Wall clock time and date at job start Wed Apr 1 2020 03:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32156 * 120.53939 * 2 1 4 4 C 1.31861 * 120.96767 * 180.31267 * 3 2 1 5 5 N 1.31886 * 122.09472 * 359.64984 * 4 3 2 6 6 C 1.32130 * 120.96219 * 0.02990 * 5 4 3 7 7 C 1.39932 * 120.53615 * 179.68988 * 2 1 3 8 8 C 1.47836 * 120.93966 * 0.02562 * 7 2 1 9 9 O 1.21556 * 119.99875 * 312.80382 * 8 7 2 10 10 N 1.34767 * 120.00069 * 132.80412 * 8 7 2 11 11 C 1.47176 * 125.66450 * 4.51766 * 10 8 7 12 12 C 1.53695 * 107.11096 * 178.47262 * 11 10 8 13 13 C 1.54512 * 103.64736 * 338.46095 * 12 11 10 14 14 C 1.47488 * 125.66079 * 184.49869 * 10 8 7 15 15 H 1.09002 * 110.35436 * 85.07742 * 14 10 8 16 16 C 1.52997 * 110.35402 * 322.89342 * 14 10 8 17 17 C 1.52273 * 110.63667 * 96.57246 * 12 11 10 18 18 C 1.53312 * 109.42243 * 63.78234 * 17 12 11 19 19 N 1.46926 * 108.71144 * 53.50693 * 18 17 12 20 20 C 1.36935 * 120.56584 * 125.74336 * 19 18 17 21 21 H 1.08008 * 119.99840 * 330.87664 * 20 19 18 22 22 C 1.38812 * 120.00271 * 150.86631 * 20 19 18 23 23 N 1.31620 * 119.99677 * 339.57300 * 22 20 19 24 24 Si 1.86800 * 119.99912 * 159.56619 * 22 20 19 25 25 H 1.48503 * 109.46959 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47151 * 300.00102 * 24 22 20 27 27 H 1.48500 * 109.46912 * 60.00830 * 24 22 20 28 28 C 1.46930 * 118.87388 * 306.02273 * 19 18 17 29 29 C 1.52273 * 110.62927 * 220.34822 * 12 11 10 30 30 H 1.09001 * 109.46961 * 268.57908 * 1 2 3 31 31 H 1.09000 * 109.46692 * 28.57342 * 1 2 3 32 32 H 1.09001 * 109.47178 * 148.57748 * 1 2 3 33 33 H 1.08000 * 118.95382 * 179.68163 * 4 3 2 34 34 H 1.08011 * 120.53352 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.90425 * 59.10443 * 11 10 8 36 36 H 1.09001 * 110.06593 * 297.93134 * 11 10 8 37 37 H 1.09006 * 111.01107 * 152.88263 * 13 12 11 38 38 H 1.08996 * 111.01479 * 276.75261 * 13 12 11 39 39 H 1.09002 * 109.47161 * 61.45431 * 16 14 10 40 40 H 1.08995 * 109.47049 * 181.45229 * 16 14 10 41 41 H 1.08997 * 109.47229 * 301.45479 * 16 14 10 42 42 H 1.09001 * 109.48353 * 303.79831 * 17 12 11 43 43 H 1.09007 * 109.48054 * 183.76314 * 17 12 11 44 44 H 1.09007 * 109.59536 * 293.73820 * 18 17 12 45 45 H 1.09006 * 109.72945 * 173.35584 * 18 17 12 46 46 H 0.97003 * 119.99857 * 179.97438 * 23 22 20 47 47 H 1.08993 * 109.60131 * 173.74723 * 28 19 18 48 48 H 1.09004 * 109.59547 * 294.21644 * 28 19 18 49 49 H 1.09007 * 109.47602 * 56.20882 * 29 12 11 50 50 H 1.09001 * 109.48215 * 176.23353 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1382 0.0000 4 6 3.4971 1.1481 -0.0062 5 7 4.2062 0.0361 -0.0058 6 6 3.6164 -1.1462 0.0003 7 6 2.2180 -1.2052 0.0065 8 6 1.5120 -2.5041 0.0130 9 8 0.5930 -2.6925 0.7860 10 7 1.8874 -3.4793 -0.8381 11 6 3.0360 -3.4216 -1.7565 12 6 3.0928 -4.7684 -2.4948 13 6 2.3080 -5.7249 -1.5693 14 6 1.2155 -4.7818 -1.0036 15 1 0.3868 -4.6944 -1.7063 16 6 0.7145 -5.2975 0.3469 17 6 2.4061 -4.6668 -3.8501 18 6 3.1680 -3.6728 -4.7344 19 7 4.5819 -4.0697 -4.7797 20 6 5.2112 -4.2687 -5.9794 21 1 4.6452 -4.5992 -6.8379 22 6 6.5766 -4.0455 -6.0924 23 7 7.1935 -3.2825 -5.2151 24 14 7.5385 -4.8280 -7.4895 25 1 8.9674 -4.4373 -7.3864 26 1 7.4225 -6.3060 -7.4033 27 1 6.9903 -4.3633 -8.7890 28 6 5.3074 -4.2556 -3.5156 29 6 4.5332 -5.2406 -2.6394 30 1 -0.3633 -0.0255 1.0274 31 1 -0.3633 0.9025 -0.4915 32 1 -0.3633 -0.8770 -0.5358 33 1 4.0128 2.0970 -0.0112 34 1 4.2039 -2.0526 0.0011 35 1 3.9555 -3.2689 -1.1915 36 1 2.9017 -2.6110 -2.4728 37 1 1.8631 -6.5415 -2.1380 38 1 2.9451 -6.1076 -0.7720 39 1 -0.0125 -4.5963 0.7567 40 1 0.2439 -6.2713 0.2121 41 1 1.5552 -5.3923 1.0342 42 1 1.3816 -4.3207 -3.7136 43 1 2.3984 -5.6465 -4.3280 44 1 3.0829 -2.6704 -4.3147 45 1 2.7527 -3.6836 -5.7422 46 1 8.1477 -3.1267 -5.2939 47 1 6.3015 -4.6532 -3.7196 48 1 5.3925 -3.2996 -2.9989 49 1 4.9980 -5.2963 -1.6549 50 1 4.5477 -6.2262 -3.1046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086905684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:01 Heat of formation + Delta-G solvation = 23.406491 kcal Electronic energy + Delta-G solvation = -31958.722158 eV Core-core repulsion = 27985.920501 eV Total energy + Delta-G solvation = -3972.801658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.54863 -41.48784 -39.75462 -37.52847 -35.58280 -34.77924 -34.30542 -32.74740 -32.35177 -31.60513 -29.72351 -28.76162 -27.23597 -26.19777 -25.83135 -24.32324 -23.97711 -23.18915 -22.26274 -20.63490 -19.83927 -18.97960 -18.46013 -18.17165 -17.96061 -17.35566 -16.82352 -16.22974 -16.16350 -15.81188 -15.52893 -15.33542 -15.07767 -14.84996 -14.69133 -14.59417 -14.29569 -14.23849 -14.03098 -13.85512 -13.38198 -13.28979 -13.25894 -13.06779 -12.97520 -12.80519 -12.68521 -12.53124 -12.47391 -12.28225 -12.02195 -11.96971 -11.84071 -11.74265 -11.48004 -11.07281 -10.93812 -10.80082 -10.62778 -10.48383 -10.46425 -9.73180 -8.62631 -7.86416 -5.29989 -0.59823 -0.15288 1.44613 1.47747 1.50002 1.56408 1.79032 2.52965 2.57419 2.89553 3.01340 3.18893 3.20213 3.26693 3.47223 3.66607 3.70486 3.79434 3.83825 4.08871 4.21023 4.22071 4.28952 4.32228 4.43502 4.51884 4.57416 4.58183 4.62919 4.67698 4.72746 4.75577 4.82189 4.92170 4.93429 4.97046 5.05996 5.16409 5.21199 5.21872 5.25248 5.29097 5.36955 5.40601 5.53227 5.54514 5.68607 5.72999 5.78137 6.32686 6.41286 6.86266 6.92964 7.18013 7.89698 8.41205 9.19131 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.003728 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.436889 B = 7508.060456 C = 9017.624629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.216 3.784 3 N -0.531 5.531 4 C 0.312 3.688 5 N -0.540 5.540 6 C 0.181 3.819 7 C -0.249 4.249 8 C 0.591 3.409 9 O -0.543 6.543 10 N -0.601 5.601 11 C 0.112 3.888 12 C -0.051 4.051 13 C -0.110 4.110 14 C 0.133 3.867 15 H 0.085 0.915 16 C -0.156 4.156 17 C -0.106 4.106 18 C 0.141 3.859 19 N -0.605 5.605 20 C -0.266 4.266 21 H 0.062 0.938 22 C -0.042 4.042 23 N -0.929 5.929 24 Si 0.958 3.042 25 H -0.296 1.296 26 H -0.277 1.277 27 H -0.278 1.278 28 C 0.179 3.821 29 C -0.113 4.113 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.233 0.767 34 H 0.179 0.821 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.007 0.993 45 H 0.049 0.951 46 H 0.249 0.751 47 H 0.044 0.956 48 H -0.002 1.002 49 H 0.072 0.928 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.056 -0.385 12.009 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.070 3.930 3 N -0.246 5.246 4 C 0.026 3.974 5 N -0.254 5.254 6 C 0.015 3.985 7 C -0.257 4.257 8 C 0.379 3.621 9 O -0.422 6.422 10 N -0.333 5.333 11 C -0.010 4.010 12 C -0.051 4.051 13 C -0.148 4.148 14 C 0.032 3.968 15 H 0.103 0.897 16 C -0.213 4.213 17 C -0.145 4.145 18 C 0.015 3.985 19 N -0.328 5.328 20 C -0.397 4.397 21 H 0.080 0.920 22 C -0.238 4.238 23 N -0.574 5.574 24 Si 0.786 3.214 25 H -0.222 1.222 26 H -0.203 1.203 27 H -0.204 1.204 28 C 0.054 3.946 29 C -0.152 4.152 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.249 0.751 34 H 0.196 0.804 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.024 0.976 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.016 0.984 49 H 0.091 0.909 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.933 0.508 12.451 17.960 hybrid contribution 0.947 -0.638 -0.981 1.505 sum -11.987 -0.130 11.470 16.591 Atomic orbital electron populations 1.20854 0.85578 1.04400 1.04868 1.22222 0.98886 0.86524 0.85412 1.68453 1.10716 1.29365 1.16065 1.25889 0.86667 0.98157 0.86730 1.68541 1.41937 0.99416 1.15523 1.23767 0.90940 0.97200 0.86581 1.21639 0.96635 0.96258 1.11125 1.17346 0.82675 0.82311 0.79812 1.90721 1.30761 1.81058 1.39668 1.48606 1.30218 1.16402 1.38103 1.22239 0.88097 0.99174 0.91533 1.20836 0.96093 0.93339 0.94880 1.22943 0.96170 0.96974 0.98676 1.22159 0.95345 0.80979 0.98334 0.89723 1.22110 1.01870 1.02140 0.95186 1.21772 0.98091 1.00405 0.94213 1.21075 0.84905 0.94607 0.97867 1.44224 1.07308 1.79286 1.02031 1.19401 0.91846 1.38075 0.90333 0.91994 1.25695 0.99214 0.98611 1.00319 1.70202 1.09261 1.38058 1.39887 0.85493 0.77337 0.78806 0.79723 1.22237 1.20344 1.20378 1.20473 0.94741 0.94375 0.85058 1.21843 0.94086 0.99647 0.99648 0.88112 0.88464 0.90369 0.75105 0.80441 0.91293 0.92527 0.87833 0.89650 0.91280 0.89896 0.93285 0.90746 0.91301 0.97564 0.93262 0.94187 0.93761 0.98393 0.90939 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 9.22 71.24 0.66 -1.35 16 2 C 0.22 5.46 6.86 42.92 0.29 5.75 16 3 N -0.53 -13.27 10.36 -187.05 -1.94 -15.21 16 4 C 0.31 7.36 12.27 180.84 2.22 9.58 16 5 N -0.54 -14.85 10.42 -198.96 -2.07 -16.92 16 6 C 0.18 4.87 9.82 85.07 0.84 5.70 16 7 C -0.25 -6.61 5.44 -19.91 -0.11 -6.72 16 8 C 0.59 15.71 6.46 86.79 0.56 16.27 16 9 O -0.54 -15.80 13.28 -3.89 -0.05 -15.85 16 10 N -0.60 -14.70 3.25 -792.03 -2.57 -17.28 16 11 C 0.11 3.03 3.95 86.48 0.34 3.37 16 12 C -0.05 -1.34 0.53 -51.91 -0.03 -1.36 16 13 C -0.11 -2.14 5.41 31.80 0.17 -1.97 16 14 C 0.13 2.74 3.46 45.49 0.16 2.89 16 15 H 0.08 1.66 7.76 -2.39 -0.02 1.64 16 16 C -0.16 -3.02 8.65 71.98 0.62 -2.40 16 17 C -0.11 -3.03 4.78 30.46 0.15 -2.88 16 18 C 0.14 5.43 6.22 86.40 0.54 5.97 16 19 N -0.60 -28.52 2.98 -699.44 -2.08 -30.61 16 20 C -0.27 -14.17 9.53 84.03 0.80 -13.37 16 21 H 0.06 3.24 7.91 -2.91 -0.02 3.22 16 22 C -0.04 -2.29 4.80 84.86 0.41 -1.88 16 23 N -0.93 -53.77 11.51 21.65 0.25 -53.52 16 24 Si 0.96 43.86 29.60 68.60 2.03 45.89 16 25 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 C 0.18 7.90 5.04 86.26 0.43 8.34 16 29 C -0.11 -3.60 4.69 30.31 0.14 -3.45 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.64 6.92 -2.39 -0.02 1.62 16 33 H 0.23 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.18 4.38 5.95 -2.90 -0.02 4.37 16 35 H 0.07 1.89 5.29 -2.39 -0.01 1.87 16 36 H 0.06 1.79 6.07 -2.39 -0.01 1.77 16 37 H 0.10 1.70 8.01 -2.38 -0.02 1.68 16 38 H 0.08 1.58 7.92 -2.39 -0.02 1.56 16 39 H 0.07 1.62 5.88 -2.39 -0.01 1.61 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.81 7.49 -2.39 -0.02 1.80 16 43 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.01 0.26 6.53 -2.38 -0.02 0.25 16 45 H 0.05 1.92 7.93 -2.38 -0.02 1.90 16 46 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 47 H 0.04 2.27 6.24 -2.39 -0.01 2.26 16 48 H 0.00 -0.09 7.47 -2.39 -0.02 -0.11 16 49 H 0.07 2.02 8.10 -2.38 -0.02 2.00 16 50 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -66.01 380.57 2.71 -63.30 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.95 Total: 17.71 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 8.19 Total: 22.48 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -8.42 Total: -133.54 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.05 Total: -15.85 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -66.01 2.71 -63.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086905684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.709 kcal (2) G-P(sol) polarization free energy of solvation -66.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds