Wall clock time and date at job start Wed Apr 1 2020 04:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32137 * 119.90071 * 2 1 4 4 C 1.32077 * 120.07392 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.06621 * 179.97438 * 4 3 2 6 6 C 1.39441 * 119.86990 * 0.02562 * 4 3 2 7 7 C 1.48150 * 120.09617 * 180.02562 * 6 4 3 8 8 O 1.21523 * 120.00335 * 354.21164 * 7 6 4 9 9 N 1.34777 * 120.00372 * 174.21468 * 7 6 4 10 10 C 1.46496 * 120.00361 * 180.02562 * 9 7 6 11 11 H 1.09004 * 112.95232 * 23.59004 * 10 9 7 12 12 C 1.53954 * 113.66187 * 252.18517 * 10 9 7 13 13 C 1.53941 * 87.29359 * 270.26370 * 12 10 9 14 14 H 1.08995 * 113.66714 * 89.73440 * 13 12 10 15 15 N 1.46507 * 113.66451 * 220.79215 * 13 12 10 16 16 C 1.36933 * 119.99827 * 252.19188 * 15 13 12 17 17 H 1.07996 * 120.00384 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99622 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00490 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99944 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47247 * 89.99893 * 20 18 16 22 22 H 1.48496 * 109.47600 * 210.00120 * 20 18 16 23 23 H 1.48507 * 109.47331 * 330.00358 * 20 18 16 24 24 C 1.52905 * 86.78487 * 335.26141 * 13 12 10 25 25 C 1.52910 * 121.13930 * 150.62433 * 24 13 12 26 26 C 1.53953 * 86.78085 * 100.81897 * 25 24 13 27 27 C 1.52908 * 121.13801 * 259.18783 * 24 13 12 28 28 N 1.33002 * 119.80693 * 0.27038 * 6 4 3 29 29 C 1.31798 * 119.92661 * 359.45656 * 28 6 4 30 30 C 1.50691 * 119.93658 * 180.25263 * 29 28 6 31 31 H 1.08998 * 109.47558 * 90.00121 * 1 2 3 32 32 H 1.09006 * 109.46880 * 209.99838 * 1 2 3 33 33 H 1.09002 * 109.47553 * 329.99627 * 1 2 3 34 34 H 1.08992 * 109.47103 * 263.31120 * 5 4 3 35 35 H 1.09001 * 109.46923 * 23.31339 * 5 4 3 36 36 H 1.09002 * 109.46804 * 143.30601 * 5 4 3 37 37 H 0.96994 * 119.99715 * 359.97438 * 9 7 6 38 38 H 1.09003 * 113.58386 * 155.65796 * 12 10 9 39 39 H 1.09002 * 113.57981 * 24.86473 * 12 10 9 40 40 H 0.96995 * 119.99730 * 72.18177 * 15 13 12 41 41 H 0.96991 * 120.00566 * 179.97438 * 19 18 16 42 42 H 1.08999 * 113.66345 * 346.34777 * 25 24 13 43 43 H 1.09003 * 113.66217 * 215.28544 * 25 24 13 44 44 H 1.09006 * 113.57533 * 139.33579 * 26 25 24 45 45 H 1.08990 * 113.57840 * 270.12872 * 26 25 24 46 46 H 1.09000 * 113.66595 * 144.70712 * 27 24 13 47 47 H 1.09002 * 113.66104 * 13.65168 * 27 24 13 48 48 H 1.09002 * 109.47003 * 270.29521 * 30 29 28 49 49 H 1.09003 * 109.47516 * 30.29418 * 30 29 28 50 50 H 1.09006 * 109.47374 * 150.29769 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4864 1.1495 0.0005 5 6 4.2375 2.4560 -0.0001 6 6 4.1846 -0.0576 0.0005 7 6 5.6660 -0.0590 0.0017 8 8 6.2748 0.9875 -0.1035 9 7 6.3388 -1.2209 0.1193 10 6 7.8038 -1.2222 0.1210 11 1 8.2294 -0.2671 0.4291 12 6 8.4227 -1.7864 -1.1708 13 6 8.3850 -3.1703 -0.4978 14 1 7.4584 -3.7169 -0.6728 15 7 9.5810 -3.9787 -0.7480 16 6 9.5138 -5.0596 -1.5861 17 1 8.5791 -5.3164 -2.0622 18 6 10.6471 -5.8251 -1.8236 19 7 11.7864 -5.5119 -1.2438 20 14 10.5553 -7.3000 -2.9662 21 1 10.8579 -6.8699 -4.3550 22 1 11.5449 -8.3208 -2.5374 23 1 9.1900 -7.8819 -2.9147 24 6 8.4157 -2.4263 0.8377 25 6 7.7632 -3.0180 2.0876 26 6 9.1790 -3.4394 2.5214 27 6 9.7107 -2.2948 1.6399 28 7 3.5165 -1.2077 -0.0055 29 6 2.1986 -1.2026 -0.0005 30 6 1.4415 -2.5055 -0.0015 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 4.5227 2.7106 -1.0207 35 1 3.6002 3.2416 0.4059 36 1 5.1327 2.3607 0.6144 37 1 5.8530 -2.0561 0.2036 38 1 9.4319 -1.4235 -1.3656 39 1 7.7685 -1.7058 -2.0390 40 1 10.4204 -3.7481 -0.3202 41 1 12.5781 -6.0470 -1.4094 42 1 7.1011 -3.8584 1.8794 43 1 7.3100 -2.2712 2.7397 44 1 9.3700 -3.2955 3.5850 45 1 9.4659 -4.4302 2.1696 46 1 9.8049 -1.3448 2.1661 47 1 10.6045 -2.5575 1.0740 48 1 1.2597 -2.8193 -1.0294 49 1 2.0281 -3.2670 0.5125 50 1 0.4890 -2.3728 0.5117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078675147.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:32 Heat of formation + Delta-G solvation = 45.660746 kcal Electronic energy + Delta-G solvation = -30474.565277 eV Core-core repulsion = 26502.728636 eV Total energy + Delta-G solvation = -3971.836641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.64787 -41.83705 -40.06011 -36.53848 -36.17836 -35.68149 -35.37211 -33.77964 -31.78452 -31.14806 -29.84244 -27.50742 -26.70495 -26.41587 -25.52084 -24.70412 -24.05452 -23.07324 -22.07564 -21.34277 -19.65132 -19.54060 -19.01098 -18.10123 -17.32216 -16.92371 -16.68148 -16.37077 -16.28000 -16.08581 -15.74212 -15.49216 -15.18861 -14.59522 -14.44505 -14.23618 -13.99351 -13.93311 -13.74892 -13.70055 -13.46319 -13.40202 -13.27536 -13.18874 -13.13924 -12.87453 -12.82982 -12.78788 -12.48835 -12.47049 -12.16303 -11.93126 -11.88483 -11.85251 -11.33460 -11.25505 -11.08811 -10.91388 -10.70366 -10.20700 -10.12079 -9.82211 -8.95972 -7.93533 -5.20959 -0.74466 -0.10069 1.47138 1.48167 1.54136 1.56348 1.85779 2.54207 2.56392 2.78549 2.89875 3.22913 3.37064 3.45787 3.52207 3.68660 3.75343 3.81701 3.91132 3.97779 4.01379 4.11002 4.16269 4.25066 4.54485 4.55980 4.61409 4.66026 4.69315 4.72804 4.76246 4.79354 4.83448 4.86635 4.88123 4.97957 4.98962 5.06003 5.08590 5.11898 5.15653 5.21074 5.29821 5.47970 5.48701 5.56786 5.60528 5.64755 6.04990 6.28403 6.36448 6.62344 7.02204 7.35736 8.11968 8.36399 9.29493 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.002722 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.822006 B =10284.682384 C =11188.440797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.111 3.889 3 N -0.459 5.459 4 C 0.126 3.874 5 C -0.099 4.099 6 C 0.000 4.000 7 C 0.576 3.424 8 O -0.547 6.547 9 N -0.675 5.675 10 C 0.146 3.854 11 H 0.100 0.900 12 C -0.171 4.171 13 C 0.179 3.821 14 H 0.075 0.925 15 N -0.718 5.718 16 C -0.242 4.242 17 H 0.074 0.926 18 C -0.072 4.072 19 N -0.967 5.967 20 Si 0.968 3.032 21 H -0.291 1.291 22 H -0.296 1.296 23 H -0.269 1.269 24 C -0.113 4.113 25 C -0.111 4.111 26 C -0.129 4.129 27 C -0.109 4.109 28 N -0.421 5.421 29 C 0.065 3.935 30 C -0.102 4.102 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.378 0.622 41 H 0.250 0.750 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.100 0.900 47 H 0.051 0.949 48 H 0.096 0.904 49 H 0.079 0.921 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.773 11.139 7.271 28.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.033 4.033 3 N -0.175 5.175 4 C -0.013 4.013 5 C -0.156 4.156 6 C -0.139 4.139 7 C 0.361 3.639 8 O -0.425 6.425 9 N -0.324 5.324 10 C 0.041 3.959 11 H 0.118 0.882 12 C -0.213 4.213 13 C 0.069 3.931 14 H 0.093 0.907 15 N -0.356 5.356 16 C -0.374 4.374 17 H 0.092 0.908 18 C -0.265 4.265 19 N -0.618 5.618 20 Si 0.798 3.202 21 H -0.218 1.218 22 H -0.223 1.223 23 H -0.194 1.194 24 C -0.115 4.115 25 C -0.148 4.148 26 C -0.166 4.166 27 C -0.147 4.147 28 N -0.138 5.138 29 C -0.080 4.080 30 C -0.159 4.159 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.251 0.749 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.212 0.788 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.118 0.882 47 H 0.069 0.931 48 H 0.114 0.886 49 H 0.098 0.902 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -24.305 11.729 7.074 27.899 hybrid contribution 0.904 -1.138 -0.853 1.685 sum -23.401 10.591 6.222 26.429 Atomic orbital electron populations 1.21045 0.84106 1.05855 1.05241 1.23189 1.00610 0.88206 0.91263 1.68394 1.07351 1.29980 1.11790 1.22484 0.90359 0.96756 0.91667 1.20970 0.99684 0.90663 1.04322 1.21741 0.94939 0.91013 1.06211 1.17793 0.85568 0.83978 0.76547 1.90724 1.69130 1.31533 1.51155 1.45353 1.06285 1.09295 1.71464 1.21513 0.78968 0.98764 0.96697 0.88222 1.24133 1.00212 0.99898 0.97026 1.21519 0.90260 0.89168 0.92157 0.90694 1.42514 1.08165 1.31099 1.53854 1.19652 0.95318 1.03683 1.18697 0.90817 1.25483 0.95611 1.02578 1.02780 1.69798 1.00386 1.42588 1.48980 0.85217 0.77277 0.79334 0.78399 1.21823 1.22314 1.19391 1.23363 0.98334 0.95277 0.94526 1.22600 0.96295 1.00175 0.95775 1.22646 0.96538 0.97877 0.99559 1.22499 0.95382 0.99672 0.97109 1.68148 1.10006 1.28245 1.07431 1.22814 0.89404 0.98788 0.96958 1.20957 1.00034 0.90001 1.04919 0.87877 0.86690 0.89655 0.89753 0.89666 0.88607 0.74931 0.90734 0.92702 0.78771 0.94088 0.91631 0.88773 0.90039 0.92393 0.88189 0.93076 0.88567 0.90212 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.78 71.24 0.70 -0.04 16 2 C 0.11 1.86 6.79 42.63 0.29 2.15 16 3 N -0.46 -10.15 10.34 -170.48 -1.76 -11.91 16 4 C 0.13 3.12 6.82 42.81 0.29 3.41 16 5 C -0.10 -2.20 8.88 71.24 0.63 -1.57 16 6 C 0.00 0.01 6.75 41.89 0.28 0.29 16 7 C 0.58 16.85 7.75 86.88 0.67 17.53 16 8 O -0.55 -17.83 12.93 -3.79 -0.05 -17.88 16 9 N -0.68 -18.94 5.04 -443.73 -2.23 -21.17 16 10 C 0.15 4.50 4.12 45.28 0.19 4.69 16 11 H 0.10 3.13 7.47 -2.39 -0.02 3.11 16 12 C -0.17 -6.21 7.68 31.23 0.24 -5.97 16 13 C 0.18 6.99 4.27 45.28 0.19 7.19 16 14 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 15 N -0.72 -35.46 5.32 -321.58 -1.71 -37.17 16 16 C -0.24 -13.26 9.97 84.03 0.84 -12.42 16 17 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 18 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 19 N -0.97 -58.74 13.06 21.65 0.28 -58.45 16 20 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 C -0.11 -3.57 0.92 -52.32 -0.05 -3.61 16 25 C -0.11 -3.04 7.49 30.89 0.23 -2.81 16 26 C -0.13 -3.89 8.08 31.23 0.25 -3.64 16 27 C -0.11 -3.43 7.47 30.88 0.23 -3.20 16 28 N -0.42 -9.99 9.65 -172.54 -1.67 -11.65 16 29 C 0.07 1.16 6.79 42.68 0.29 1.45 16 30 C -0.10 -0.94 9.78 71.23 0.70 -0.24 16 31 H 0.10 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.11 0.16 5.94 -2.38 -0.01 0.14 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 2.37 5.84 -2.39 -0.01 2.36 16 37 H 0.41 10.97 7.98 -92.71 -0.74 10.23 16 38 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.38 19.98 5.92 -92.71 -0.55 19.44 16 41 H 0.25 14.81 8.31 -92.72 -0.77 14.04 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 47 H 0.05 1.92 6.42 -2.39 -0.02 1.91 16 48 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.12 0.31 5.94 -2.38 -0.01 0.29 16 Total: -1.00 -69.57 401.66 1.02 -68.55 By element: Atomic # 1 Polarization: 42.37 SS G_CDS: -0.31 Total: 42.06 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 6.44 Total: -0.45 kcal Atomic # 7 Polarization: -133.27 SS G_CDS: -7.09 Total: -140.36 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.05 Total: -17.88 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -69.57 1.02 -68.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078675147.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.207 kcal (2) G-P(sol) polarization free energy of solvation -69.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds