Wall clock time and date at job start Wed Apr 1 2020 04:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38782 * 119.90197 * 2 1 4 4 N 1.31766 * 120.11834 * 179.97438 * 3 2 1 5 5 C 1.33029 * 119.93089 * 0.02562 * 4 3 2 6 6 C 1.48157 * 120.09584 * 179.97438 * 5 4 3 7 7 O 1.21516 * 119.99806 * 180.02562 * 6 5 4 8 8 N 1.34780 * 119.99909 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99735 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.92901 * 23.67633 * 9 8 6 11 11 C 1.54146 * 113.63819 * 252.34608 * 9 8 6 12 12 H 1.08994 * 114.24642 * 104.29848 * 11 9 8 13 13 C 1.53058 * 111.68713 * 333.51316 * 11 9 8 14 14 C 1.53022 * 109.40962 * 213.59769 * 13 11 9 15 15 C 1.52940 * 108.93012 * 64.65083 * 14 13 11 16 16 N 1.44107 * 109.36683 * 302.76025 * 15 14 13 17 17 C 1.36931 * 117.16715 * 218.90984 * 16 15 14 18 18 H 1.08002 * 120.00202 * 324.37775 * 17 16 15 19 19 C 1.38816 * 120.00266 * 144.37701 * 17 16 15 20 20 N 1.31613 * 120.00223 * 156.32635 * 19 17 16 21 21 Si 1.86801 * 119.99712 * 336.32974 * 19 17 16 22 22 H 1.48497 * 109.47507 * 95.31317 * 21 19 17 23 23 H 1.48507 * 109.47055 * 215.31388 * 21 19 17 24 24 H 1.48498 * 109.47181 * 335.31202 * 21 19 17 25 25 C 1.45093 * 124.34294 * 39.77908 * 16 15 14 26 26 H 1.09003 * 112.25823 * 203.32748 * 25 16 15 27 27 C 1.53384 * 114.62803 * 72.88511 * 25 16 15 28 28 C 1.52996 * 113.68944 * 332.07816 * 27 25 16 29 29 C 1.52997 * 113.68909 * 103.21562 * 27 25 16 30 30 C 1.39396 * 119.81161 * 0.27603 * 5 4 3 31 31 N 1.32108 * 119.90720 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47086 * 89.99488 * 1 2 3 33 33 H 1.08999 * 109.47175 * 209.99512 * 1 2 3 34 34 H 1.08996 * 109.47255 * 329.99995 * 1 2 3 35 35 H 1.07990 * 119.93784 * 359.97438 * 3 2 1 36 36 H 0.96998 * 119.99612 * 359.97438 * 8 6 5 37 37 H 1.08999 * 109.48826 * 333.57902 * 13 11 9 38 38 H 1.09006 * 109.47988 * 93.60926 * 13 11 9 39 39 H 1.09008 * 109.56264 * 184.48711 * 14 13 11 40 40 H 1.09001 * 109.56628 * 304.70264 * 14 13 11 41 41 H 1.08997 * 109.40097 * 62.78364 * 15 14 13 42 42 H 1.09001 * 109.40230 * 182.60863 * 15 14 13 43 43 H 0.96997 * 119.99992 * 180.02562 * 20 19 17 44 44 H 1.09008 * 109.46833 * 91.56803 * 28 27 25 45 45 H 1.08994 * 109.47873 * 211.56809 * 28 27 25 46 46 H 1.08998 * 109.46986 * 331.57723 * 28 27 25 47 47 H 1.09004 * 109.47300 * 59.99862 * 29 27 25 48 48 H 1.09000 * 109.47369 * 179.97438 * 29 27 25 49 49 H 1.08995 * 109.47334 * 300.00303 * 29 27 25 50 50 H 1.08000 * 120.06635 * 179.70050 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2031 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1846 0.0577 0.0005 6 6 5.6662 0.0590 0.0005 7 8 6.2747 -0.9928 0.0000 8 7 6.3390 1.2269 0.0010 9 6 7.8040 1.2281 0.0016 10 1 8.2296 0.3092 -0.4016 11 6 8.4212 1.6566 1.3476 12 1 8.8260 0.8337 1.9365 13 6 7.4807 2.5720 2.1351 14 6 8.3059 3.5880 2.9279 15 6 9.0505 4.4955 1.9475 16 7 9.8725 3.6897 1.0805 17 6 11.1085 4.1817 0.7560 18 1 11.2472 5.2434 0.6152 19 6 12.1833 3.3157 0.6081 20 7 13.2159 3.6681 -0.1281 21 14 12.1641 1.6502 1.4537 22 1 11.6681 0.6197 0.5065 23 1 13.5399 1.3005 1.8898 24 1 11.2690 1.7063 2.6373 25 6 9.4677 2.4129 0.5227 26 1 10.3212 1.7919 0.2507 27 6 8.4200 2.5064 -0.5937 28 6 7.5134 3.7340 -0.4847 29 6 8.9984 2.3141 -1.9970 30 6 3.4868 -1.1490 -0.0059 31 7 2.1657 -1.1452 0.0005 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5137 34 1 -0.3633 0.8899 0.5138 35 1 1.6563 2.1368 -0.0004 36 1 5.8532 2.0664 0.0010 37 1 6.8225 3.0984 1.4440 38 1 6.8825 1.9738 2.8226 39 1 7.6437 4.1894 3.5509 40 1 9.0232 3.0631 3.5586 41 1 8.3287 5.0538 1.3513 42 1 9.6770 5.1927 2.5038 43 1 13.9667 3.0629 -0.2317 44 1 7.9445 4.5559 -1.0563 45 1 6.5270 3.4937 -0.8813 46 1 7.4229 4.0270 0.5613 47 1 9.4610 1.3296 -2.0676 48 1 8.1988 2.3930 -2.7336 49 1 9.7475 3.0820 -2.1897 50 1 4.0250 -2.0853 -0.0108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087271128.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:59 Heat of formation + Delta-G solvation = 55.752777 kcal Electronic energy + Delta-G solvation = -31807.132752 eV Core-core repulsion = 27835.733734 eV Total energy + Delta-G solvation = -3971.399018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.75904 -42.21125 -40.08223 -37.02616 -35.84858 -34.87294 -34.33636 -33.87107 -32.82379 -31.62314 -29.60030 -28.45533 -27.33007 -26.45748 -25.63630 -24.65420 -24.34893 -22.80138 -21.67160 -20.99369 -19.91689 -19.35965 -18.64249 -18.53900 -17.48053 -17.08732 -16.87293 -16.68709 -16.37102 -16.03819 -15.78053 -15.49072 -15.31814 -15.10116 -14.90760 -14.43808 -14.07759 -14.04292 -13.86062 -13.75319 -13.65227 -13.43487 -13.22759 -13.20976 -13.06008 -12.94901 -12.78315 -12.71864 -12.45025 -12.28624 -12.14777 -11.96779 -11.74438 -11.61146 -11.37354 -11.28661 -11.06329 -10.85790 -10.52832 -10.35417 -10.23077 -9.95900 -8.60503 -8.20917 -5.53244 -0.74336 -0.05378 1.24403 1.36032 1.45757 1.54201 1.87633 2.38739 2.63087 2.84760 3.01002 3.05346 3.29877 3.36547 3.49519 3.51575 3.72013 3.76730 3.83286 3.93032 4.07220 4.13454 4.28120 4.37642 4.41181 4.46113 4.52175 4.54896 4.68481 4.73839 4.78608 4.78742 4.85686 4.92443 4.94126 5.02270 5.04283 5.05847 5.14087 5.21585 5.25393 5.27208 5.35312 5.37278 5.44566 5.51285 5.69644 5.97215 6.00202 6.21476 6.35211 6.60911 7.00166 7.08955 7.75768 8.04706 8.98631 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020434 B = 0.003110 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.918726 B = 9002.027367 C = 9312.130543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.107 3.893 3 C 0.059 3.941 4 N -0.418 5.418 5 C 0.003 3.997 6 C 0.572 3.428 7 O -0.567 6.567 8 N -0.675 5.675 9 C 0.137 3.863 10 H 0.096 0.904 11 C -0.137 4.137 12 H 0.058 0.942 13 C -0.096 4.096 14 C -0.132 4.132 15 C 0.143 3.857 16 N -0.588 5.588 17 C -0.256 4.256 18 H 0.052 0.948 19 C -0.010 4.010 20 N -0.942 5.942 21 Si 0.919 3.081 22 H -0.283 1.283 23 H -0.311 1.311 24 H -0.259 1.259 25 C 0.159 3.841 26 H 0.055 0.945 27 C -0.100 4.100 28 C -0.136 4.136 29 C -0.126 4.126 30 C 0.108 3.892 31 N -0.462 5.462 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.220 0.780 36 H 0.419 0.581 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.040 0.960 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.260 0.740 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.095 0.905 47 H 0.041 0.959 48 H 0.069 0.931 49 H 0.043 0.957 50 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.480 -3.238 1.107 29.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.036 4.036 3 C -0.105 4.105 4 N -0.134 5.134 5 C -0.136 4.136 6 C 0.357 3.643 7 O -0.446 6.446 8 N -0.326 5.326 9 C 0.031 3.969 10 H 0.114 0.886 11 C -0.159 4.159 12 H 0.077 0.923 13 C -0.133 4.133 14 C -0.170 4.170 15 C 0.019 3.981 16 N -0.308 5.308 17 C -0.386 4.386 18 H 0.069 0.931 19 C -0.207 4.207 20 N -0.586 5.586 21 Si 0.749 3.251 22 H -0.211 1.211 23 H -0.240 1.240 24 H -0.183 1.183 25 C 0.051 3.949 26 H 0.073 0.927 27 C -0.104 4.104 28 C -0.192 4.192 29 C -0.184 4.184 30 C -0.050 4.050 31 N -0.178 5.178 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.236 0.764 36 H 0.260 0.740 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.113 0.887 47 H 0.060 0.940 48 H 0.088 0.912 49 H 0.062 0.938 50 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -28.833 -4.005 1.102 29.131 hybrid contribution 1.354 -0.883 0.133 1.622 sum -27.479 -4.889 1.235 27.938 Atomic orbital electron populations 1.20951 0.84198 1.05757 1.05156 1.23437 1.00733 0.89135 0.90319 1.24443 0.89188 1.01157 0.95760 1.68307 1.10647 1.27858 1.06629 1.21785 0.94501 0.91967 1.05301 1.18030 0.85983 0.84115 0.76160 1.90780 1.69410 1.32446 1.51934 1.45708 1.06347 1.08847 1.71744 1.22508 0.79064 0.98649 0.96643 0.88645 1.23361 0.97639 0.98505 0.96352 0.92301 1.21494 0.96658 0.96484 0.98649 1.21871 0.98998 0.98115 0.98029 1.20807 0.93462 0.92952 0.90920 1.43044 1.14625 1.20103 1.52992 1.18837 0.85617 0.93071 1.41096 0.93079 1.25864 0.95534 1.00467 0.98801 1.69986 1.10177 1.38878 1.39606 0.86247 0.75472 0.82506 0.80878 1.21117 1.24030 1.18339 1.21416 0.93377 0.87018 0.93080 0.92727 1.22814 0.97027 0.94615 0.95899 1.22024 0.97472 0.95350 1.04372 1.21598 1.00349 1.00539 0.95877 1.23784 0.90475 0.99144 0.91638 1.68558 1.07718 1.30514 1.10986 0.87947 0.90118 0.86726 0.76373 0.74030 0.88592 0.91596 0.88688 0.94100 0.93483 0.93284 0.93066 0.92916 0.91230 0.88731 0.94004 0.91231 0.93829 0.80481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.39 10.19 71.24 0.73 0.33 16 2 C 0.11 1.31 6.79 42.65 0.29 1.60 16 3 C 0.06 0.68 10.88 84.83 0.92 1.60 16 4 N -0.42 -7.73 9.71 -184.33 -1.79 -9.52 16 5 C 0.00 0.07 6.75 41.88 0.28 0.35 16 6 C 0.57 16.45 7.81 86.88 0.68 17.13 16 7 O -0.57 -20.01 15.95 -3.77 -0.06 -20.07 16 8 N -0.68 -18.25 4.34 -441.88 -1.92 -20.17 16 9 C 0.14 4.52 3.62 45.67 0.17 4.69 16 10 H 0.10 3.52 7.29 -2.39 -0.02 3.50 16 11 C -0.14 -4.89 4.29 -10.31 -0.04 -4.93 16 12 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 13 C -0.10 -2.72 4.65 30.62 0.14 -2.57 16 14 C -0.13 -3.95 6.03 30.58 0.18 -3.76 16 15 C 0.14 5.16 5.58 86.80 0.48 5.65 16 16 N -0.59 -26.28 2.21 -686.18 -1.52 -27.80 16 17 C -0.26 -14.09 9.56 84.04 0.80 -13.28 16 18 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 19 C -0.01 -0.58 5.22 84.86 0.44 -0.14 16 20 N -0.94 -58.73 13.97 21.65 0.30 -58.43 16 21 Si 0.92 47.39 25.07 68.60 1.72 49.11 16 22 H -0.28 -14.36 6.62 99.48 0.66 -13.70 16 23 H -0.31 -16.38 7.11 99.48 0.71 -15.68 16 24 H -0.26 -12.90 7.11 99.48 0.71 -12.20 16 25 C 0.16 6.69 2.08 45.45 0.09 6.79 16 26 H 0.06 2.69 3.53 -2.39 -0.01 2.68 16 27 C -0.10 -3.44 1.35 -51.76 -0.07 -3.51 16 28 C -0.14 -3.87 6.84 71.98 0.49 -3.37 16 29 C -0.13 -4.49 9.16 71.98 0.66 -3.83 16 30 C 0.11 2.36 10.77 84.93 0.91 3.28 16 31 N -0.46 -8.74 10.41 -182.21 -1.90 -10.64 16 32 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.11 -0.21 8.08 -2.39 -0.02 -0.22 16 35 H 0.22 0.50 8.06 -2.92 -0.02 0.47 16 36 H 0.42 9.64 5.01 -92.71 -0.46 9.17 16 37 H 0.10 2.36 3.64 -2.39 -0.01 2.36 16 38 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.52 5.87 -2.39 -0.01 1.51 16 42 H 0.05 1.86 7.85 -2.39 -0.02 1.84 16 43 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.05 1.63 8.08 -2.38 -0.02 1.61 16 45 H 0.07 1.57 6.55 -2.39 -0.02 1.55 16 46 H 0.09 2.60 1.99 -2.39 0.00 2.60 16 47 H 0.04 1.51 7.94 -2.38 -0.02 1.49 16 48 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.18 3.84 7.65 -2.91 -0.02 3.82 16 Total: -1.00 -73.49 377.12 2.48 -71.01 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.47 Total: 20.49 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 7.17 Total: 6.01 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -6.82 Total: -126.55 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.06 Total: -20.07 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.72 Total: 49.11 kcal Total: -73.49 2.48 -71.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087271128.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.767 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds