Wall clock time and date at job start Wed Apr 1 2020 03:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32156 * 120.53939 * 2 1 4 4 C 1.31861 * 120.96767 * 180.31267 * 3 2 1 5 5 N 1.31886 * 122.09472 * 359.64984 * 4 3 2 6 6 C 1.32130 * 120.96219 * 0.02990 * 5 4 3 7 7 C 1.39932 * 120.53615 * 179.68988 * 2 1 3 8 8 C 1.47836 * 120.93966 * 0.02562 * 7 2 1 9 9 O 1.21556 * 119.99875 * 312.80382 * 8 7 2 10 10 N 1.34767 * 120.00069 * 132.80412 * 8 7 2 11 11 C 1.47176 * 125.66450 * 4.51766 * 10 8 7 12 12 C 1.53695 * 107.11096 * 178.47262 * 11 10 8 13 13 C 1.54512 * 103.64736 * 338.46095 * 12 11 10 14 14 C 1.47488 * 125.66079 * 184.49869 * 10 8 7 15 15 H 1.09002 * 110.35436 * 85.07742 * 14 10 8 16 16 C 1.52997 * 110.35402 * 322.89342 * 14 10 8 17 17 C 1.52273 * 110.63667 * 96.57246 * 12 11 10 18 18 C 1.53312 * 109.42243 * 63.78234 * 17 12 11 19 19 N 1.46926 * 108.71144 * 53.50693 * 18 17 12 20 20 C 1.36935 * 120.56584 * 125.74336 * 19 18 17 21 21 H 1.08008 * 119.99840 * 330.87664 * 20 19 18 22 22 C 1.38812 * 120.00271 * 150.86631 * 20 19 18 23 23 N 1.31620 * 119.99677 * 339.57300 * 22 20 19 24 24 Si 1.86800 * 119.99912 * 159.56619 * 22 20 19 25 25 H 1.48503 * 109.46959 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47151 * 300.00102 * 24 22 20 27 27 H 1.48500 * 109.46912 * 60.00830 * 24 22 20 28 28 C 1.46930 * 118.87388 * 306.02273 * 19 18 17 29 29 C 1.52273 * 110.62927 * 220.34822 * 12 11 10 30 30 H 1.09001 * 109.46961 * 268.57908 * 1 2 3 31 31 H 1.09000 * 109.46692 * 28.57342 * 1 2 3 32 32 H 1.09001 * 109.47178 * 148.57748 * 1 2 3 33 33 H 1.08000 * 118.95382 * 179.68163 * 4 3 2 34 34 H 1.08011 * 120.53352 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.90425 * 59.10443 * 11 10 8 36 36 H 1.09001 * 110.06593 * 297.93134 * 11 10 8 37 37 H 1.09006 * 111.01107 * 152.88263 * 13 12 11 38 38 H 1.08996 * 111.01479 * 276.75261 * 13 12 11 39 39 H 1.09002 * 109.47161 * 61.45431 * 16 14 10 40 40 H 1.08995 * 109.47049 * 181.45229 * 16 14 10 41 41 H 1.08997 * 109.47229 * 301.45479 * 16 14 10 42 42 H 1.09001 * 109.48353 * 303.79831 * 17 12 11 43 43 H 1.09007 * 109.48054 * 183.76314 * 17 12 11 44 44 H 1.09007 * 109.59536 * 293.73820 * 18 17 12 45 45 H 1.09006 * 109.72945 * 173.35584 * 18 17 12 46 46 H 0.97003 * 119.99857 * 179.97438 * 23 22 20 47 47 H 1.08993 * 109.60131 * 173.74723 * 28 19 18 48 48 H 1.09004 * 109.59547 * 294.21644 * 28 19 18 49 49 H 1.09007 * 109.47602 * 56.20882 * 29 12 11 50 50 H 1.09001 * 109.48215 * 176.23353 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1382 0.0000 4 6 3.4971 1.1481 -0.0062 5 7 4.2062 0.0361 -0.0058 6 6 3.6164 -1.1462 0.0003 7 6 2.2180 -1.2052 0.0065 8 6 1.5120 -2.5041 0.0130 9 8 0.5930 -2.6925 0.7860 10 7 1.8874 -3.4793 -0.8381 11 6 3.0360 -3.4216 -1.7565 12 6 3.0928 -4.7684 -2.4948 13 6 2.3080 -5.7249 -1.5693 14 6 1.2155 -4.7818 -1.0036 15 1 0.3868 -4.6944 -1.7063 16 6 0.7145 -5.2975 0.3469 17 6 2.4061 -4.6668 -3.8501 18 6 3.1680 -3.6728 -4.7344 19 7 4.5819 -4.0697 -4.7797 20 6 5.2112 -4.2687 -5.9794 21 1 4.6452 -4.5992 -6.8379 22 6 6.5766 -4.0455 -6.0924 23 7 7.1935 -3.2825 -5.2151 24 14 7.5385 -4.8280 -7.4895 25 1 8.9674 -4.4373 -7.3864 26 1 7.4225 -6.3060 -7.4033 27 1 6.9903 -4.3633 -8.7890 28 6 5.3074 -4.2556 -3.5156 29 6 4.5332 -5.2406 -2.6394 30 1 -0.3633 -0.0255 1.0274 31 1 -0.3633 0.9025 -0.4915 32 1 -0.3633 -0.8770 -0.5358 33 1 4.0128 2.0970 -0.0112 34 1 4.2039 -2.0526 0.0011 35 1 3.9555 -3.2689 -1.1915 36 1 2.9017 -2.6110 -2.4728 37 1 1.8631 -6.5415 -2.1380 38 1 2.9451 -6.1076 -0.7720 39 1 -0.0125 -4.5963 0.7567 40 1 0.2439 -6.2713 0.2121 41 1 1.5552 -5.3923 1.0342 42 1 1.3816 -4.3207 -3.7136 43 1 2.3984 -5.6465 -4.3280 44 1 3.0829 -2.6704 -4.3147 45 1 2.7527 -3.6836 -5.7422 46 1 8.1477 -3.1267 -5.2939 47 1 6.3015 -4.6532 -3.7196 48 1 5.3925 -3.2996 -2.9989 49 1 4.9980 -5.2963 -1.6549 50 1 4.5477 -6.2262 -3.1046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086905684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:02 Heat of formation + Delta-G solvation = 39.774850 kcal Electronic energy + Delta-G solvation = -31958.012373 eV Core-core repulsion = 27985.920501 eV Total energy + Delta-G solvation = -3972.091872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.52612 -40.38755 -38.54346 -36.09848 -34.58039 -33.36652 -33.11744 -31.48849 -30.96933 -30.05210 -28.78939 -27.31581 -26.17561 -25.09777 -24.24238 -23.27338 -22.62759 -21.90285 -20.85199 -19.59278 -18.42772 -17.95409 -17.13127 -17.01021 -16.79040 -16.17593 -15.21232 -15.12984 -14.84709 -14.44504 -14.29093 -14.05133 -13.79958 -13.62857 -13.39107 -13.29822 -13.16196 -13.14354 -12.86993 -12.63350 -12.48928 -12.21207 -11.97156 -11.83028 -11.72459 -11.49727 -11.32961 -11.18986 -10.95301 -10.76181 -10.73702 -10.52850 -10.34563 -10.27028 -9.95253 -9.79346 -9.63450 -9.57107 -9.44742 -9.42554 -8.66837 -8.49551 -6.71374 -5.84942 -3.26430 0.39846 0.86144 2.50765 2.82725 3.35266 3.41931 3.42925 3.57187 3.81397 3.96399 4.17006 4.23201 4.45797 4.57500 4.70200 4.79734 4.89714 5.08601 5.17195 5.21014 5.25023 5.32348 5.33372 5.39798 5.50313 5.54538 5.56308 5.66920 5.69737 5.78115 5.82025 5.87482 5.94482 5.99760 6.11443 6.13678 6.14715 6.21073 6.39675 6.44520 6.50440 6.55130 6.61866 6.72459 6.74158 6.87064 7.23095 7.39172 7.52437 7.76435 7.85250 7.98669 8.39810 9.15486 9.79155 10.36455 11.23577 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.003728 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.436889 B = 7508.060456 C = 9017.624629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.224 3.776 3 N -0.524 5.524 4 C 0.314 3.686 5 N -0.519 5.519 6 C 0.187 3.813 7 C -0.236 4.236 8 C 0.588 3.412 9 O -0.530 6.530 10 N -0.604 5.604 11 C 0.103 3.897 12 C -0.053 4.053 13 C -0.124 4.124 14 C 0.136 3.864 15 H 0.077 0.923 16 C -0.164 4.164 17 C -0.120 4.120 18 C 0.144 3.856 19 N -0.588 5.588 20 C -0.260 4.260 21 H 0.064 0.936 22 C 0.008 3.992 23 N -0.897 5.897 24 Si 0.898 3.102 25 H -0.290 1.290 26 H -0.284 1.284 27 H -0.282 1.282 28 C 0.172 3.828 29 C -0.127 4.127 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.201 0.799 34 H 0.174 0.826 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.015 0.985 45 H 0.055 0.945 46 H 0.255 0.745 47 H 0.082 0.918 48 H 0.018 0.982 49 H 0.052 0.948 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.469 0.811 11.506 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.077 3.923 3 N -0.239 5.239 4 C 0.027 3.973 5 N -0.232 5.232 6 C 0.020 3.980 7 C -0.244 4.244 8 C 0.375 3.625 9 O -0.408 6.408 10 N -0.337 5.337 11 C -0.019 4.019 12 C -0.054 4.054 13 C -0.162 4.162 14 C 0.034 3.966 15 H 0.095 0.905 16 C -0.221 4.221 17 C -0.159 4.159 18 C 0.018 3.982 19 N -0.311 5.311 20 C -0.389 4.389 21 H 0.081 0.919 22 C -0.191 4.191 23 N -0.540 5.540 24 Si 0.727 3.273 25 H -0.216 1.216 26 H -0.210 1.210 27 H -0.209 1.209 28 C 0.046 3.954 29 C -0.167 4.167 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.218 0.782 34 H 0.191 0.809 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.100 0.900 48 H 0.036 0.964 49 H 0.070 0.930 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.311 1.722 11.946 16.541 hybrid contribution 0.480 -1.099 -0.813 1.449 sum -10.830 0.624 11.133 15.544 Atomic orbital electron populations 1.20830 0.87082 1.03930 1.04360 1.21806 0.97763 0.86601 0.86125 1.68363 1.10419 1.29452 1.15620 1.25218 0.86625 0.97398 0.88079 1.68501 1.41310 0.98874 1.14530 1.23638 0.90680 0.96897 0.86753 1.21585 0.96604 0.95986 1.10204 1.17353 0.82940 0.82220 0.79995 1.90723 1.30137 1.80794 1.39115 1.48613 1.30529 1.15885 1.38653 1.22450 0.87669 0.99955 0.91806 1.20934 0.97355 0.92377 0.94697 1.23000 0.96711 0.97330 0.99137 1.21991 0.95172 0.81790 0.97635 0.90517 1.22201 1.02481 1.01446 0.95994 1.21937 0.97596 1.01688 0.94692 1.20948 0.86430 0.93711 0.97110 1.43971 1.05894 1.78830 1.02359 1.19085 0.91425 1.39165 0.89232 0.91873 1.25021 0.98310 0.97840 0.97955 1.70063 1.09583 1.36358 1.37975 0.86448 0.79108 0.79536 0.82158 1.21636 1.21004 1.20865 1.20661 0.95662 0.94227 0.84875 1.22056 0.93137 1.01520 0.99967 0.88821 0.89852 0.89960 0.78208 0.80907 0.91195 0.90460 0.89843 0.90603 0.89597 0.92211 0.92750 0.93083 0.91634 0.96733 0.92664 0.93537 0.90010 0.96379 0.92954 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 9.22 36.01 0.33 -0.78 16 2 C 0.22 2.90 6.86 -81.82 -0.56 2.34 16 3 N -0.52 -6.76 10.36 -10.48 -0.11 -6.87 16 4 C 0.31 3.81 12.27 -92.02 -1.13 2.68 16 5 N -0.52 -7.15 10.42 -14.24 -0.15 -7.30 16 6 C 0.19 2.50 9.82 -16.78 -0.16 2.34 16 7 C -0.24 -3.18 5.44 -104.69 -0.57 -3.75 16 8 C 0.59 8.12 6.46 -12.34 -0.08 8.04 16 9 O -0.53 -8.02 13.28 5.32 0.07 -7.95 16 10 N -0.60 -7.90 3.25 -164.31 -0.53 -8.43 16 11 C 0.10 1.45 3.95 -3.31 -0.01 1.43 16 12 C -0.05 -0.75 0.53 -154.10 -0.08 -0.83 16 13 C -0.12 -1.44 5.41 -24.87 -0.13 -1.57 16 14 C 0.14 1.61 3.46 -66.33 -0.23 1.38 16 15 H 0.08 0.89 7.76 -51.93 -0.40 0.49 16 16 C -0.16 -1.83 8.65 37.16 0.32 -1.51 16 17 C -0.12 -1.84 4.78 -26.94 -0.13 -1.97 16 18 C 0.14 2.80 6.22 -3.65 -0.02 2.78 16 19 N -0.59 -13.69 2.98 -172.43 -0.51 -14.20 16 20 C -0.26 -6.82 9.53 -15.06 -0.14 -6.96 16 21 H 0.06 1.64 7.91 -52.48 -0.42 1.23 16 22 C 0.01 0.22 4.80 -17.43 -0.08 0.14 16 23 N -0.90 -25.16 11.51 55.49 0.64 -24.52 16 24 Si 0.90 21.04 29.60 -169.99 -5.03 16.01 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.17 3.71 5.04 -3.87 -0.02 3.69 16 29 C -0.13 -2.10 4.69 -27.16 -0.13 -2.23 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.91 6.92 -51.93 -0.36 0.55 16 33 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.17 2.11 5.95 -52.48 -0.31 1.80 16 35 H 0.07 0.97 5.29 -51.93 -0.27 0.70 16 36 H 0.08 1.22 6.07 -51.93 -0.32 0.91 16 37 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 38 H 0.08 0.86 7.92 -51.93 -0.41 0.44 16 39 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.70 7.49 -51.93 -0.39 0.31 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.01 0.30 6.53 -51.92 -0.34 -0.04 16 45 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.08 2.03 6.24 -51.93 -0.32 1.71 16 48 H 0.02 0.41 7.47 -51.93 -0.39 0.02 16 49 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -30.07 380.57 -10.31 -40.37 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.58 Total: 1.94 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -2.84 Total: 5.21 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.67 Total: -61.32 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.07 Total: -7.95 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.07 -10.31 -40.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086905684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.149 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds