Wall clock time and date at job start Wed Apr 1 2020 03:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38827 * 120.41065 * 2 1 4 4 C 1.38781 * 118.50275 * 179.97438 * 3 2 1 5 5 N 1.32124 * 119.16427 * 0.02562 * 4 3 2 6 6 C 1.32442 * 120.77395 * 359.97438 * 5 4 3 7 7 C 1.48538 * 119.19091 * 179.97438 * 6 5 4 8 8 O 1.21462 * 120.00271 * 179.97438 * 7 6 5 9 9 N 1.34780 * 119.99540 * 0.02562 * 7 6 5 10 10 C 1.47568 * 125.62918 * 0.02562 * 9 7 6 11 11 C 1.54149 * 104.77744 * 156.65681 * 10 9 7 12 12 C 1.54371 * 102.47225 * 36.08685 * 11 10 9 13 13 C 1.47083 * 125.62577 * 179.97438 * 9 7 6 14 14 H 1.08996 * 109.87567 * 300.43989 * 13 9 7 15 15 C 1.53003 * 109.88071 * 61.44127 * 13 9 7 16 16 C 1.52099 * 110.64002 * 153.96571 * 11 10 9 17 17 C 1.53331 * 109.50538 * 182.82071 * 16 11 10 18 18 N 1.46929 * 108.70081 * 306.72437 * 17 16 11 19 19 C 1.36936 * 120.58682 * 234.39352 * 18 17 16 20 20 H 1.08003 * 120.00007 * 152.44187 * 19 18 17 21 21 C 1.38809 * 119.99769 * 332.45311 * 19 18 17 22 22 N 1.31628 * 120.00055 * 159.34468 * 21 19 18 23 23 Si 1.86805 * 120.00242 * 339.33861 * 21 19 18 24 24 H 1.48495 * 109.46776 * 93.29251 * 23 21 19 25 25 H 1.48492 * 109.47068 * 213.29746 * 23 21 19 26 26 H 1.48500 * 109.46777 * 333.29872 * 23 21 19 27 27 C 1.46947 * 118.83194 * 54.41800 * 18 17 16 28 28 C 1.52101 * 110.65466 * 278.20934 * 11 10 9 29 29 N 1.32088 * 120.42493 * 180.23427 * 2 1 3 30 30 H 1.09002 * 109.47374 * 90.00338 * 1 2 3 31 31 H 1.09004 * 109.46702 * 209.99979 * 1 2 3 32 32 H 1.08992 * 109.47940 * 329.99765 * 1 2 3 33 33 H 1.07996 * 120.75024 * 359.96041 * 3 2 1 34 34 H 1.07998 * 120.41693 * 180.02562 * 4 3 2 35 35 H 1.08996 * 110.37517 * 37.83584 * 10 9 7 36 36 H 1.08993 * 110.37900 * 275.47995 * 10 9 7 37 37 H 1.09001 * 110.73393 * 83.70336 * 12 11 10 38 38 H 1.09002 * 110.73123 * 207.01263 * 12 11 10 39 39 H 1.09005 * 109.47034 * 58.54155 * 15 13 9 40 40 H 1.08996 * 109.47411 * 178.54302 * 15 13 9 41 41 H 1.09000 * 109.46767 * 298.54521 * 15 13 9 42 42 H 1.09003 * 109.46805 * 62.80938 * 16 11 10 43 43 H 1.09004 * 109.47036 * 302.83260 * 16 11 10 44 44 H 1.09004 * 109.60006 * 66.49283 * 17 16 11 45 45 H 1.09002 * 109.60003 * 186.96031 * 17 16 11 46 46 H 0.96996 * 120.00108 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.59773 * 65.32989 * 27 18 17 48 48 H 1.09000 * 109.59913 * 185.80642 * 27 18 17 49 49 H 1.09005 * 109.46408 * 57.16086 * 28 11 10 50 50 H 1.08998 * 109.46551 * 297.18030 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2097 1.1973 0.0000 4 6 3.5968 1.1511 0.0005 5 7 4.2019 -0.0235 0.0005 6 6 3.5006 -1.1470 0.0005 7 6 4.2171 -2.4482 -0.0001 8 8 3.5887 -3.4876 0.0004 9 7 5.5646 -2.4754 -0.0001 10 6 6.4483 -1.2935 0.0010 11 6 7.7797 -1.7986 0.5912 12 6 7.8726 -3.2320 0.0256 13 6 6.3971 -3.6879 -0.0001 14 1 6.1787 -4.2874 0.8836 15 6 6.1245 -4.5062 -1.2639 16 6 8.9417 -0.9522 0.0946 17 6 10.2579 -1.5190 0.6399 18 7 10.1494 -1.6402 2.1002 19 6 11.0791 -1.0566 2.9188 20 1 10.8042 -0.7534 3.9183 21 6 12.3749 -0.8545 2.4640 22 7 13.1455 0.0390 3.0475 23 14 13.0253 -1.8506 1.0237 24 1 12.8050 -1.0987 -0.2377 25 1 14.4785 -2.0950 1.2070 26 1 12.3093 -3.1499 0.9570 27 6 9.0259 -2.3992 2.6667 28 6 7.7165 -1.8273 2.1106 29 7 2.1759 -1.1390 -0.0047 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3635 0.8898 0.5138 33 1 1.6888 2.1433 -0.0006 34 1 4.1743 2.0637 0.0010 35 1 6.0292 -0.5069 0.6285 36 1 6.5975 -0.9302 -1.0157 37 1 8.2919 -3.2234 -0.9805 38 1 8.4617 -3.8695 0.6849 39 1 6.3372 -3.8982 -2.1433 40 1 6.7631 -5.3894 -1.2697 41 1 5.0789 -4.8137 -1.2791 42 1 8.8174 0.0741 0.4402 43 1 8.9632 -0.9682 -0.9952 44 1 10.4415 -2.5011 0.2041 45 1 11.0778 -0.8460 0.3888 46 1 14.0510 0.1800 2.7299 47 1 9.1150 -3.4486 2.3859 48 1 9.0331 -2.3071 3.7528 49 1 6.8828 -2.4538 2.4277 50 1 7.5735 -0.8145 2.4874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086919862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:16 Heat of formation + Delta-G solvation = 32.134679 kcal Electronic energy + Delta-G solvation = -31418.687348 eV Core-core repulsion = 27446.264173 eV Total energy + Delta-G solvation = -3972.423175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.47454 -41.49562 -39.75991 -37.71911 -35.68868 -34.78174 -33.83528 -33.02098 -32.65935 -31.96750 -29.51349 -28.90171 -27.22788 -26.66900 -25.52818 -24.40805 -24.09027 -23.02830 -22.72426 -20.63391 -19.78386 -18.86436 -18.37719 -18.28398 -17.55553 -17.11810 -16.90466 -16.64379 -16.13374 -15.88576 -15.51516 -15.36331 -15.24048 -15.05128 -14.84179 -14.45942 -14.35376 -14.29998 -14.04885 -13.84412 -13.73197 -13.55832 -13.27732 -13.19896 -13.15465 -12.96502 -12.57138 -12.33756 -12.17429 -12.14955 -12.00597 -11.83101 -11.73556 -11.59722 -11.52196 -11.14667 -11.09039 -11.00606 -10.62270 -10.60300 -10.26972 -9.71999 -8.85285 -8.12177 -5.43054 -0.62700 0.02674 1.33571 1.45788 1.50919 1.53524 1.54902 2.45941 2.73152 2.77200 3.04241 3.11085 3.38436 3.49217 3.51881 3.56811 3.80203 3.83065 4.03514 4.11032 4.14190 4.25343 4.28598 4.41393 4.43664 4.56161 4.56788 4.58040 4.70228 4.70898 4.76974 4.80483 4.82942 4.83373 4.87142 4.94995 5.02574 5.06272 5.11637 5.20493 5.22744 5.24009 5.29829 5.34565 5.39298 5.44980 5.57895 5.90226 5.92030 6.17161 6.29801 6.72424 6.97713 7.02081 7.68358 8.08504 9.07993 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.003001 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.565928 B = 9327.232159 C =10233.259555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.151 3.849 3 C -0.186 4.186 4 C 0.136 3.864 5 N -0.502 5.502 6 C 0.266 3.734 7 C 0.589 3.411 8 O -0.551 6.551 9 N -0.585 5.585 10 C 0.123 3.877 11 C -0.059 4.059 12 C -0.114 4.114 13 C 0.136 3.864 14 H 0.070 0.930 15 C -0.154 4.154 16 C -0.106 4.106 17 C 0.122 3.878 18 N -0.617 5.617 19 C -0.245 4.245 20 H 0.047 0.953 21 C -0.037 4.037 22 N -0.960 5.960 23 Si 0.947 3.053 24 H -0.271 1.271 25 H -0.317 1.317 26 H -0.258 1.258 27 C 0.147 3.853 28 C -0.104 4.104 29 N -0.508 5.508 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.199 0.801 34 H 0.213 0.787 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.038 0.962 45 H 0.048 0.952 46 H 0.260 0.740 47 H 0.039 0.961 48 H 0.048 0.952 49 H 0.063 0.937 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.327 2.307 -11.540 27.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.207 4.207 4 C -0.028 4.028 5 N -0.220 5.220 6 C -0.004 4.004 7 C 0.374 3.626 8 O -0.427 6.427 9 N -0.318 5.318 10 C 0.001 3.999 11 C -0.060 4.060 12 C -0.152 4.152 13 C 0.033 3.967 14 H 0.088 0.912 15 C -0.212 4.212 16 C -0.145 4.145 17 C -0.003 4.003 18 N -0.342 5.342 19 C -0.374 4.374 20 H 0.065 0.935 21 C -0.232 4.232 22 N -0.607 5.607 23 Si 0.776 3.224 24 H -0.198 1.198 25 H -0.246 1.246 26 H -0.182 1.182 27 C 0.022 3.978 28 C -0.143 4.143 29 N -0.225 5.225 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.216 0.784 34 H 0.229 0.771 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.146 0.900 -11.528 26.772 hybrid contribution 0.515 0.434 -0.053 0.676 sum -23.631 1.334 -11.580 26.350 Atomic orbital electron populations 1.20936 0.84947 1.05275 1.04925 1.22579 0.99546 0.87646 0.89697 1.23505 0.96253 1.01606 0.99332 1.24145 0.93462 0.96237 0.88980 1.68603 1.40967 0.99320 1.13123 1.22444 0.87727 0.92891 0.97319 1.17202 0.81070 0.86533 0.77790 1.90737 1.66897 1.33737 1.51318 1.48423 1.03592 1.10034 1.69705 1.22679 0.87494 0.87588 1.02124 1.20972 0.94298 0.95569 0.95184 1.22801 0.93489 0.95971 1.02918 1.21750 0.90089 0.85661 0.99152 0.91214 1.22064 1.02088 1.00494 0.96508 1.21682 0.93395 0.98990 1.00435 1.21422 0.97124 0.98208 0.83497 1.44446 1.27568 1.60717 1.01452 1.18843 0.89804 1.31145 0.97646 0.93497 1.25914 0.96384 0.99432 1.01422 1.69980 1.09527 1.34982 1.46181 0.85894 0.75642 0.80924 0.79905 1.19765 1.24603 1.18196 1.21093 0.86381 0.93689 0.96655 1.21625 0.97269 1.00916 0.94495 1.68020 1.08679 1.32987 1.12854 0.88257 0.90983 0.86642 0.78414 0.77066 0.87868 0.90281 0.88901 0.89690 0.92001 0.89648 0.93388 0.92195 0.89518 0.94395 0.93402 0.93091 0.94333 0.93347 0.91846 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.22 71.24 0.73 -0.18 16 2 C 0.15 2.48 6.82 42.66 0.29 2.77 16 3 C -0.19 -1.88 9.87 22.54 0.22 -1.66 16 4 C 0.14 1.82 11.30 84.78 0.96 2.77 16 5 N -0.50 -11.01 6.63 -189.10 -1.25 -12.26 16 6 C 0.27 7.32 7.57 137.68 1.04 8.36 16 7 C 0.59 18.46 7.67 86.99 0.67 19.13 16 8 O -0.55 -20.50 15.89 -3.60 -0.06 -20.56 16 9 N -0.59 -15.84 3.06 -791.39 -2.42 -18.26 16 10 C 0.12 3.01 4.80 86.56 0.42 3.42 16 11 C -0.06 -1.60 0.54 -51.92 -0.03 -1.63 16 12 C -0.11 -2.77 4.48 31.56 0.14 -2.63 16 13 C 0.14 3.40 3.07 45.38 0.14 3.54 16 14 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 15 C -0.15 -3.49 9.11 71.98 0.66 -2.84 16 16 C -0.11 -3.17 4.83 30.41 0.15 -3.02 16 17 C 0.12 4.79 3.94 86.41 0.34 5.13 16 18 N -0.62 -27.89 2.75 -698.50 -1.92 -29.81 16 19 C -0.24 -13.70 10.03 84.03 0.84 -12.85 16 20 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 21 C -0.04 -2.15 5.23 84.86 0.44 -1.71 16 22 N -0.96 -60.14 13.97 21.65 0.30 -59.84 16 23 Si 0.95 45.64 24.36 68.60 1.67 47.32 16 24 H -0.27 -12.16 6.63 99.48 0.66 -11.51 16 25 H -0.32 -15.76 7.11 99.48 0.71 -15.06 16 26 H -0.26 -11.73 6.64 99.48 0.66 -11.07 16 27 C 0.15 5.48 6.21 86.40 0.54 6.02 16 28 C -0.10 -3.21 4.85 30.41 0.15 -3.07 16 29 N -0.51 -13.39 10.07 -177.25 -1.78 -15.18 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.12 0.25 8.10 -2.39 -0.02 0.23 16 33 H 0.20 0.12 8.06 -2.91 -0.02 0.10 16 34 H 0.21 1.17 8.06 -2.91 -0.02 1.14 16 35 H 0.10 2.60 5.81 -2.39 -0.01 2.59 16 36 H 0.08 1.78 7.99 -2.39 -0.02 1.76 16 37 H 0.09 2.00 7.69 -2.39 -0.02 1.98 16 38 H 0.08 2.18 6.20 -2.39 -0.01 2.17 16 39 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.05 1.29 6.87 -2.39 -0.02 1.28 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.09 2.11 8.09 -2.38 -0.02 2.09 16 44 H 0.04 1.41 6.62 -2.38 -0.02 1.40 16 45 H 0.05 2.12 4.45 -2.39 -0.01 2.11 16 46 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 47 H 0.04 1.35 6.57 -2.39 -0.02 1.33 16 48 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 49 H 0.06 1.84 7.81 -2.38 -0.02 1.82 16 50 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -78.41 381.23 3.08 -75.34 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.85 Total: 11.70 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 7.69 Total: 21.56 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -7.08 Total: -135.35 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.06 Total: -20.56 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.67 Total: 47.32 kcal Total: -78.41 3.08 -75.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086919862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.470 kcal (2) G-P(sol) polarization free energy of solvation -78.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds