Wall clock time and date at job start Wed Apr 1 2020 04:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32137 * 119.90071 * 2 1 4 4 C 1.32077 * 120.07392 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.06621 * 179.97438 * 4 3 2 6 6 C 1.39441 * 119.86990 * 0.02562 * 4 3 2 7 7 C 1.48150 * 120.09617 * 180.02562 * 6 4 3 8 8 O 1.21523 * 120.00335 * 354.21164 * 7 6 4 9 9 N 1.34777 * 120.00372 * 174.21468 * 7 6 4 10 10 C 1.46496 * 120.00361 * 180.02562 * 9 7 6 11 11 H 1.09004 * 112.95232 * 23.59004 * 10 9 7 12 12 C 1.53954 * 113.66187 * 252.18517 * 10 9 7 13 13 C 1.53941 * 87.29359 * 270.26370 * 12 10 9 14 14 H 1.08995 * 113.66714 * 89.73440 * 13 12 10 15 15 N 1.46507 * 113.66451 * 220.79215 * 13 12 10 16 16 C 1.36933 * 119.99827 * 252.19188 * 15 13 12 17 17 H 1.07996 * 120.00384 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99622 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00490 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99944 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47247 * 89.99893 * 20 18 16 22 22 H 1.48496 * 109.47600 * 210.00120 * 20 18 16 23 23 H 1.48507 * 109.47331 * 330.00358 * 20 18 16 24 24 C 1.52905 * 86.78487 * 335.26141 * 13 12 10 25 25 C 1.52910 * 121.13930 * 150.62433 * 24 13 12 26 26 C 1.53953 * 86.78085 * 100.81897 * 25 24 13 27 27 C 1.52908 * 121.13801 * 259.18783 * 24 13 12 28 28 N 1.33002 * 119.80693 * 0.27038 * 6 4 3 29 29 C 1.31798 * 119.92661 * 359.45656 * 28 6 4 30 30 C 1.50691 * 119.93658 * 180.25263 * 29 28 6 31 31 H 1.08998 * 109.47558 * 90.00121 * 1 2 3 32 32 H 1.09006 * 109.46880 * 209.99838 * 1 2 3 33 33 H 1.09002 * 109.47553 * 329.99627 * 1 2 3 34 34 H 1.08992 * 109.47103 * 263.31120 * 5 4 3 35 35 H 1.09001 * 109.46923 * 23.31339 * 5 4 3 36 36 H 1.09002 * 109.46804 * 143.30601 * 5 4 3 37 37 H 0.96994 * 119.99715 * 359.97438 * 9 7 6 38 38 H 1.09003 * 113.58386 * 155.65796 * 12 10 9 39 39 H 1.09002 * 113.57981 * 24.86473 * 12 10 9 40 40 H 0.96995 * 119.99730 * 72.18177 * 15 13 12 41 41 H 0.96991 * 120.00566 * 179.97438 * 19 18 16 42 42 H 1.08999 * 113.66345 * 346.34777 * 25 24 13 43 43 H 1.09003 * 113.66217 * 215.28544 * 25 24 13 44 44 H 1.09006 * 113.57533 * 139.33579 * 26 25 24 45 45 H 1.08990 * 113.57840 * 270.12872 * 26 25 24 46 46 H 1.09000 * 113.66595 * 144.70712 * 27 24 13 47 47 H 1.09002 * 113.66104 * 13.65168 * 27 24 13 48 48 H 1.09002 * 109.47003 * 270.29521 * 30 29 28 49 49 H 1.09003 * 109.47516 * 30.29418 * 30 29 28 50 50 H 1.09006 * 109.47374 * 150.29769 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4864 1.1495 0.0005 5 6 4.2375 2.4560 -0.0001 6 6 4.1846 -0.0576 0.0005 7 6 5.6660 -0.0590 0.0017 8 8 6.2748 0.9875 -0.1035 9 7 6.3388 -1.2209 0.1193 10 6 7.8038 -1.2222 0.1210 11 1 8.2294 -0.2671 0.4291 12 6 8.4227 -1.7864 -1.1708 13 6 8.3850 -3.1703 -0.4978 14 1 7.4584 -3.7169 -0.6728 15 7 9.5810 -3.9787 -0.7480 16 6 9.5138 -5.0596 -1.5861 17 1 8.5791 -5.3164 -2.0622 18 6 10.6471 -5.8251 -1.8236 19 7 11.7864 -5.5119 -1.2438 20 14 10.5553 -7.3000 -2.9662 21 1 10.8579 -6.8699 -4.3550 22 1 11.5449 -8.3208 -2.5374 23 1 9.1900 -7.8819 -2.9147 24 6 8.4157 -2.4263 0.8377 25 6 7.7632 -3.0180 2.0876 26 6 9.1790 -3.4394 2.5214 27 6 9.7107 -2.2948 1.6399 28 7 3.5165 -1.2077 -0.0055 29 6 2.1986 -1.2026 -0.0005 30 6 1.4415 -2.5055 -0.0015 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 4.5227 2.7106 -1.0207 35 1 3.6002 3.2416 0.4059 36 1 5.1327 2.3607 0.6144 37 1 5.8530 -2.0561 0.2036 38 1 9.4319 -1.4235 -1.3656 39 1 7.7685 -1.7058 -2.0390 40 1 10.4204 -3.7481 -0.3202 41 1 12.5781 -6.0470 -1.4094 42 1 7.1011 -3.8584 1.8794 43 1 7.3100 -2.2712 2.7397 44 1 9.3700 -3.2955 3.5850 45 1 9.4659 -4.4302 2.1696 46 1 9.8049 -1.3448 2.1661 47 1 10.6045 -2.5575 1.0740 48 1 1.2597 -2.8193 -1.0294 49 1 2.0281 -3.2670 0.5125 50 1 0.4890 -2.3728 0.5117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078675147.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:34 Heat of formation + Delta-G solvation = 65.810420 kcal Electronic energy + Delta-G solvation = -30473.691522 eV Core-core repulsion = 26502.728636 eV Total energy + Delta-G solvation = -3970.962885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.76345 -40.52621 -38.89122 -35.50072 -34.94107 -34.59303 -34.02517 -32.24468 -30.44908 -29.93615 -29.13933 -26.59792 -25.43089 -24.70362 -24.11380 -23.88778 -22.75085 -21.85073 -20.98043 -20.05338 -18.61133 -18.11407 -17.52160 -16.74124 -16.18596 -15.84782 -15.50392 -15.15562 -15.02446 -14.69458 -14.65002 -13.99281 -13.77219 -13.71238 -13.53439 -13.40332 -13.23131 -12.98164 -12.61891 -12.61167 -12.43689 -12.38321 -12.17692 -11.99012 -11.83245 -11.78438 -11.69392 -11.33179 -11.07937 -10.89177 -10.81121 -10.58458 -10.18130 -10.15263 -10.08110 -9.85005 -9.64386 -9.41620 -9.27677 -9.21680 -8.85110 -8.65721 -6.97535 -5.80247 -3.08594 0.12693 0.73621 2.56968 2.96634 3.41533 3.45056 3.47112 3.48344 3.62177 3.65776 4.03907 4.31503 4.56437 4.58675 4.74508 4.80270 4.88358 4.99285 5.04545 5.08823 5.11362 5.22824 5.24815 5.29584 5.33226 5.44295 5.45978 5.53710 5.57909 5.67571 5.70342 5.81729 5.90938 5.96509 6.02872 6.07146 6.11870 6.12979 6.25296 6.33029 6.43142 6.50747 6.58106 6.64744 6.87469 6.89805 6.94141 7.05318 7.35138 7.61926 7.68071 8.16323 8.38562 9.50229 10.07381 10.42500 11.42011 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.002722 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.822006 B =10284.682384 C =11188.440797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.105 3.895 3 N -0.444 5.444 4 C 0.138 3.862 5 C -0.105 4.105 6 C 0.025 3.975 7 C 0.575 3.425 8 O -0.527 6.527 9 N -0.679 5.679 10 C 0.126 3.874 11 H 0.099 0.901 12 C -0.174 4.174 13 C 0.192 3.808 14 H 0.076 0.924 15 N -0.707 5.707 16 C -0.243 4.243 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.109 4.109 28 N -0.405 5.405 29 C 0.069 3.931 30 C -0.103 4.103 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.410 0.590 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.387 0.613 41 H 0.256 0.744 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.334 11.115 6.561 24.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.037 4.037 3 N -0.160 5.160 4 C -0.002 4.002 5 C -0.163 4.163 6 C -0.116 4.116 7 C 0.359 3.641 8 O -0.404 6.404 9 N -0.328 5.328 10 C 0.021 3.979 11 H 0.117 0.883 12 C -0.216 4.216 13 C 0.079 3.921 14 H 0.094 0.906 15 N -0.346 5.346 16 C -0.374 4.374 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.123 4.123 25 C -0.163 4.163 26 C -0.168 4.168 27 C -0.147 4.147 28 N -0.122 5.122 29 C -0.075 4.075 30 C -0.161 4.161 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.246 0.754 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.223 0.777 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.827 11.672 6.361 24.708 hybrid contribution 0.022 -1.168 -0.621 1.323 sum -20.805 10.505 5.740 24.003 Atomic orbital electron populations 1.20844 0.87412 1.04293 1.03851 1.22419 0.98580 0.88936 0.93761 1.68310 1.07860 1.28819 1.10974 1.22356 0.89715 0.96706 0.91418 1.21057 1.00000 0.90499 1.04703 1.21999 0.95827 0.90157 1.03608 1.17548 0.84763 0.84428 0.77342 1.90737 1.68402 1.30941 1.50351 1.45456 1.07064 1.08983 1.71255 1.21817 0.78133 0.99116 0.98825 0.88349 1.24280 1.00668 1.00650 0.95982 1.21282 0.92025 0.89254 0.89526 0.90585 1.42392 1.07054 1.31034 1.54084 1.19282 0.95404 1.03446 1.19310 0.91190 1.24734 0.95714 0.99618 1.00643 1.69645 0.99900 1.41332 1.47037 0.86214 0.77025 0.82511 0.80564 1.21736 1.21799 1.20771 1.23590 0.97503 0.96026 0.95213 1.22638 0.96895 0.99892 0.96907 1.22742 0.95915 0.99852 0.98308 1.22450 0.96829 0.98256 0.97148 1.68164 1.08614 1.28588 1.06805 1.22116 0.90035 0.96963 0.98351 1.20789 0.99268 0.92198 1.03827 0.89489 0.89539 0.89919 0.89464 0.91090 0.87369 0.75420 0.89412 0.92264 0.77687 0.93451 0.91695 0.91058 0.92502 0.89151 0.90754 0.90227 0.89708 0.89775 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 9.78 36.00 0.35 -0.23 16 2 C 0.11 1.02 6.79 -82.28 -0.56 0.46 16 3 N -0.44 -5.24 10.34 -5.24 -0.05 -5.29 16 4 C 0.14 1.75 6.82 -82.04 -0.56 1.19 16 5 C -0.11 -1.18 8.88 36.01 0.32 -0.86 16 6 C 0.03 0.34 6.75 -82.84 -0.56 -0.22 16 7 C 0.58 8.47 7.75 -12.19 -0.09 8.37 16 8 O -0.53 -8.55 12.93 5.35 0.07 -8.48 16 9 N -0.68 -9.72 5.04 -54.22 -0.27 -9.99 16 10 C 0.13 1.97 4.12 -67.48 -0.28 1.69 16 11 H 0.10 1.58 7.47 -51.93 -0.39 1.19 16 12 C -0.17 -3.10 7.68 -25.75 -0.20 -3.30 16 13 C 0.19 3.69 4.27 -67.49 -0.29 3.40 16 14 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 15 N -0.71 -16.98 5.32 -53.00 -0.28 -17.26 16 16 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 20 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.12 -1.94 0.92 -154.72 -0.14 -2.08 16 25 C -0.13 -1.83 7.49 -26.28 -0.20 -2.03 16 26 C -0.13 -2.03 8.08 -25.75 -0.21 -2.24 16 27 C -0.11 -1.74 7.47 -26.28 -0.20 -1.93 16 28 N -0.40 -5.04 9.65 -5.89 -0.06 -5.10 16 29 C 0.07 0.69 6.79 -82.43 -0.56 0.13 16 30 C -0.10 -0.65 9.78 36.00 0.35 -0.30 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.28 5.94 -51.93 -0.31 -0.03 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.11 1.32 5.84 -51.93 -0.30 1.01 16 37 H 0.41 5.59 7.98 -40.82 -0.33 5.27 16 38 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.39 9.82 5.92 -40.82 -0.24 9.58 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.08 1.45 6.42 -51.93 -0.33 1.12 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.08 0.31 5.94 -51.93 -0.31 0.00 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -31.27 401.66 -9.58 -40.84 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -7.67 Total: 13.96 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -3.06 Total: -5.06 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: 0.06 Total: -64.38 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.07 Total: -8.48 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.27 -9.58 -40.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078675147.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.654 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds