Wall clock time and date at job start Wed Apr 1 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32163 * 120.53618 * 2 1 4 4 C 1.31853 * 120.96881 * 180.02562 * 3 2 1 5 5 C 1.50696 * 118.95495 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47327 * 119.99527 * 5 4 3 7 7 C 1.52995 * 109.46975 * 239.99555 * 5 4 3 8 8 N 1.31890 * 122.09249 * 359.97438 * 4 3 2 9 9 C 1.32134 * 120.96483 * 359.73521 * 8 4 3 10 10 C 1.39924 * 120.53553 * 180.02562 * 2 1 3 11 11 C 1.47833 * 120.94274 * 359.95390 * 10 2 1 12 12 O 1.21550 * 119.99844 * 324.11087 * 11 10 2 13 13 N 1.34772 * 119.99771 * 144.38394 * 11 10 2 14 14 C 1.47402 * 125.59102 * 3.92989 * 13 11 10 15 15 C 1.54868 * 104.81817 * 204.39870 * 14 13 11 16 16 C 1.55173 * 101.73409 * 322.76999 * 15 14 13 17 17 H 1.09003 * 113.25499 * 158.11403 * 16 15 14 18 18 C 1.53746 * 108.31609 * 285.38522 * 16 15 14 19 19 N 1.46378 * 108.45913 * 123.93668 * 18 16 15 20 20 C 1.36929 * 125.49819 * 181.46523 * 19 18 16 21 21 H 1.08000 * 120.00184 * 0.31725 * 20 19 18 22 22 C 1.38817 * 120.00066 * 180.31567 * 20 19 18 23 23 N 1.31620 * 120.00144 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99868 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47102 * 90.00395 * 24 22 20 26 26 H 1.48507 * 109.47099 * 210.00060 * 24 22 20 27 27 H 1.48491 * 109.47445 * 330.00219 * 24 22 20 28 28 C 1.46721 * 109.18771 * 1.71589 * 19 18 16 29 29 C 1.46719 * 125.58404 * 183.62107 * 13 11 10 30 30 H 1.08993 * 111.52756 * 56.10363 * 29 13 11 31 31 H 1.08995 * 109.47228 * 274.60816 * 1 2 3 32 32 H 1.09008 * 109.47120 * 34.61094 * 1 2 3 33 33 H 1.09005 * 109.47414 * 154.60934 * 1 2 3 34 34 H 1.09003 * 109.46815 * 359.97438 * 5 4 3 35 35 H 1.09000 * 109.46906 * 300.00172 * 6 5 4 36 36 H 1.08996 * 109.47117 * 59.99959 * 6 5 4 37 37 H 1.08998 * 109.47340 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.46875 * 60.00189 * 7 5 4 39 39 H 1.09007 * 109.47110 * 179.97438 * 7 5 4 40 40 H 1.08996 * 109.47142 * 299.99840 * 7 5 4 41 41 H 1.08001 * 120.53839 * 180.27923 * 9 8 4 42 42 H 1.08993 * 110.37338 * 323.23375 * 14 13 11 43 43 H 1.08995 * 110.37039 * 85.56723 * 14 13 11 44 44 H 1.09002 * 110.97726 * 80.88221 * 15 14 13 45 45 H 1.08999 * 110.97402 * 204.62350 * 15 14 13 46 46 H 1.08999 * 109.74573 * 244.05081 * 18 16 15 47 47 H 1.09004 * 109.74656 * 4.70234 * 18 16 15 48 48 H 0.96996 * 120.00075 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.98575 * 222.43930 * 28 19 18 50 50 H 1.08999 * 109.98299 * 101.13887 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 -0.0005 5 6 4.2166 2.4724 0.0001 6 6 5.0942 2.5753 1.2491 7 6 5.0934 2.5768 -1.2493 8 7 4.2061 0.0362 -0.0005 9 6 3.6164 -1.1461 0.0052 10 6 2.2179 -1.2052 -0.0005 11 6 1.5121 -2.5041 -0.0001 12 8 0.4730 -2.6309 0.6177 13 7 2.0235 -3.5492 -0.6802 14 6 3.3125 -3.5594 -1.3952 15 6 3.1585 -4.6599 -2.4738 16 6 2.3242 -5.7279 -1.7180 17 1 1.7875 -6.4045 -2.3831 18 6 3.2470 -6.4426 -0.7173 19 7 2.6633 -6.3214 0.6196 20 6 3.2141 -6.8083 1.7748 21 1 4.1603 -7.3281 1.7447 22 6 2.5564 -6.6336 2.9847 23 7 1.4030 -6.0006 3.0214 24 14 3.3075 -7.2984 4.5605 25 1 4.1795 -6.2617 5.1690 26 1 2.2251 -7.6558 5.5125 27 1 4.1149 -8.5061 4.2530 28 6 1.3893 -5.5998 0.5259 29 6 1.3915 -4.8653 -0.8249 30 1 0.3917 -4.7842 -1.2514 31 1 -0.3633 0.0826 1.0243 32 1 -0.3634 0.8459 -0.5838 33 1 -0.3634 -0.9284 -0.4407 34 1 3.4871 3.2823 0.0005 35 1 4.4695 2.5008 2.1392 36 1 5.8237 1.7654 1.2484 37 1 5.6151 3.5328 1.2493 38 1 4.4681 2.5035 -2.1391 39 1 5.6136 3.5348 -1.2491 40 1 5.8228 1.7669 -1.2500 41 1 4.2038 -2.0524 0.0097 42 1 3.4944 -2.5921 -1.8634 43 1 4.1237 -3.8093 -0.7114 44 1 2.6163 -4.2831 -3.3411 45 1 4.1300 -5.0582 -2.7664 46 1 3.3399 -7.4943 -0.9883 47 1 4.2306 -5.9729 -0.7231 48 1 0.9432 -5.8789 3.8668 49 1 1.3077 -4.8805 1.3409 50 1 0.5584 -6.3041 0.5656 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076329458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:14 Heat of formation + Delta-G solvation = 25.024612 kcal Electronic energy + Delta-G solvation = -31591.089818 eV Core-core repulsion = 27618.358327 eV Total energy + Delta-G solvation = -3972.731491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.64780 -41.41390 -39.36848 -36.75695 -36.62919 -35.42990 -34.05828 -32.91492 -32.44066 -30.75322 -29.58477 -28.05508 -28.02673 -26.65337 -26.30001 -24.53876 -23.88848 -22.73435 -21.58332 -21.02164 -20.37870 -19.29166 -18.79954 -18.19101 -17.55504 -17.30220 -16.83505 -16.45729 -16.12582 -15.66914 -15.53528 -15.24407 -15.20052 -14.72152 -14.58798 -14.43237 -14.33166 -13.92063 -13.79219 -13.69047 -13.62835 -13.26322 -13.11621 -13.04437 -12.97525 -12.94424 -12.84193 -12.46049 -12.23634 -12.17950 -12.12226 -11.91026 -11.88088 -11.82846 -11.69057 -11.57783 -11.41586 -10.94170 -10.71200 -10.55396 -10.46319 -9.65531 -8.85800 -7.79238 -5.21810 -0.65127 -0.17925 1.41488 1.43269 1.52349 1.62506 1.86463 2.46752 2.49234 2.65480 2.85560 3.21333 3.26332 3.32391 3.57750 3.60891 3.75415 3.78738 3.87999 3.99847 4.03116 4.16156 4.18963 4.32668 4.42000 4.48267 4.49824 4.52192 4.56079 4.68114 4.73909 4.81839 4.82448 4.86159 4.93394 4.94637 4.96572 5.07427 5.09961 5.14360 5.22235 5.24894 5.32713 5.37791 5.42041 5.46142 5.57576 5.72896 5.88788 6.30665 6.47242 6.85334 7.04210 7.09184 7.80947 8.41602 9.23211 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.003555 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.855387 B = 7874.499604 C = 8519.271987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.224 3.776 3 N -0.529 5.529 4 C 0.334 3.666 5 C -0.029 4.029 6 C -0.138 4.138 7 C -0.134 4.134 8 N -0.520 5.520 9 C 0.187 3.813 10 C -0.250 4.250 11 C 0.576 3.424 12 O -0.559 6.559 13 N -0.591 5.591 14 C 0.089 3.911 15 C -0.105 4.105 16 C -0.095 4.095 17 H 0.126 0.874 18 C 0.134 3.866 19 N -0.619 5.619 20 C -0.236 4.236 21 H 0.086 0.914 22 C -0.068 4.068 23 N -0.946 5.946 24 Si 0.974 3.026 25 H -0.289 1.289 26 H -0.299 1.299 27 H -0.263 1.263 28 C 0.163 3.837 29 C 0.119 3.881 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.185 0.815 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.026 0.974 47 H 0.038 0.962 48 H 0.241 0.759 49 H 0.062 0.938 50 H -0.020 1.020 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.102 15.534 -15.153 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.077 3.923 3 N -0.244 5.244 4 C 0.068 3.932 5 C -0.049 4.049 6 C -0.196 4.196 7 C -0.192 4.192 8 N -0.234 5.234 9 C 0.020 3.980 10 C -0.258 4.258 11 C 0.364 3.636 12 O -0.438 6.438 13 N -0.323 5.323 14 C -0.033 4.033 15 C -0.143 4.143 16 C -0.114 4.114 17 H 0.143 0.857 18 C 0.010 3.990 19 N -0.345 5.345 20 C -0.365 4.365 21 H 0.104 0.896 22 C -0.261 4.261 23 N -0.596 5.596 24 Si 0.803 3.197 25 H -0.216 1.216 26 H -0.226 1.226 27 H -0.188 1.188 28 C 0.037 3.963 29 C 0.015 3.985 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.201 0.799 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.118 0.882 45 H 0.132 0.868 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.080 0.920 50 H -0.002 1.002 Dipole moment (debyes) X Y Z Total from point charges 6.972 16.367 -14.605 23.017 hybrid contribution -0.717 -1.744 1.715 2.549 sum 6.255 14.623 -12.890 20.472 Atomic orbital electron populations 1.20869 0.86019 1.04474 1.04453 1.22115 0.98627 0.86400 0.85133 1.68297 1.10064 1.29072 1.16943 1.24153 0.86467 0.95953 0.86645 1.20221 0.97369 0.88572 0.98714 1.21793 0.99107 1.03886 0.94804 1.21763 0.99047 1.03847 0.94509 1.68325 1.40885 0.98199 1.16026 1.23919 0.90585 0.97195 0.86293 1.21496 0.96988 0.95295 1.12002 1.17654 0.84352 0.82995 0.78618 1.90795 1.25755 1.84123 1.43152 1.48210 1.21989 1.11054 1.51046 1.22792 0.84732 1.01336 0.94450 1.22844 1.02060 0.92978 0.96369 1.23100 0.95758 0.96734 0.95828 0.85653 1.21410 0.95750 0.97742 0.84130 1.44394 1.21793 1.65495 1.02783 1.19420 1.03165 1.29019 0.84896 0.89585 1.25660 0.97608 1.01831 1.01018 1.70218 1.17211 1.47796 1.24348 0.85133 0.76897 0.78234 0.79434 1.21621 1.22565 1.18788 1.21330 0.86414 0.93585 0.94981 1.22496 0.97067 0.82073 0.96899 0.89648 0.89321 0.87855 0.90355 0.87603 0.93987 0.92256 0.88749 0.93063 0.89013 0.92052 0.79858 0.88911 0.91521 0.88169 0.86830 0.95561 0.94360 0.94962 0.91999 1.00235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.77 9.31 71.24 0.66 -2.10 16 2 C 0.22 6.85 6.86 42.92 0.29 7.15 16 3 N -0.53 -15.05 10.22 -175.03 -1.79 -16.84 16 4 C 0.33 8.65 6.34 138.70 0.88 9.53 16 5 C -0.03 -0.52 3.25 -11.54 -0.04 -0.56 16 6 C -0.14 -2.29 9.09 71.98 0.65 -1.64 16 7 C -0.13 -1.89 9.09 71.98 0.65 -1.24 16 8 N -0.52 -14.22 9.77 -186.79 -1.82 -16.04 16 9 C 0.19 5.45 9.21 85.07 0.78 6.23 16 10 C -0.25 -8.22 5.53 -19.91 -0.11 -8.33 16 11 C 0.58 22.35 6.72 86.78 0.58 22.93 16 12 O -0.56 -26.21 14.33 -3.87 -0.06 -26.26 16 13 N -0.59 -20.58 3.01 -789.05 -2.37 -22.95 16 14 C 0.09 2.23 4.69 86.84 0.41 2.63 16 15 C -0.10 -2.05 6.31 31.98 0.20 -1.84 16 16 C -0.10 -2.70 4.27 -9.01 -0.04 -2.74 16 17 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 18 C 0.13 4.97 6.39 86.65 0.55 5.53 16 19 N -0.62 -31.40 3.37 -698.82 -2.36 -33.76 16 20 C -0.24 -13.26 10.25 84.04 0.86 -12.39 16 21 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 22 C -0.07 -4.01 5.48 84.86 0.47 -3.55 16 23 N -0.95 -60.20 10.17 21.65 0.22 -59.98 16 24 Si 0.97 47.28 29.55 68.60 2.03 49.30 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 27 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 28 C 0.16 8.44 5.15 86.59 0.45 8.89 16 29 C 0.12 4.48 3.68 45.99 0.17 4.65 16 30 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.08 2.37 6.18 -2.38 -0.01 2.35 16 34 H 0.11 1.73 8.09 -2.39 -0.02 1.71 16 35 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 1.11 8.01 -2.39 -0.02 1.09 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.06 0.98 8.01 -2.39 -0.02 0.96 16 41 H 0.18 4.96 5.57 -2.91 -0.02 4.95 16 42 H 0.09 1.91 6.58 -2.39 -0.02 1.89 16 43 H 0.07 1.83 6.63 -2.39 -0.02 1.81 16 44 H 0.10 1.51 8.14 -2.39 -0.02 1.50 16 45 H 0.11 1.67 7.96 -2.39 -0.02 1.65 16 46 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.04 1.33 6.78 -2.39 -0.02 1.31 16 48 H 0.24 15.19 8.31 -92.71 -0.77 14.42 16 49 H 0.06 3.81 5.18 -2.38 -0.01 3.80 16 50 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 Total: -1.00 -78.22 388.06 2.23 -75.99 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.95 Total: 17.38 kcal Atomic # 6 Polarization: 25.72 SS G_CDS: 7.43 Total: 33.15 kcal Atomic # 7 Polarization: -141.44 SS G_CDS: -8.12 Total: -149.56 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.06 Total: -26.26 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -78.22 2.23 -75.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076329458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.019 kcal (2) G-P(sol) polarization free energy of solvation -78.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds