Wall clock time and date at job start Wed Apr 1 2020 04:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38775 * 119.90082 * 2 1 4 4 N 1.31774 * 120.11991 * 179.71980 * 3 2 1 5 5 C 1.33027 * 119.92874 * 0.55215 * 4 3 2 6 6 C 1.48139 * 120.09922 * 179.74657 * 5 4 3 7 7 O 1.21518 * 120.00460 * 179.72627 * 6 5 4 8 8 N 1.34780 * 120.00032 * 359.71985 * 6 5 4 9 9 C 1.46500 * 120.00294 * 180.02562 * 8 6 5 10 10 H 1.08998 * 113.34787 * 22.06820 * 9 8 6 11 11 C 1.50009 * 114.12281 * 249.14408 * 9 8 6 12 12 H 1.09008 * 112.50580 * 170.15653 * 11 9 8 13 13 C 1.51196 * 126.16794 * 27.75860 * 11 9 8 14 14 C 1.54090 * 106.20242 * 198.59105 * 13 11 9 15 15 C 1.52493 * 112.67360 * 55.43424 * 14 13 11 16 16 N 1.48402 * 111.86843 * 313.21440 * 15 14 13 17 17 C 1.36936 * 123.16957 * 231.84204 * 16 15 14 18 18 H 1.08004 * 120.00420 * 150.31379 * 17 16 15 19 19 C 1.38812 * 119.99933 * 330.30459 * 17 16 15 20 20 N 1.31620 * 120.00017 * 347.91412 * 19 17 16 21 21 Si 1.86803 * 119.99932 * 167.91173 * 19 17 16 22 22 H 1.48495 * 109.47300 * 90.00326 * 21 19 17 23 23 H 1.48502 * 109.47207 * 210.00283 * 21 19 17 24 24 H 1.48501 * 109.47318 * 329.99857 * 21 19 17 25 25 C 1.45379 * 113.66615 * 51.83789 * 16 15 14 26 26 H 1.09007 * 112.08115 * 58.81045 * 25 16 15 27 27 C 1.49957 * 126.68608 * 204.03072 * 25 16 15 28 28 C 1.52997 * 114.08365 * 25.69713 * 27 25 16 29 29 C 1.53002 * 114.08307 * 253.27553 * 27 25 16 30 30 C 1.39407 * 119.80813 * 359.46977 * 5 4 3 31 31 N 1.32099 * 119.90610 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47586 * 269.98001 * 1 2 3 33 33 H 1.08998 * 109.47019 * 29.98189 * 1 2 3 34 34 H 1.09003 * 109.47120 * 149.98288 * 1 2 3 35 35 H 1.07997 * 119.94168 * 359.97438 * 3 2 1 36 36 H 0.96999 * 119.99859 * 0.02562 * 8 6 5 37 37 H 1.08999 * 110.10537 * 79.41637 * 13 11 9 38 38 H 1.09005 * 110.19852 * 317.81118 * 13 11 9 39 39 H 1.09003 * 108.83833 * 294.61480 * 14 13 11 40 40 H 1.09001 * 108.84441 * 176.25961 * 14 13 11 41 41 H 1.09003 * 109.00157 * 192.59922 * 15 14 13 42 42 H 1.09004 * 109.00113 * 73.82923 * 15 14 13 43 43 H 0.97003 * 119.99970 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.47000 * 147.33422 * 28 27 25 45 45 H 1.08999 * 109.47102 * 267.32823 * 28 27 25 46 46 H 1.08995 * 109.47578 * 27.33142 * 28 27 25 47 47 H 1.08999 * 109.47633 * 306.07701 * 29 27 25 48 48 H 1.09001 * 109.47076 * 66.07748 * 29 27 25 49 49 H 1.08996 * 109.47347 * 186.07452 * 29 27 25 50 50 H 1.07998 * 120.06117 * 180.27922 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0056 5 6 4.1847 0.0578 0.0001 6 6 5.6660 0.0591 0.0007 7 8 6.2746 -0.9927 0.0007 8 7 6.3389 1.2269 0.0010 9 6 7.8039 1.2282 0.0010 10 1 8.2368 0.3013 -0.3753 11 6 8.4166 1.7158 1.2805 12 1 9.4928 1.5471 1.3187 13 6 7.7955 1.6307 2.6564 14 6 8.5486 2.6508 3.5320 15 6 8.5252 4.0586 2.9464 16 7 8.8584 4.0613 1.5002 17 6 9.8240 4.8649 0.9554 18 1 10.3643 4.5411 0.0780 19 6 10.1085 6.0958 1.5306 20 7 9.3033 6.5978 2.4428 21 14 11.6340 7.0399 1.0100 22 1 11.3002 7.9295 -0.1312 23 1 12.1225 7.8581 2.1489 24 1 12.6921 6.0827 0.5985 25 6 8.0630 3.1305 0.7164 26 1 6.9955 3.3374 0.7938 27 6 8.4395 2.5175 -0.5993 28 6 9.9483 2.4192 -0.8333 29 6 7.6773 3.0904 -1.7959 30 6 3.4867 -1.1490 -0.0003 31 7 2.1656 -1.1451 -0.0005 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3633 0.8901 -0.5135 34 1 -0.3633 -0.8899 -0.5141 35 1 1.6562 2.1368 -0.0004 36 1 5.8532 2.0665 0.0013 37 1 7.9186 0.6263 3.0616 38 1 6.7373 1.8875 2.6083 39 1 9.5851 2.3293 3.6344 40 1 8.0897 2.6730 4.5204 41 1 9.2487 4.6764 3.4784 42 1 7.5304 4.4830 3.0822 43 1 9.5022 7.4578 2.8450 44 1 10.1669 1.5310 -1.4260 45 1 10.2918 3.3055 -1.3667 46 1 10.4611 2.3510 0.1260 47 1 6.6054 3.0223 -1.6104 48 1 7.9559 4.1345 -1.9380 49 1 7.9277 2.5224 -2.6919 50 1 4.0251 -2.0853 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087271129.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:04 Heat of formation + Delta-G solvation = 81.944601 kcal Electronic energy + Delta-G solvation = -31460.559222 eV Core-core repulsion = 27490.295967 eV Total energy + Delta-G solvation = -3970.263255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.64057 -41.04200 -38.73816 -35.30187 -34.98562 -33.27954 -33.15629 -32.80921 -30.21624 -29.40985 -28.76904 -27.09180 -25.84583 -25.00969 -24.75965 -23.66556 -22.38296 -21.23647 -20.49860 -19.22314 -18.44914 -18.29315 -17.47087 -16.66294 -16.24777 -15.72274 -15.57356 -15.07888 -14.83547 -14.58808 -14.11936 -14.02543 -13.79968 -13.71965 -13.46605 -13.07561 -13.06267 -12.85576 -12.75994 -12.55321 -12.40046 -12.04906 -11.97091 -11.75928 -11.49242 -11.33927 -11.14287 -11.03870 -10.85574 -10.65834 -10.47919 -10.36376 -10.20558 -10.06519 -9.93291 -9.85459 -9.55276 -9.41252 -9.28926 -8.86837 -8.68077 -8.39748 -6.52005 -5.75362 -3.21222 0.10145 0.73656 2.59108 2.98436 3.36481 3.44097 3.44852 3.52321 3.67735 3.76278 4.07691 4.45986 4.49055 4.69559 4.71785 4.82917 4.98234 5.09572 5.14225 5.17563 5.24486 5.29327 5.46501 5.51171 5.59948 5.76687 5.88500 5.89832 5.95239 5.98243 6.04085 6.07596 6.26981 6.29012 6.38195 6.41951 6.47374 6.59420 6.62731 6.65011 6.74281 6.79614 6.81305 6.88837 7.03710 7.14236 7.30436 7.40715 7.61656 7.66482 7.84070 8.17097 8.44205 9.19387 9.84724 10.52292 11.32654 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016864 B = 0.002947 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.970715 B = 9498.441074 C = 9758.094478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.097 3.903 3 C 0.053 3.947 4 N -0.406 5.406 5 C 0.025 3.975 6 C 0.576 3.424 7 O -0.533 6.533 8 N -0.677 5.677 9 C 0.137 3.863 10 H 0.100 0.900 11 C -0.174 4.174 12 H 0.102 0.898 13 C -0.084 4.084 14 C -0.136 4.136 15 C 0.170 3.830 16 N -0.569 5.569 17 C -0.244 4.244 18 H 0.075 0.925 19 C 0.002 3.998 20 N -0.905 5.905 21 Si 0.898 3.102 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.152 3.848 26 H 0.043 0.957 27 C -0.066 4.066 28 C -0.116 4.116 29 C -0.134 4.134 30 C 0.114 3.886 31 N -0.443 5.443 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.177 0.823 36 H 0.412 0.588 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.014 0.986 43 H 0.252 0.748 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.048 0.952 48 H 0.064 0.936 49 H 0.049 0.951 50 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.078 -11.688 -5.066 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.044 4.044 3 C -0.111 4.111 4 N -0.123 5.123 5 C -0.116 4.116 6 C 0.359 3.641 7 O -0.409 6.409 8 N -0.327 5.327 9 C 0.031 3.969 10 H 0.118 0.882 11 C -0.195 4.195 12 H 0.119 0.881 13 C -0.122 4.122 14 C -0.175 4.175 15 C 0.045 3.955 16 N -0.291 5.291 17 C -0.373 4.373 18 H 0.092 0.908 19 C -0.196 4.196 20 N -0.550 5.550 21 Si 0.728 3.272 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.044 3.956 26 H 0.061 0.939 27 C -0.067 4.067 28 C -0.174 4.174 29 C -0.191 4.191 30 C -0.045 4.045 31 N -0.158 5.158 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.194 0.806 36 H 0.250 0.750 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.033 0.967 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.508 -12.208 -4.959 18.871 hybrid contribution 0.411 1.185 -0.039 1.255 sum -13.097 -11.023 -4.998 17.833 Atomic orbital electron populations 1.20762 0.87238 1.04304 1.03878 1.22674 0.98860 0.89766 0.93148 1.23717 0.90180 0.99512 0.97660 1.68371 1.09228 1.28669 1.06007 1.22248 0.96044 0.90966 1.02295 1.17562 0.84747 0.84544 0.77227 1.90787 1.68259 1.31249 1.50619 1.45589 1.07005 1.08507 1.71630 1.21625 0.78384 0.98778 0.98072 0.88226 1.23354 1.00666 1.02268 0.93229 0.88056 1.21013 0.98590 0.97624 0.94985 1.22100 0.99323 0.98524 0.97555 1.20760 0.99343 0.91145 0.84250 1.43863 1.39010 1.45108 1.01076 1.19257 1.10563 0.95512 1.11987 0.90773 1.25172 0.98445 0.96178 0.99806 1.69976 1.36187 1.18419 1.30390 0.86365 0.83237 0.79940 0.77644 1.21495 1.21733 1.20459 1.21725 0.93551 0.89175 0.91182 0.93939 1.21874 0.96437 0.93747 0.94627 1.21635 0.92411 1.00720 1.02608 1.21673 0.99125 1.01357 0.96948 1.23820 0.89858 0.99375 0.91488 1.68474 1.08296 1.28998 1.10065 0.89485 0.89785 0.89868 0.80612 0.75005 0.94014 0.93264 0.93148 0.93459 0.89704 0.96742 0.93772 0.93767 0.91676 0.90661 0.93281 0.91725 0.93236 0.79972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 10.19 36.01 0.37 -0.15 16 2 C 0.10 0.85 6.79 -82.28 -0.56 0.29 16 3 C 0.05 0.48 10.88 -17.38 -0.19 0.29 16 4 N -0.41 -4.91 9.71 -9.62 -0.09 -5.00 16 5 C 0.03 0.33 6.75 -82.85 -0.56 -0.23 16 6 C 0.58 8.63 7.81 -12.19 -0.10 8.53 16 7 O -0.53 -9.09 15.94 5.35 0.09 -9.00 16 8 N -0.68 -10.12 4.25 -58.52 -0.25 -10.37 16 9 C 0.14 2.19 3.98 -71.84 -0.29 1.91 16 10 H 0.10 1.62 7.46 -51.93 -0.39 1.23 16 11 C -0.17 -3.09 2.96 -95.83 -0.28 -3.37 16 12 H 0.10 1.90 6.07 -51.92 -0.32 1.59 16 13 C -0.08 -1.50 5.93 -27.07 -0.16 -1.66 16 14 C -0.14 -2.61 5.90 -26.42 -0.16 -2.77 16 15 C 0.17 3.96 5.28 -3.25 -0.02 3.95 16 16 N -0.57 -13.45 2.87 -169.43 -0.49 -13.94 16 17 C -0.24 -6.28 9.10 -15.06 -0.14 -6.42 16 18 H 0.07 1.84 5.18 -52.48 -0.27 1.57 16 19 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 20 N -0.91 -25.71 11.20 55.49 0.62 -25.09 16 21 Si 0.90 21.25 29.57 -169.99 -5.03 16.23 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.15 2.99 2.92 -72.15 -0.21 2.78 16 26 H 0.04 0.88 6.44 -51.92 -0.33 0.55 16 27 C -0.07 -1.10 1.39 -159.16 -0.22 -1.32 16 28 C -0.12 -1.93 7.31 37.16 0.27 -1.66 16 29 C -0.13 -2.05 9.12 37.16 0.34 -1.71 16 30 C 0.11 1.34 10.77 -17.00 -0.18 1.16 16 31 N -0.44 -4.84 10.41 -8.94 -0.09 -4.94 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.24 8.08 -51.93 -0.42 -0.18 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.41 6.09 5.64 -40.82 -0.23 5.86 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.88 7.96 -51.93 -0.41 0.47 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 2.22 6.31 -51.93 -0.33 1.89 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 1.12 7.04 -51.93 -0.37 0.75 16 46 H 0.07 1.37 5.76 -51.93 -0.30 1.07 16 47 H 0.05 0.71 6.57 -51.93 -0.34 0.37 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.18 1.93 7.65 -52.49 -0.40 1.53 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -30.59 387.32 -9.04 -39.64 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -7.47 Total: 7.04 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.17 Total: -0.40 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.30 Total: -59.33 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.59 -9.04 -39.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087271129.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.580 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds