Wall clock time and date at job start Wed Apr 1 2020 04:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32141 * 119.89940 * 2 1 4 4 C 1.32083 * 120.07122 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.06188 * 180.02562 * 4 3 2 6 6 C 1.39442 * 119.87320 * 0.02562 * 4 3 2 7 7 C 1.48150 * 120.09601 * 179.97438 * 6 4 3 8 8 O 1.21515 * 120.00075 * 354.21075 * 7 6 4 9 9 N 1.34780 * 119.99696 * 174.20936 * 7 6 4 10 10 C 1.46500 * 119.99929 * 180.02562 * 9 7 6 11 11 H 1.09006 * 112.88112 * 333.15913 * 10 9 7 12 12 C 1.53949 * 113.66385 * 104.50458 * 10 9 7 13 13 C 1.53952 * 87.29146 * 89.73925 * 12 10 9 14 14 H 1.09001 * 113.65980 * 139.30247 * 13 12 10 15 15 N 1.46498 * 113.65869 * 270.26243 * 13 12 10 16 16 C 1.36938 * 119.99753 * 255.76947 * 15 13 12 17 17 H 1.08004 * 120.00431 * 359.72629 * 16 15 13 18 18 C 1.38814 * 120.00171 * 179.72899 * 16 15 13 19 19 N 1.31613 * 120.00141 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99764 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47146 * 90.00160 * 20 18 16 22 22 H 1.48495 * 109.47425 * 210.00017 * 20 18 16 23 23 H 1.48499 * 109.47183 * 330.00000 * 20 18 16 24 24 C 1.52901 * 113.66340 * 201.69686 * 10 9 7 25 25 C 1.52910 * 121.14131 * 36.14783 * 24 10 9 26 26 C 1.53957 * 86.78414 * 100.81424 * 25 24 10 27 27 C 1.52916 * 121.13674 * 144.70743 * 24 10 9 28 28 N 1.33006 * 119.80571 * 0.27019 * 6 4 3 29 29 C 1.31807 * 119.92210 * 359.45121 * 28 6 4 30 30 C 1.50701 * 119.92990 * 180.27287 * 29 28 6 31 31 H 1.08997 * 109.46526 * 89.99982 * 1 2 3 32 32 H 1.08993 * 109.46509 * 210.00078 * 1 2 3 33 33 H 1.09002 * 109.46875 * 329.99827 * 1 2 3 34 34 H 1.08999 * 109.47194 * 263.26358 * 5 4 3 35 35 H 1.09001 * 109.47332 * 23.26892 * 5 4 3 36 36 H 1.09000 * 109.46831 * 143.26581 * 5 4 3 37 37 H 0.96998 * 119.99903 * 0.02562 * 9 7 6 38 38 H 1.08998 * 113.58090 * 335.13231 * 12 10 9 39 39 H 1.09001 * 113.65205 * 204.35098 * 12 10 9 40 40 H 0.96991 * 120.00375 * 75.50386 * 15 13 12 41 41 H 0.97003 * 119.99734 * 180.02562 * 19 18 16 42 42 H 1.08993 * 113.66272 * 215.29024 * 25 24 10 43 43 H 1.09008 * 113.65588 * 346.34664 * 25 24 10 44 44 H 1.08998 * 113.58107 * 270.13978 * 26 25 24 45 45 H 1.08998 * 113.64550 * 139.34981 * 26 25 24 46 46 H 1.08999 * 113.65620 * 13.65395 * 27 24 10 47 47 H 1.08997 * 113.66147 * 144.70587 * 27 24 10 48 48 H 1.09002 * 109.46966 * 270.27629 * 30 29 28 49 49 H 1.08996 * 109.47411 * 30.28155 * 30 29 28 50 50 H 1.08998 * 109.46631 * 150.28064 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4866 1.1495 -0.0005 5 6 4.2376 2.4560 0.0001 6 6 4.1847 -0.0576 -0.0016 7 6 5.6662 -0.0589 -0.0027 8 8 6.2747 0.9876 -0.1089 9 7 6.3391 -1.2208 0.1140 10 6 7.8041 -1.2221 0.1134 11 1 8.2285 -0.3764 -0.4277 12 6 8.4224 -1.4372 1.5068 13 6 8.3853 -2.9474 1.2097 14 1 9.2744 -3.4812 1.5454 15 7 7.1398 -3.5977 1.6245 16 6 7.1147 -4.3716 2.7540 17 1 8.0141 -4.5061 3.3366 18 6 5.9333 -4.9833 3.1501 19 7 5.9090 -5.7266 4.2360 20 14 4.3775 -4.7501 2.1429 21 1 4.2917 -5.8146 1.1109 22 1 3.1934 -4.8295 3.0354 23 1 4.4105 -3.4210 1.4815 24 6 8.4165 -2.5693 -0.2715 25 6 7.7647 -3.4609 -1.3291 26 6 8.8266 -2.9279 -2.3081 27 6 9.7119 -2.6468 -1.0803 28 7 3.5167 -1.2077 -0.0075 29 6 2.1987 -1.2025 -0.0015 30 6 1.4416 -2.5056 -0.0020 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3632 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 4.5227 2.7117 -1.0204 35 1 3.6003 3.2413 0.4068 36 1 5.1329 2.3602 0.6143 37 1 5.8534 -2.0562 0.1984 38 1 7.7678 -1.1376 2.3252 39 1 9.4314 -1.0366 1.6041 40 1 6.3321 -3.4771 1.1013 41 1 5.0835 -6.1544 4.5126 42 1 7.8577 -4.5266 -1.1204 43 1 6.7470 -3.1648 -1.5839 44 1 8.5178 -2.0271 -2.8383 45 1 9.2317 -3.6916 -2.9720 46 1 10.2498 -1.7004 -1.1363 47 1 10.3522 -3.4837 -0.8017 48 1 1.2587 -2.8190 -1.0298 49 1 2.0287 -3.2671 0.5111 50 1 0.4898 -2.3729 0.5123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078675145.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:25 Heat of formation + Delta-G solvation = 53.040161 kcal Electronic energy + Delta-G solvation = -31743.313050 eV Core-core repulsion = 27771.796404 eV Total energy + Delta-G solvation = -3971.516645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.73639 -41.97197 -40.06775 -36.87459 -36.29928 -35.46385 -35.39072 -33.94308 -32.35310 -31.26104 -29.95926 -27.64681 -26.88001 -26.19452 -25.43220 -24.81451 -24.28627 -23.05144 -21.84411 -21.52555 -20.42702 -19.50911 -19.19646 -18.08905 -17.15765 -17.04505 -16.70442 -16.54621 -16.38833 -16.22425 -15.80292 -15.43045 -15.27509 -14.76933 -14.55022 -14.48243 -14.11732 -13.99554 -13.90541 -13.82089 -13.75362 -13.45119 -13.36874 -13.23022 -13.18306 -13.03944 -12.92790 -12.79664 -12.58553 -12.52770 -12.09108 -12.04330 -11.92879 -11.87213 -11.41676 -11.23277 -11.13758 -10.90905 -10.76857 -10.25085 -10.20018 -9.90511 -9.31230 -8.05385 -5.39016 -0.81415 -0.17886 1.33150 1.35531 1.44350 1.45876 1.80951 2.43458 2.48036 2.69735 2.83096 3.14399 3.22639 3.26885 3.39916 3.53463 3.69596 3.74942 3.87537 3.89155 3.95557 4.01972 4.07938 4.16228 4.44296 4.50197 4.55876 4.58649 4.63043 4.66084 4.70295 4.72635 4.79973 4.80820 4.89505 4.92390 4.95450 4.96351 5.02880 5.08926 5.13059 5.15871 5.20384 5.38411 5.45859 5.52143 5.57683 5.76235 5.98524 6.18279 6.25359 6.53244 6.90844 7.03346 7.79708 7.96874 9.15143 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008761 B = 0.005180 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.107628 B = 5404.125202 C = 7378.935780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.115 3.885 3 N -0.454 5.454 4 C 0.130 3.870 5 C -0.096 4.096 6 C -0.008 4.008 7 C 0.575 3.425 8 O -0.539 6.539 9 N -0.686 5.686 10 C 0.150 3.850 11 H 0.109 0.891 12 C -0.177 4.177 13 C 0.164 3.836 14 H 0.067 0.933 15 N -0.726 5.726 16 C -0.227 4.227 17 H 0.061 0.939 18 C -0.061 4.061 19 N -0.980 5.980 20 Si 0.939 3.061 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.243 1.243 24 C -0.122 4.122 25 C -0.132 4.132 26 C -0.124 4.124 27 C -0.091 4.091 28 N -0.429 5.429 29 C 0.058 3.942 30 C -0.109 4.109 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.404 0.596 38 H 0.042 0.958 39 H 0.111 0.889 40 H 0.361 0.639 41 H 0.257 0.743 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.109 0.891 49 H 0.056 0.944 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.683 12.210 -15.881 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.028 4.028 3 N -0.170 5.170 4 C -0.009 4.009 5 C -0.154 4.154 6 C -0.148 4.148 7 C 0.360 3.640 8 O -0.418 6.418 9 N -0.336 5.336 10 C 0.045 3.955 11 H 0.127 0.873 12 C -0.218 4.218 13 C 0.054 3.946 14 H 0.085 0.915 15 N -0.368 5.368 16 C -0.358 4.358 17 H 0.079 0.921 18 C -0.253 4.253 19 N -0.631 5.631 20 Si 0.766 3.234 21 H -0.203 1.203 22 H -0.224 1.224 23 H -0.168 1.168 24 C -0.124 4.124 25 C -0.170 4.170 26 C -0.162 4.162 27 C -0.129 4.129 28 N -0.146 5.146 29 C -0.087 4.087 30 C -0.166 4.166 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.241 0.759 38 H 0.061 0.939 39 H 0.130 0.870 40 H 0.195 0.805 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.127 0.873 49 H 0.075 0.925 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.092 12.844 -15.766 21.228 hybrid contribution -1.135 -0.807 0.433 1.458 sum -7.227 12.038 -15.333 20.790 Atomic orbital electron populations 1.21054 0.83764 1.05769 1.05571 1.23161 1.00706 0.87900 0.91016 1.68424 1.07256 1.29470 1.11836 1.22574 0.90396 0.96701 0.91196 1.20980 0.99510 0.90181 1.04684 1.21905 0.95396 0.91033 1.06420 1.17753 0.85552 0.84029 0.76618 1.90683 1.68959 1.30788 1.51325 1.45710 1.07362 1.09189 1.71318 1.21606 0.78407 0.97941 0.97558 0.87280 1.24203 1.01480 1.00028 0.96090 1.21285 0.88716 0.91362 0.93198 0.91462 1.42401 1.07817 1.57893 1.28727 1.19040 0.96100 1.20095 1.00601 0.92149 1.25441 1.00952 1.00012 0.98886 1.69873 1.27703 1.38328 1.27180 0.85646 0.79856 0.79500 0.78400 1.20256 1.22359 1.16793 1.23377 1.00278 0.94625 0.94145 1.22626 0.98447 0.99364 0.96517 1.22778 0.95972 1.01387 0.96021 1.22531 0.93431 1.03416 0.93519 1.68177 1.10293 1.28886 1.07237 1.22722 0.89438 0.98806 0.97690 1.21025 1.00048 0.90204 1.05372 0.87155 0.87277 0.89296 0.88851 0.89492 0.88898 0.75858 0.93925 0.87039 0.80483 0.93464 0.90370 0.93022 0.89932 0.89889 0.89277 0.88577 0.87283 0.92469 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 9.78 71.24 0.70 -0.58 16 2 C 0.12 2.65 6.79 42.63 0.29 2.94 16 3 N -0.45 -12.23 10.34 -170.48 -1.76 -13.99 16 4 C 0.13 3.87 6.82 42.81 0.29 4.16 16 5 C -0.10 -2.43 8.88 71.24 0.63 -1.79 16 6 C -0.01 -0.27 6.75 41.89 0.28 0.01 16 7 C 0.58 20.10 7.75 86.88 0.67 20.77 16 8 O -0.54 -18.98 12.98 -3.76 -0.05 -19.02 16 9 N -0.69 -23.96 4.70 -443.74 -2.09 -26.05 16 10 C 0.15 4.69 4.08 45.28 0.18 4.88 16 11 H 0.11 3.18 7.54 -2.38 -0.02 3.16 16 12 C -0.18 -6.04 7.68 31.23 0.24 -5.80 16 13 C 0.16 6.15 4.35 45.28 0.20 6.35 16 14 H 0.07 2.58 8.12 -2.39 -0.02 2.56 16 15 N -0.73 -33.64 4.78 -321.55 -1.54 -35.17 16 16 C -0.23 -12.94 10.46 84.03 0.88 -12.06 16 17 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 18 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 19 N -0.98 -63.02 13.97 21.65 0.30 -62.71 16 20 Si 0.94 45.30 27.36 68.60 1.88 47.17 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 23 H -0.24 -10.88 6.39 99.48 0.64 -10.24 16 24 C -0.12 -3.57 0.76 -52.31 -0.04 -3.61 16 25 C -0.13 -3.74 7.18 30.89 0.22 -3.52 16 26 C -0.12 -2.62 8.08 31.23 0.25 -2.37 16 27 C -0.09 -1.97 7.84 30.89 0.24 -1.72 16 28 N -0.43 -14.24 9.65 -172.53 -1.67 -15.91 16 29 C 0.06 1.55 6.79 42.68 0.29 1.83 16 30 C -0.11 -2.14 9.78 71.24 0.70 -1.44 16 31 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 0.87 5.94 -2.39 -0.01 0.86 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.09 2.64 5.85 -2.39 -0.01 2.62 16 37 H 0.40 15.25 5.15 -92.71 -0.48 14.78 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.36 16.28 3.25 -92.72 -0.30 15.98 16 41 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.05 1.54 7.51 -2.38 -0.02 1.53 16 44 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.06 1.44 7.76 -2.39 -0.02 1.42 16 50 H 0.12 1.46 5.94 -2.39 -0.01 1.45 16 Total: -1.00 -74.31 394.80 1.70 -72.60 By element: Atomic # 1 Polarization: 48.06 SS G_CDS: 0.13 Total: 48.19 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 6.50 Total: 4.89 kcal Atomic # 7 Polarization: -147.09 SS G_CDS: -6.75 Total: -153.83 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.05 Total: -19.02 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.17 kcal Total: -74.31 1.70 -72.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078675145.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.644 kcal (2) G-P(sol) polarization free energy of solvation -74.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds