Wall clock time and date at job start Wed Apr 1 2020 04:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38782 * 119.90197 * 2 1 4 4 N 1.31766 * 120.11834 * 179.97438 * 3 2 1 5 5 C 1.33029 * 119.93089 * 0.02562 * 4 3 2 6 6 C 1.48157 * 120.09584 * 179.97438 * 5 4 3 7 7 O 1.21516 * 119.99806 * 180.02562 * 6 5 4 8 8 N 1.34780 * 119.99909 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99735 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.92901 * 23.67633 * 9 8 6 11 11 C 1.54146 * 113.63819 * 252.34608 * 9 8 6 12 12 H 1.08994 * 114.24642 * 104.29848 * 11 9 8 13 13 C 1.53058 * 111.68713 * 333.51316 * 11 9 8 14 14 C 1.53022 * 109.40962 * 213.59769 * 13 11 9 15 15 C 1.52940 * 108.93012 * 64.65083 * 14 13 11 16 16 N 1.44107 * 109.36683 * 302.76025 * 15 14 13 17 17 C 1.36931 * 117.16715 * 218.90984 * 16 15 14 18 18 H 1.08002 * 120.00202 * 324.37775 * 17 16 15 19 19 C 1.38816 * 120.00266 * 144.37701 * 17 16 15 20 20 N 1.31613 * 120.00223 * 156.32635 * 19 17 16 21 21 Si 1.86801 * 119.99712 * 336.32974 * 19 17 16 22 22 H 1.48497 * 109.47507 * 95.31317 * 21 19 17 23 23 H 1.48507 * 109.47055 * 215.31388 * 21 19 17 24 24 H 1.48498 * 109.47181 * 335.31202 * 21 19 17 25 25 C 1.45093 * 124.34294 * 39.77908 * 16 15 14 26 26 H 1.09003 * 112.25823 * 203.32748 * 25 16 15 27 27 C 1.53384 * 114.62803 * 72.88511 * 25 16 15 28 28 C 1.52996 * 113.68944 * 332.07816 * 27 25 16 29 29 C 1.52997 * 113.68909 * 103.21562 * 27 25 16 30 30 C 1.39396 * 119.81161 * 0.27603 * 5 4 3 31 31 N 1.32108 * 119.90720 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47086 * 89.99488 * 1 2 3 33 33 H 1.08999 * 109.47175 * 209.99512 * 1 2 3 34 34 H 1.08996 * 109.47255 * 329.99995 * 1 2 3 35 35 H 1.07990 * 119.93784 * 359.97438 * 3 2 1 36 36 H 0.96998 * 119.99612 * 359.97438 * 8 6 5 37 37 H 1.08999 * 109.48826 * 333.57902 * 13 11 9 38 38 H 1.09006 * 109.47988 * 93.60926 * 13 11 9 39 39 H 1.09008 * 109.56264 * 184.48711 * 14 13 11 40 40 H 1.09001 * 109.56628 * 304.70264 * 14 13 11 41 41 H 1.08997 * 109.40097 * 62.78364 * 15 14 13 42 42 H 1.09001 * 109.40230 * 182.60863 * 15 14 13 43 43 H 0.96997 * 119.99992 * 180.02562 * 20 19 17 44 44 H 1.09008 * 109.46833 * 91.56803 * 28 27 25 45 45 H 1.08994 * 109.47873 * 211.56809 * 28 27 25 46 46 H 1.08998 * 109.46986 * 331.57723 * 28 27 25 47 47 H 1.09004 * 109.47300 * 59.99862 * 29 27 25 48 48 H 1.09000 * 109.47369 * 179.97438 * 29 27 25 49 49 H 1.08995 * 109.47334 * 300.00303 * 29 27 25 50 50 H 1.08000 * 120.06635 * 179.70050 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2031 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1846 0.0577 0.0005 6 6 5.6662 0.0590 0.0005 7 8 6.2747 -0.9928 0.0000 8 7 6.3390 1.2269 0.0010 9 6 7.8040 1.2281 0.0016 10 1 8.2296 0.3092 -0.4016 11 6 8.4212 1.6566 1.3476 12 1 8.8260 0.8337 1.9365 13 6 7.4807 2.5720 2.1351 14 6 8.3059 3.5880 2.9279 15 6 9.0505 4.4955 1.9475 16 7 9.8725 3.6897 1.0805 17 6 11.1085 4.1817 0.7560 18 1 11.2472 5.2434 0.6152 19 6 12.1833 3.3157 0.6081 20 7 13.2159 3.6681 -0.1281 21 14 12.1641 1.6502 1.4537 22 1 11.6681 0.6197 0.5065 23 1 13.5399 1.3005 1.8898 24 1 11.2690 1.7063 2.6373 25 6 9.4677 2.4129 0.5227 26 1 10.3212 1.7919 0.2507 27 6 8.4200 2.5064 -0.5937 28 6 7.5134 3.7340 -0.4847 29 6 8.9984 2.3141 -1.9970 30 6 3.4868 -1.1490 -0.0059 31 7 2.1657 -1.1452 0.0005 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5137 34 1 -0.3633 0.8899 0.5138 35 1 1.6563 2.1368 -0.0004 36 1 5.8532 2.0664 0.0010 37 1 6.8225 3.0984 1.4440 38 1 6.8825 1.9738 2.8226 39 1 7.6437 4.1894 3.5509 40 1 9.0232 3.0631 3.5586 41 1 8.3287 5.0538 1.3513 42 1 9.6770 5.1927 2.5038 43 1 13.9667 3.0629 -0.2317 44 1 7.9445 4.5559 -1.0563 45 1 6.5270 3.4937 -0.8813 46 1 7.4229 4.0270 0.5613 47 1 9.4610 1.3296 -2.0676 48 1 8.1988 2.3930 -2.7336 49 1 9.7475 3.0820 -2.1897 50 1 4.0250 -2.0853 -0.0108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087271128.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:00 Heat of formation + Delta-G solvation = 77.189736 kcal Electronic energy + Delta-G solvation = -31806.203176 eV Core-core repulsion = 27835.733734 eV Total energy + Delta-G solvation = -3970.469441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.68784 -41.08422 -38.88789 -35.46092 -35.05525 -33.27419 -33.22509 -32.90924 -31.01532 -30.13031 -28.92856 -27.08615 -25.77786 -25.11484 -24.82727 -23.55185 -22.82824 -21.49962 -20.37179 -19.61487 -18.54062 -18.27061 -17.54293 -16.85680 -16.32207 -15.88224 -15.73146 -15.61758 -15.28643 -14.79450 -14.40464 -14.16397 -13.86578 -13.67533 -13.48731 -13.15814 -13.13684 -12.92265 -12.84388 -12.55983 -12.36806 -12.21675 -12.04888 -11.90699 -11.70094 -11.59499 -11.56972 -11.40401 -10.95391 -10.76289 -10.63469 -10.46533 -10.36434 -9.97556 -9.82964 -9.68326 -9.62160 -9.52312 -9.44849 -9.25463 -8.68049 -8.46279 -6.75773 -6.01780 -3.41115 0.03246 0.65775 2.53402 2.97289 3.30381 3.45482 3.47699 3.53441 3.61750 3.68956 4.00762 4.38712 4.50853 4.62782 4.75321 4.83421 4.91051 5.01813 5.03292 5.07718 5.16871 5.19942 5.28349 5.37232 5.45015 5.47530 5.67529 5.78588 5.82848 5.88549 5.92126 5.97076 6.08818 6.13400 6.17634 6.32868 6.34037 6.37281 6.44408 6.50671 6.53620 6.68784 6.73546 6.74885 6.77198 6.90078 6.96005 7.06615 7.23515 7.57889 8.07415 8.12486 8.38968 9.06614 9.73669 10.05878 11.13487 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020434 B = 0.003110 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.918726 B = 9002.027367 C = 9312.130543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.097 3.903 3 C 0.051 3.949 4 N -0.408 5.408 5 C 0.025 3.975 6 C 0.570 3.430 7 O -0.532 6.532 8 N -0.685 5.685 9 C 0.122 3.878 10 H 0.113 0.887 11 C -0.139 4.139 12 H 0.074 0.926 13 C -0.103 4.103 14 C -0.140 4.140 15 C 0.151 3.849 16 N -0.580 5.580 17 C -0.279 4.279 18 H 0.081 0.919 19 C 0.040 3.960 20 N -0.896 5.896 21 Si 0.864 3.136 22 H -0.284 1.284 23 H -0.301 1.301 24 H -0.265 1.265 25 C 0.180 3.820 26 H 0.090 0.910 27 C -0.107 4.107 28 C -0.142 4.142 29 C -0.129 4.129 30 C 0.115 3.885 31 N -0.443 5.443 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.177 0.823 36 H 0.410 0.590 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.060 0.940 43 H 0.263 0.737 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.090 0.910 47 H 0.048 0.952 48 H 0.042 0.958 49 H 0.070 0.930 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.316 -3.864 0.410 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.045 4.045 3 C -0.112 4.112 4 N -0.125 5.125 5 C -0.116 4.116 6 C 0.353 3.647 7 O -0.409 6.409 8 N -0.335 5.335 9 C 0.017 3.983 10 H 0.131 0.869 11 C -0.160 4.160 12 H 0.092 0.908 13 C -0.140 4.140 14 C -0.179 4.179 15 C 0.025 3.975 16 N -0.298 5.298 17 C -0.408 4.408 18 H 0.098 0.902 19 C -0.161 4.161 20 N -0.536 5.536 21 Si 0.694 3.306 22 H -0.212 1.212 23 H -0.229 1.229 24 H -0.189 1.189 25 C 0.070 3.930 26 H 0.107 0.893 27 C -0.111 4.111 28 C -0.198 4.198 29 C -0.186 4.186 30 C -0.045 4.045 31 N -0.158 5.158 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.194 0.806 36 H 0.249 0.751 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.108 0.892 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.089 0.911 50 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -23.634 -4.617 0.385 24.083 hybrid contribution -0.039 -0.769 0.386 0.862 sum -23.672 -5.386 0.771 24.290 Atomic orbital electron populations 1.20762 0.87225 1.04352 1.03857 1.22685 0.98875 0.89770 0.93133 1.23698 0.90191 0.99483 0.97839 1.68342 1.09190 1.28715 1.06220 1.22293 0.96144 0.90945 1.02180 1.17681 0.84766 0.84836 0.77369 1.90801 1.68267 1.31303 1.50505 1.45927 1.07680 1.08306 1.71600 1.22956 0.77509 0.99927 0.97890 0.86931 1.23344 0.98020 0.98841 0.95783 0.90777 1.21482 0.97175 0.96917 0.98407 1.21951 0.99026 0.98282 0.98622 1.20634 0.93431 0.92836 0.90574 1.42952 1.15667 1.19455 1.51743 1.18887 0.83847 0.94365 1.43668 0.90169 1.25410 0.95424 0.97628 0.97633 1.69886 1.09110 1.37500 1.37145 0.87141 0.76361 0.85378 0.81720 1.21236 1.22910 1.18945 1.21402 0.93201 0.87852 0.90506 0.89276 1.22910 0.97860 0.93035 0.97342 1.22057 0.96678 0.97025 1.04047 1.21636 1.00233 1.01945 0.94776 1.23841 0.89850 0.99457 0.91349 1.68485 1.08305 1.29002 1.09979 0.89493 0.89830 0.89787 0.80638 0.75129 0.90494 0.93292 0.92563 0.92047 0.95746 0.92210 0.92728 0.91877 0.94276 0.89183 0.93276 0.93902 0.91086 0.79954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.44 10.19 36.01 0.37 -0.08 16 2 C 0.10 0.78 6.79 -82.27 -0.56 0.23 16 3 C 0.05 0.41 10.88 -17.38 -0.19 0.22 16 4 N -0.41 -4.49 9.71 -9.61 -0.09 -4.58 16 5 C 0.03 0.31 6.75 -82.84 -0.56 -0.25 16 6 C 0.57 8.52 7.81 -12.19 -0.10 8.43 16 7 O -0.53 -9.35 15.95 5.35 0.09 -9.26 16 8 N -0.68 -9.97 4.34 -53.63 -0.23 -10.20 16 9 C 0.12 2.06 3.62 -66.88 -0.24 1.82 16 10 H 0.11 2.05 7.29 -51.93 -0.38 1.67 16 11 C -0.14 -2.54 4.29 -89.88 -0.39 -2.92 16 12 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 13 C -0.10 -1.61 4.65 -26.69 -0.12 -1.74 16 14 C -0.14 -2.30 6.03 -26.75 -0.16 -2.46 16 15 C 0.15 2.84 5.58 -5.35 -0.03 2.81 16 16 N -0.58 -12.94 2.21 -168.24 -0.37 -13.31 16 17 C -0.28 -7.45 9.56 -15.06 -0.14 -7.60 16 18 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 19 C 0.04 1.12 5.22 -17.43 -0.09 1.03 16 20 N -0.90 -26.69 13.97 55.49 0.78 -25.91 16 21 Si 0.86 21.89 25.07 -169.99 -4.26 17.63 16 22 H -0.28 -7.04 6.62 56.52 0.37 -6.67 16 23 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 24 H -0.26 -6.61 7.11 56.52 0.40 -6.20 16 25 C 0.18 3.76 2.08 -68.39 -0.14 3.62 16 26 H 0.09 2.13 3.53 -51.93 -0.18 1.94 16 27 C -0.11 -1.90 1.35 -153.86 -0.21 -2.11 16 28 C -0.14 -2.21 6.84 37.16 0.25 -1.96 16 29 C -0.13 -2.28 9.16 37.16 0.34 -1.94 16 30 C 0.11 1.31 10.77 -17.00 -0.18 1.13 16 31 N -0.44 -4.65 10.41 -8.94 -0.09 -4.75 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.18 8.08 -51.93 -0.42 -0.24 16 35 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.41 5.43 5.01 -40.82 -0.20 5.23 16 37 H 0.08 1.11 3.64 -51.93 -0.19 0.93 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.03 0.44 5.87 -51.93 -0.30 0.13 16 42 H 0.06 1.16 7.85 -51.93 -0.41 0.75 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.06 1.05 8.08 -51.92 -0.42 0.63 16 45 H 0.04 0.52 6.55 -51.93 -0.34 0.18 16 46 H 0.09 1.40 1.99 -51.93 -0.10 1.30 16 47 H 0.05 0.86 7.94 -51.93 -0.41 0.45 16 48 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 50 H 0.18 1.94 7.65 -52.49 -0.40 1.54 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -31.67 377.12 -7.82 -39.49 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.15 Total: 6.98 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.15 Total: -1.76 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.02 Total: -58.75 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.26 Total: 17.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.67 -7.82 -39.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087271128.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.677 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds