Wall clock time and date at job start Wed Apr 1 2020 04:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32146 * 119.90583 * 2 1 4 4 C 1.32076 * 120.07285 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.06186 * 179.97438 * 4 3 2 6 6 C 1.39446 * 119.87404 * 0.02562 * 4 3 2 7 7 C 1.48153 * 120.09800 * 180.02562 * 6 4 3 8 8 O 1.21518 * 119.99622 * 354.21432 * 7 6 4 9 9 N 1.34775 * 120.00227 * 174.21418 * 7 6 4 10 10 C 1.46497 * 120.00089 * 180.02562 * 9 7 6 11 11 H 1.08999 * 112.94859 * 336.39808 * 10 9 7 12 12 C 1.53950 * 113.66789 * 107.81010 * 10 9 7 13 13 C 1.53945 * 87.29553 * 139.20104 * 12 10 9 14 14 H 1.08999 * 113.74831 * 220.78027 * 13 12 10 15 15 N 1.46508 * 113.66031 * 89.74033 * 13 12 10 16 16 C 1.36937 * 119.99943 * 107.81180 * 15 13 12 17 17 H 1.08004 * 120.00126 * 0.02562 * 16 15 13 18 18 C 1.38815 * 120.00323 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99509 * 0.02562 * 18 16 15 20 20 Si 1.86789 * 120.00129 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47379 * 90.00274 * 20 18 16 22 22 H 1.48504 * 109.47018 * 209.99989 * 20 18 16 23 23 H 1.48498 * 109.47371 * 329.99931 * 20 18 16 24 24 C 1.52902 * 86.78675 * 335.26775 * 13 12 10 25 25 C 1.52912 * 121.13696 * 150.61458 * 24 13 12 26 26 C 1.53949 * 86.78276 * 100.82546 * 25 24 13 27 27 C 1.53075 * 121.07048 * 259.16041 * 24 13 12 28 28 N 1.32999 * 119.80560 * 0.26683 * 6 4 3 29 29 C 1.31799 * 119.92744 * 359.45790 * 28 6 4 30 30 C 1.50702 * 119.94058 * 180.25325 * 29 28 6 31 31 H 1.08998 * 109.46865 * 89.99668 * 1 2 3 32 32 H 1.08999 * 109.47127 * 209.99851 * 1 2 3 33 33 H 1.09000 * 109.46797 * 330.00203 * 1 2 3 34 34 H 1.09002 * 109.47245 * 263.31129 * 5 4 3 35 35 H 1.08995 * 109.47590 * 23.31621 * 5 4 3 36 36 H 1.09001 * 109.46902 * 143.31401 * 5 4 3 37 37 H 0.97000 * 120.00018 * 359.97438 * 9 7 6 38 38 H 1.08999 * 113.57753 * 24.59913 * 12 10 9 39 39 H 1.09001 * 113.58079 * 253.81023 * 12 10 9 40 40 H 0.96988 * 119.99994 * 287.80991 * 15 13 12 41 41 H 0.96996 * 119.99366 * 180.02562 * 19 18 16 42 42 H 1.08994 * 113.66683 * 346.34776 * 25 24 13 43 43 H 1.09010 * 113.66134 * 215.29332 * 25 24 13 44 44 H 1.08996 * 113.58447 * 139.33369 * 26 25 24 45 45 H 1.08999 * 113.57750 * 270.05591 * 26 25 24 46 46 H 1.08997 * 113.66297 * 144.67532 * 27 24 13 47 47 H 1.09003 * 113.70803 * 13.56871 * 27 24 13 48 48 H 1.09001 * 109.46438 * 270.29766 * 30 29 28 49 49 H 1.09002 * 109.46599 * 30.29170 * 30 29 28 50 50 H 1.08999 * 109.47388 * 150.29717 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1455 0.0000 4 6 3.4865 1.1493 0.0005 5 6 4.2376 2.4558 -0.0001 6 6 4.1846 -0.0578 0.0005 7 6 5.6662 -0.0593 0.0017 8 8 6.2748 0.9872 -0.1035 9 7 6.3388 -1.2212 0.1193 10 6 7.8038 -1.2226 0.1210 11 1 8.2302 -0.3481 -0.3705 12 6 8.4199 -1.5178 1.5006 13 6 9.4570 -2.3898 0.7698 14 1 9.6889 -3.3214 1.2858 15 7 10.6546 -1.6553 0.3543 16 6 11.8426 -1.8589 1.0043 17 1 11.8967 -2.5614 1.8230 18 6 12.9775 -1.1634 0.6105 19 7 12.9116 -0.3078 -0.3875 20 14 14.5977 -1.4408 1.4976 21 1 15.3437 -2.5399 0.8338 22 1 15.4062 -0.1960 1.4523 23 1 14.3314 -1.8068 2.9119 24 6 8.4168 -2.5454 -0.3400 25 6 8.8382 -2.7571 -1.7946 26 6 8.5303 -4.2496 -1.5757 27 6 7.5684 -3.8143 -0.4553 28 7 3.5166 -1.2078 -0.0054 29 6 2.1986 -1.2027 -0.0004 30 6 1.4413 -2.5056 -0.0013 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 4.5229 2.7105 -1.0208 35 1 3.6005 3.2414 0.4059 36 1 5.1329 2.3604 0.6143 37 1 5.8530 -2.0565 0.2036 38 1 7.7618 -2.0835 2.1600 39 1 8.8504 -0.6401 1.9828 40 1 10.6061 -1.0248 -0.3811 41 1 13.7047 0.1779 -0.6630 42 1 9.8922 -2.5503 -1.9793 43 1 8.1778 -2.2755 -2.5159 44 1 8.0297 -4.7203 -2.4218 45 1 9.3853 -4.8232 -1.2178 46 1 6.5507 -3.6303 -0.7995 47 1 7.6096 -4.4509 0.4285 48 1 1.2596 -2.8193 -1.0292 49 1 2.0280 -3.2671 0.5127 50 1 0.4889 -2.3727 0.5119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078675144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:22 Heat of formation + Delta-G solvation = 44.025026 kcal Electronic energy + Delta-G solvation = -30448.456548 eV Core-core repulsion = 26476.548977 eV Total energy + Delta-G solvation = -3971.907571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.65111 -41.81512 -40.06434 -36.54281 -36.31053 -35.54569 -35.38032 -33.99463 -31.63976 -31.15739 -29.86506 -27.55399 -26.77582 -26.21393 -25.52182 -24.76539 -24.26606 -22.99045 -21.78332 -21.68105 -19.62970 -19.51714 -18.93154 -18.24654 -17.21407 -17.02095 -16.68399 -16.38870 -16.23404 -16.12325 -15.71740 -15.59395 -14.99207 -14.58593 -14.48321 -14.31025 -13.97892 -13.97101 -13.79167 -13.71664 -13.57903 -13.41648 -13.24874 -13.14989 -13.12843 -12.85038 -12.82517 -12.69725 -12.57082 -12.47251 -12.18978 -12.01484 -11.87296 -11.79821 -11.33845 -11.28477 -11.06846 -10.92609 -10.74911 -10.19529 -10.11800 -9.81126 -9.01855 -7.94814 -5.24038 -0.75442 -0.11031 1.46884 1.48682 1.54653 1.57015 1.91509 2.53193 2.54496 2.79120 2.88302 3.22013 3.36217 3.39263 3.51092 3.57442 3.76066 3.80732 3.94063 3.98282 4.01521 4.14703 4.16627 4.21178 4.53676 4.55110 4.61823 4.63127 4.67894 4.75190 4.75721 4.80034 4.82609 4.86254 4.88468 4.98495 5.02278 5.09033 5.10101 5.11655 5.18430 5.24351 5.31117 5.41043 5.48896 5.52833 5.58612 5.68798 6.03261 6.26555 6.38138 6.62349 7.06321 7.32334 8.07523 8.30487 9.28490 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017718 B = 0.002562 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.892112 B =10924.899098 C =11910.863751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.109 3.891 3 N -0.460 5.460 4 C 0.124 3.876 5 C -0.100 4.100 6 C 0.002 3.998 7 C 0.566 3.434 8 O -0.556 6.556 9 N -0.679 5.679 10 C 0.144 3.856 11 H 0.078 0.922 12 C -0.170 4.170 13 C 0.183 3.817 14 H 0.075 0.925 15 N -0.714 5.714 16 C -0.240 4.240 17 H 0.081 0.919 18 C -0.076 4.076 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.286 1.286 22 H -0.299 1.299 23 H -0.268 1.268 24 C -0.114 4.114 25 C -0.133 4.133 26 C -0.123 4.123 27 C -0.097 4.097 28 N -0.416 5.416 29 C 0.068 3.932 30 C -0.100 4.100 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.417 0.583 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.373 0.627 41 H 0.250 0.750 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.396 -7.466 0.163 31.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.035 4.035 3 N -0.176 5.176 4 C -0.015 4.015 5 C -0.158 4.158 6 C -0.137 4.137 7 C 0.352 3.648 8 O -0.434 6.434 9 N -0.329 5.329 10 C 0.039 3.961 11 H 0.096 0.904 12 C -0.212 4.212 13 C 0.072 3.928 14 H 0.093 0.907 15 N -0.350 5.350 16 C -0.371 4.371 17 H 0.098 0.902 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.803 3.197 21 H -0.213 1.213 22 H -0.226 1.226 23 H -0.193 1.193 24 C -0.116 4.116 25 C -0.171 4.171 26 C -0.160 4.160 27 C -0.134 4.134 28 N -0.133 5.133 29 C -0.077 4.077 30 C -0.157 4.157 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.256 0.744 38 H 0.118 0.882 39 H 0.061 0.939 40 H 0.205 0.795 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.117 0.883 47 H 0.105 0.895 48 H 0.118 0.882 49 H 0.102 0.898 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -29.699 -6.773 0.214 30.462 hybrid contribution 1.481 0.641 -0.020 1.614 sum -28.217 -6.132 0.194 28.877 Atomic orbital electron populations 1.21054 0.83989 1.05867 1.05313 1.23261 1.00690 0.88261 0.91239 1.68383 1.07166 1.30285 1.11764 1.22387 0.90448 0.96652 0.91998 1.20937 0.99555 0.91126 1.04154 1.21683 0.94707 0.91138 1.06195 1.17997 0.85817 0.84344 0.76684 1.90763 1.69387 1.32014 1.51252 1.45694 1.06686 1.09089 1.71426 1.22105 0.78029 0.98267 0.97688 0.90416 1.24167 0.99556 1.00940 0.96506 1.20853 0.84758 0.94047 0.93174 0.90670 1.42238 1.04955 1.48609 1.39239 1.19665 0.87394 1.18730 1.11350 0.90157 1.25581 1.01559 0.99743 0.99913 1.69841 1.29275 1.31317 1.31568 0.85133 0.79726 0.76382 0.78473 1.21257 1.22614 1.19318 1.23507 0.97498 0.94491 0.96151 1.22646 1.00497 0.98277 0.95651 1.22681 0.99366 0.94818 0.99168 1.22570 0.97712 0.93467 0.99663 1.68129 1.09918 1.27736 1.07559 1.22904 0.89356 0.98873 0.96594 1.20972 0.99939 0.89694 1.05124 0.87736 0.86447 0.89898 0.89880 0.89656 0.89296 0.74433 0.88215 0.93918 0.79515 0.94114 0.93671 0.90438 0.89760 0.90846 0.88326 0.89467 0.88210 0.89799 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 9.78 71.23 0.70 0.02 16 2 C 0.11 1.81 6.79 42.63 0.29 2.10 16 3 N -0.46 -10.66 10.34 -170.48 -1.76 -12.43 16 4 C 0.12 3.32 6.82 42.81 0.29 3.61 16 5 C -0.10 -2.63 8.88 71.23 0.63 -2.00 16 6 C 0.00 0.05 6.75 41.89 0.28 0.33 16 7 C 0.57 18.41 7.75 86.88 0.67 19.09 16 8 O -0.56 -21.60 12.93 -3.77 -0.05 -21.65 16 9 N -0.68 -19.87 5.24 -443.73 -2.33 -22.20 16 10 C 0.14 5.03 4.03 45.28 0.18 5.21 16 11 H 0.08 3.37 7.46 -2.39 -0.02 3.35 16 12 C -0.17 -6.14 7.68 31.23 0.24 -5.90 16 13 C 0.18 7.18 4.36 45.28 0.20 7.37 16 14 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 15 N -0.71 -36.33 4.85 -321.56 -1.56 -37.89 16 16 C -0.24 -13.34 9.97 84.03 0.84 -12.50 16 17 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 18 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 19 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 20 Si 0.97 46.79 29.55 68.60 2.03 48.81 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 C -0.11 -3.64 0.92 -52.26 -0.05 -3.69 16 25 C -0.13 -4.38 7.62 30.89 0.24 -4.14 16 26 C -0.12 -3.14 8.08 31.23 0.25 -2.88 16 27 C -0.10 -2.22 7.16 30.94 0.22 -1.99 16 28 N -0.42 -9.43 9.65 -172.52 -1.67 -11.09 16 29 C 0.07 1.12 6.79 42.68 0.29 1.41 16 30 C -0.10 -0.65 9.78 71.24 0.70 0.05 16 31 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.12 0.04 5.94 -2.39 -0.01 0.02 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 2.70 5.84 -2.39 -0.01 2.69 16 37 H 0.42 10.07 6.41 -92.71 -0.59 9.48 16 38 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.37 20.90 7.62 -92.72 -0.71 20.19 16 41 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.04 1.83 7.58 -2.39 -0.02 1.81 16 43 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.10 1.90 7.03 -2.39 -0.02 1.88 16 47 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.10 0.41 8.14 -2.39 -0.02 0.40 16 49 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.11 0.05 5.94 -2.39 -0.01 0.04 16 Total: -1.00 -74.30 401.39 1.07 -73.24 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -0.32 Total: 41.51 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 6.44 Total: 2.14 kcal Atomic # 7 Polarization: -137.02 SS G_CDS: -7.03 Total: -144.05 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -74.30 1.07 -73.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078675144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.263 kcal (2) G-P(sol) polarization free energy of solvation -74.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds