -11.65876 -11.20181 -10.95031 -10.81439 -10.66858 -10.48619 -9.74962 -9.13994 -8.83732 -7.80750 -5.14887 1.06562 1.46502 1.49279 1.49810 1.59633 1.72750 1.85780 2.06747 2.52879 3.00234 3.26074 3.34618 3.44766 3.45360 3.53756 3.60032 3.82851 3.87209 4.00328 4.06687 4.09663 4.21229 4.23692 4.32524 4.37515 4.46569 4.49808 4.56276 4.57252 4.65224 4.68473 4.72984 4.73892 4.84026 4.87428 4.90864 4.95552 5.02293 5.03882 5.06643 5.16544 5.19166 5.22337 5.36950 5.52085 5.69735 5.82084 5.87973 6.22196 6.23884 6.66452 7.01753 7.15028 7.15159 7.82671 8.46352 9.29757 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011673 B = 0.002753 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.113980 B =10169.976485 C =11798.544506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.039 4.039 3 C -0.044 4.044 4 N -0.455 5.455 5 C 0.194 3.806 6 N -0.525 5.525 7 C -0.016 4.016 8 C -0.098 4.098 9 H 0.111 0.889 10 C 0.551 3.449 11 O -0.575 6.575 12 N -0.638 5.638 13 C 0.124 3.876 14 C -0.100 4.100 15 C 0.126 3.874 16 C -0.101 4.101 17 C 0.189 3.811 18 N -0.625 5.625 19 C -0.232 4.232 20 H 0.086 0.914 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.973 3.027 24 H -0.264 1.264 25 H -0.295 1.295 26 H -0.296 1.296 27 C 0.150 3.850 28 C -0.109 4.109 29 C 0.104 3.896 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.209 0.791 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.011 0.989 43 H 0.003 0.997 44 H 0.244 0.756 45 H 0.035 0.965 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.106 0.894 49 H 0.104 0.896 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 15.988 16.317 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.168 4.168 3 C -0.177 4.177 4 N -0.138 5.138 5 C -0.069 4.069 6 N -0.246 5.246 7 C -0.055 4.055 8 C -0.119 4.119 9 H 0.129 0.871 10 C 0.341 3.659 11 O -0.455 6.455 12 N -0.372 5.372 13 C 0.002 3.998 14 C -0.102 4.102 15 C 0.004 3.996 16 C -0.139 4.139 17 C 0.064 3.936 18 N -0.352 5.352 19 C -0.361 4.361 20 H 0.104 0.896 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.802 3.198 24 H -0.188 1.188 25 H -0.223 1.223 26 H -0.224 1.224 27 C 0.025 3.975 28 C -0.147 4.147 29 C -0.016 4.016 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.226 0.774 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.030 0.970 43 H 0.022 0.978 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.092 0.908 48 H 0.125 0.875 49 H 0.122 0.878 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.117 15.675 16.643 23.945 hybrid contribution 0.095 -0.169 -1.186 1.202 sum -7.022 15.505 15.457 22.992 Atomic orbital electron populations 1.20047 0.86231 1.03077 1.02577 1.21385 0.97857 0.88498 1.09035 1.22847 0.82296 1.01456 1.11126 1.45595 1.07667 1.06962 1.53552 1.23151 0.94451 0.82721 1.06555 1.69891 1.00886 1.32307 1.21496 1.20031 0.85934 0.95497 1.04046 1.21313 0.91133 0.96011 1.03473 0.87121 1.20131 0.87819 0.79645 0.78267 1.90687 1.47939 1.69168 1.37700 1.49806 1.23745 1.18810 1.44793 1.22952 0.95078 0.92048 0.89764 1.22008 0.97066 0.96595 0.94485 1.22793 0.92685 0.89219 0.94897 1.22250 0.99918 0.98146 0.93598 1.20910 0.96100 0.84453 0.92110 1.44829 1.77124 1.11149 1.02077 1.19487 1.35183 0.92218 0.89222 0.89649 1.25581 1.02892 0.99792 0.97796 1.70180 1.55639 1.26187 1.08167 0.85082 0.76855 0.79208 0.78652 1.18832 1.22265 1.22378 1.21325 0.99132 0.93085 0.83983 1.21685 0.99150 0.93882 1.00006 1.22275 0.79973 0.94118 1.05268 0.90945 0.89167 0.92513 0.77390 0.88453 0.89145 0.87571 0.90398 0.90168 0.87412 0.91005 0.90804 0.97034 0.97845 0.94659 0.94770 0.92563 0.90764 0.87518 0.87766 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 10.42 71.23 0.74 -0.28 16 2 C -0.04 -0.90 7.10 41.40 0.29 -0.60 16 3 C -0.04 -0.76 11.55 83.22 0.96 0.20 16 4 N -0.46 -8.33 3.13 -513.83 -1.61 -9.94 16 5 C 0.19 4.65 7.65 138.23 1.06 5.71 16 6 N -0.53 -14.97 11.24 -175.69 -1.98 -16.95 16 7 C -0.02 -0.33 5.36 30.09 0.16 -0.17 16 8 C -0.10 -1.85 2.42 -11.36 -0.03 -1.88 16 9 H 0.11 2.00 8.12 -2.38 -0.02 1.98 16 10 C 0.55 13.59 7.38 87.66 0.65 14.23 16 11 O -0.57 -17.62 16.60 -3.03 -0.05 -17.68 16 12 N -0.64 -15.43 3.65 -859.89 -3.14 -18.57 16 13 C 0.12 3.09 6.28 83.76 0.53 3.62 16 14 C -0.10 -2.88 1.06 -52.61 -0.06 -2.93 16 15 C 0.13 2.99 8.03 83.68 0.67 3.66 16 16 C -0.10 -3.41 6.41 31.32 0.20 -3.21 16 17 C 0.19 8.89 5.39 86.81 0.47 9.35 16 18 N -0.63 -30.00 3.41 -693.45 -2.36 -32.36 16 19 C -0.23 -12.42 10.28 84.03 0.86 -11.56 16 20 H 0.09 4.35 7.83 -2.91 -0.02 4.32 16 21 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16 22 N -0.95 -56.34 10.30 21.65 0.22 -56.11 16 23 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 27 C 0.15 5.31 6.70 86.22 0.58 5.89 16 28 C -0.11 -1.64 4.67 30.72 0.14 -1.49 16 29 C 0.10 1.16 6.98 86.47 0.60 1.77 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.21 1.89 8.06 -2.91 -0.02 1.86 16 34 H 0.10 2.11 6.80 -2.38 -0.02 2.09 16 35 H 0.09 1.89 8.11 -2.39 -0.02 1.87 16 36 H 0.11 2.37 8.06 -2.39 -0.02 2.35 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 39 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 41 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.01 0.61 7.39 -2.39 -0.02 0.59 16 43 H 0.00 0.18 7.49 -2.39 -0.02 0.16 16 44 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 45 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.06 1.86 8.00 -2.39 -0.02 1.84 16 47 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 48 H 0.11 1.53 7.79 -2.39 -0.02 1.52 16 49 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -75.17 395.92 2.34 -72.83 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.92 Total: 12.67 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 8.30 Total: 18.99 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -8.86 Total: -133.94 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.68 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -75.17 2.34 -72.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072855950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.868 kcal (2) G-P(sol) polarization free energy of solvation -75.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds