Wall clock time and date at job start Wed Apr 1 2020 03:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32163 * 120.53618 * 2 1 4 4 C 1.31853 * 120.96881 * 180.02562 * 3 2 1 5 5 C 1.50696 * 118.95495 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47327 * 119.99527 * 5 4 3 7 7 C 1.52995 * 109.46975 * 239.99555 * 5 4 3 8 8 N 1.31890 * 122.09249 * 359.97438 * 4 3 2 9 9 C 1.32134 * 120.96483 * 359.73521 * 8 4 3 10 10 C 1.39924 * 120.53553 * 180.02562 * 2 1 3 11 11 C 1.47833 * 120.94274 * 359.95390 * 10 2 1 12 12 O 1.21550 * 119.99844 * 324.11087 * 11 10 2 13 13 N 1.34772 * 119.99771 * 144.38394 * 11 10 2 14 14 C 1.47402 * 125.59102 * 3.92989 * 13 11 10 15 15 C 1.54868 * 104.81817 * 204.39870 * 14 13 11 16 16 C 1.55173 * 101.73409 * 322.76999 * 15 14 13 17 17 H 1.09003 * 113.25499 * 158.11403 * 16 15 14 18 18 C 1.53746 * 108.31609 * 285.38522 * 16 15 14 19 19 N 1.46378 * 108.45913 * 123.93668 * 18 16 15 20 20 C 1.36929 * 125.49819 * 181.46523 * 19 18 16 21 21 H 1.08000 * 120.00184 * 0.31725 * 20 19 18 22 22 C 1.38817 * 120.00066 * 180.31567 * 20 19 18 23 23 N 1.31620 * 120.00144 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99868 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47102 * 90.00395 * 24 22 20 26 26 H 1.48507 * 109.47099 * 210.00060 * 24 22 20 27 27 H 1.48491 * 109.47445 * 330.00219 * 24 22 20 28 28 C 1.46721 * 109.18771 * 1.71589 * 19 18 16 29 29 C 1.46719 * 125.58404 * 183.62107 * 13 11 10 30 30 H 1.08993 * 111.52756 * 56.10363 * 29 13 11 31 31 H 1.08995 * 109.47228 * 274.60816 * 1 2 3 32 32 H 1.09008 * 109.47120 * 34.61094 * 1 2 3 33 33 H 1.09005 * 109.47414 * 154.60934 * 1 2 3 34 34 H 1.09003 * 109.46815 * 359.97438 * 5 4 3 35 35 H 1.09000 * 109.46906 * 300.00172 * 6 5 4 36 36 H 1.08996 * 109.47117 * 59.99959 * 6 5 4 37 37 H 1.08998 * 109.47340 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.46875 * 60.00189 * 7 5 4 39 39 H 1.09007 * 109.47110 * 179.97438 * 7 5 4 40 40 H 1.08996 * 109.47142 * 299.99840 * 7 5 4 41 41 H 1.08001 * 120.53839 * 180.27923 * 9 8 4 42 42 H 1.08993 * 110.37338 * 323.23375 * 14 13 11 43 43 H 1.08995 * 110.37039 * 85.56723 * 14 13 11 44 44 H 1.09002 * 110.97726 * 80.88221 * 15 14 13 45 45 H 1.08999 * 110.97402 * 204.62350 * 15 14 13 46 46 H 1.08999 * 109.74573 * 244.05081 * 18 16 15 47 47 H 1.09004 * 109.74656 * 4.70234 * 18 16 15 48 48 H 0.96996 * 120.00075 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.98575 * 222.43930 * 28 19 18 50 50 H 1.08999 * 109.98299 * 101.13887 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 -0.0005 5 6 4.2166 2.4724 0.0001 6 6 5.0942 2.5753 1.2491 7 6 5.0934 2.5768 -1.2493 8 7 4.2061 0.0362 -0.0005 9 6 3.6164 -1.1461 0.0052 10 6 2.2179 -1.2052 -0.0005 11 6 1.5121 -2.5041 -0.0001 12 8 0.4730 -2.6309 0.6177 13 7 2.0235 -3.5492 -0.6802 14 6 3.3125 -3.5594 -1.3952 15 6 3.1585 -4.6599 -2.4738 16 6 2.3242 -5.7279 -1.7180 17 1 1.7875 -6.4045 -2.3831 18 6 3.2470 -6.4426 -0.7173 19 7 2.6633 -6.3214 0.6196 20 6 3.2141 -6.8083 1.7748 21 1 4.1603 -7.3281 1.7447 22 6 2.5564 -6.6336 2.9847 23 7 1.4030 -6.0006 3.0214 24 14 3.3075 -7.2984 4.5605 25 1 4.1795 -6.2617 5.1690 26 1 2.2251 -7.6558 5.5125 27 1 4.1149 -8.5061 4.2530 28 6 1.3893 -5.5998 0.5259 29 6 1.3915 -4.8653 -0.8249 30 1 0.3917 -4.7842 -1.2514 31 1 -0.3633 0.0826 1.0243 32 1 -0.3634 0.8459 -0.5838 33 1 -0.3634 -0.9284 -0.4407 34 1 3.4871 3.2823 0.0005 35 1 4.4695 2.5008 2.1392 36 1 5.8237 1.7654 1.2484 37 1 5.6151 3.5328 1.2493 38 1 4.4681 2.5035 -2.1391 39 1 5.6136 3.5348 -1.2491 40 1 5.8228 1.7669 -1.2500 41 1 4.2038 -2.0524 0.0097 42 1 3.4944 -2.5921 -1.8634 43 1 4.1237 -3.8093 -0.7114 44 1 2.6163 -4.2831 -3.3411 45 1 4.1300 -5.0582 -2.7664 46 1 3.3399 -7.4943 -0.9883 47 1 4.2306 -5.9729 -0.7231 48 1 0.9432 -5.8789 3.8668 49 1 1.3077 -4.8805 1.3409 50 1 0.5584 -6.3041 0.5656 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076329458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:15 Heat of formation + Delta-G solvation = 46.013591 kcal Electronic energy + Delta-G solvation = -31590.179668 eV Core-core repulsion = 27618.358327 eV Total energy + Delta-G solvation = -3971.821340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.46206 -40.04556 -37.90203 -35.81384 -34.98422 -34.20863 -32.42910 -31.66606 -30.89288 -29.22062 -28.26419 -27.36414 -26.52411 -25.13147 -24.80448 -23.39442 -22.62431 -21.15411 -20.45411 -19.71638 -18.92231 -18.03789 -17.09112 -16.66317 -16.29240 -16.16069 -15.31047 -14.95416 -14.63107 -14.46099 -14.25782 -14.07629 -13.79140 -13.42475 -13.37860 -13.23503 -13.03361 -12.76259 -12.55615 -12.32102 -12.29041 -12.22790 -11.96069 -11.87055 -11.61485 -11.41646 -11.25139 -11.14428 -11.12175 -11.04385 -10.75969 -10.61765 -10.51183 -10.34315 -10.16353 -9.84436 -9.70036 -9.50073 -9.34031 -9.28381 -8.61311 -8.19682 -6.81168 -5.64212 -3.05389 0.52992 0.99447 3.00073 3.20237 3.40277 3.44921 3.47708 3.64169 3.68988 3.96827 4.36743 4.46360 4.53594 4.70994 4.77342 4.82054 4.90109 4.91697 5.01936 5.09662 5.35109 5.42470 5.44290 5.47078 5.48438 5.53190 5.57982 5.63426 5.65449 5.67855 5.69808 5.72275 5.81052 5.82796 5.97898 5.99130 6.02612 6.15344 6.16361 6.27437 6.33769 6.45320 6.52268 6.62346 6.80606 6.88820 7.44930 7.65315 7.84733 7.95161 7.99068 8.39154 8.46918 9.23224 9.84931 10.47125 11.40459 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.003555 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.855387 B = 7874.499604 C = 8519.271987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.228 3.772 3 N -0.523 5.523 4 C 0.336 3.664 5 C -0.027 4.027 6 C -0.142 4.142 7 C -0.140 4.140 8 N -0.519 5.519 9 C 0.182 3.818 10 C -0.232 4.232 11 C 0.581 3.419 12 O -0.513 6.513 13 N -0.591 5.591 14 C 0.095 3.905 15 C -0.123 4.123 16 C -0.109 4.109 17 H 0.098 0.902 18 C 0.142 3.858 19 N -0.599 5.599 20 C -0.232 4.232 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.913 5.913 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.154 3.846 29 C 0.115 3.885 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.177 0.823 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.021 0.979 47 H 0.024 0.976 48 H 0.253 0.747 49 H 0.109 0.891 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 14.266 -12.600 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 N -0.238 5.238 4 C 0.069 3.931 5 C -0.047 4.047 6 C -0.200 4.200 7 C -0.198 4.198 8 N -0.233 5.233 9 C 0.016 3.984 10 C -0.240 4.240 11 C 0.367 3.633 12 O -0.389 6.389 13 N -0.324 5.324 14 C -0.028 4.028 15 C -0.161 4.161 16 C -0.129 4.129 17 H 0.116 0.884 18 C 0.016 3.984 19 N -0.325 5.325 20 C -0.360 4.360 21 H 0.095 0.905 22 C -0.202 4.202 23 N -0.560 5.560 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.207 1.207 28 C 0.028 3.972 29 C 0.012 3.988 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.194 0.806 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.039 0.961 47 H 0.042 0.958 48 H 0.064 0.936 49 H 0.126 0.874 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 4.350 15.107 -11.990 19.772 hybrid contribution 0.035 -1.371 0.923 1.653 sum 4.385 13.736 -11.067 18.177 Atomic orbital electron populations 1.20904 0.86834 1.04132 1.04480 1.21853 0.97854 0.86388 0.85769 1.68180 1.09522 1.29698 1.16393 1.23331 0.86522 0.94735 0.88488 1.19992 0.96956 0.90339 0.97442 1.21801 0.99622 1.02686 0.95862 1.21789 0.99570 1.02691 0.95754 1.68213 1.41120 0.98284 1.15682 1.23801 0.91153 0.96497 0.86994 1.21661 0.96428 0.96282 1.09619 1.17227 0.84744 0.81942 0.79354 1.90826 1.23600 1.83206 1.41238 1.48136 1.20832 1.12101 1.51297 1.22533 0.87031 0.99001 0.94219 1.22801 1.00931 0.95531 0.96854 1.23080 0.96746 0.96441 0.96604 0.88383 1.21120 0.94548 0.96774 0.85960 1.44126 1.21633 1.65653 1.01116 1.18979 1.03150 1.30171 0.83707 0.90506 1.24821 0.96968 1.00717 0.97739 1.69899 1.15569 1.45812 1.24683 0.86143 0.77936 0.78387 0.83413 1.21662 1.21624 1.20707 1.21715 0.87493 0.95141 0.92825 1.22726 0.95259 0.81249 0.99595 0.90151 0.88814 0.90384 0.89006 0.88619 0.92700 0.91254 0.91577 0.92825 0.91604 0.91280 0.80593 0.91395 0.90558 0.91021 0.89784 0.96123 0.95837 0.93636 0.87368 0.95967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.31 36.01 0.34 -1.09 16 2 C 0.23 3.49 6.86 -81.82 -0.56 2.93 16 3 N -0.52 -7.69 10.22 -6.67 -0.07 -7.76 16 4 C 0.34 4.58 6.34 -157.06 -1.00 3.59 16 5 C -0.03 -0.28 3.25 -91.78 -0.30 -0.57 16 6 C -0.14 -1.32 9.09 37.16 0.34 -0.99 16 7 C -0.14 -1.19 9.09 37.15 0.34 -0.86 16 8 N -0.52 -7.41 9.77 -10.39 -0.10 -7.51 16 9 C 0.18 2.71 9.21 -16.77 -0.15 2.56 16 10 C -0.23 -3.79 5.53 -104.69 -0.58 -4.36 16 11 C 0.58 10.90 6.72 -12.34 -0.08 10.82 16 12 O -0.51 -11.26 14.33 5.32 0.08 -11.19 16 13 N -0.59 -10.31 3.01 -163.37 -0.49 -10.80 16 14 C 0.10 1.31 4.69 -2.56 -0.01 1.30 16 15 C -0.12 -1.48 6.31 -24.60 -0.16 -1.63 16 16 C -0.11 -1.70 4.27 -87.87 -0.38 -2.07 16 17 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 18 C 0.14 2.75 6.39 -3.72 -0.02 2.73 16 19 N -0.60 -14.95 3.37 -172.23 -0.58 -15.53 16 20 C -0.23 -6.41 10.25 -15.06 -0.15 -6.56 16 21 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 22 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 23 N -0.91 -27.39 10.17 55.49 0.56 -26.83 16 24 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.15 3.78 5.15 -3.53 -0.02 3.76 16 29 C 0.12 2.16 3.68 -66.20 -0.24 1.92 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 33 H 0.09 1.32 6.18 -51.93 -0.32 1.00 16 34 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.71 8.01 -51.93 -0.42 0.29 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 40 H 0.07 0.64 8.01 -51.93 -0.42 0.22 16 41 H 0.18 2.45 5.57 -52.49 -0.29 2.16 16 42 H 0.07 0.80 6.58 -51.93 -0.34 0.46 16 43 H 0.08 1.12 6.63 -51.93 -0.34 0.78 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.87 7.96 -51.93 -0.41 0.45 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.02 0.44 6.78 -51.93 -0.35 0.09 16 48 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 49 H 0.11 3.11 5.18 -51.93 -0.27 2.84 16 50 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 388.06 15.07 5.85 5.85 Total: -1.00 -33.24 388.06 -10.30 -43.54 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.78 Total: 1.67 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -2.74 Total: 11.20 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.68 Total: -68.43 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.24 -10.30 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076329458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.556 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds