Wall clock time and date at job start Wed Apr 1 2020 04:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38775 * 119.90082 * 2 1 4 4 N 1.31774 * 120.11991 * 179.71980 * 3 2 1 5 5 C 1.33027 * 119.92874 * 0.55215 * 4 3 2 6 6 C 1.48139 * 120.09922 * 179.74657 * 5 4 3 7 7 O 1.21518 * 120.00460 * 179.72627 * 6 5 4 8 8 N 1.34780 * 120.00032 * 359.71985 * 6 5 4 9 9 C 1.46500 * 120.00294 * 180.02562 * 8 6 5 10 10 H 1.08998 * 113.34787 * 22.06820 * 9 8 6 11 11 C 1.50009 * 114.12281 * 249.14408 * 9 8 6 12 12 H 1.09008 * 112.50580 * 170.15653 * 11 9 8 13 13 C 1.51196 * 126.16794 * 27.75860 * 11 9 8 14 14 C 1.54090 * 106.20242 * 198.59105 * 13 11 9 15 15 C 1.52493 * 112.67360 * 55.43424 * 14 13 11 16 16 N 1.48402 * 111.86843 * 313.21440 * 15 14 13 17 17 C 1.36936 * 123.16957 * 231.84204 * 16 15 14 18 18 H 1.08004 * 120.00420 * 150.31379 * 17 16 15 19 19 C 1.38812 * 119.99933 * 330.30459 * 17 16 15 20 20 N 1.31620 * 120.00017 * 347.91412 * 19 17 16 21 21 Si 1.86803 * 119.99932 * 167.91173 * 19 17 16 22 22 H 1.48495 * 109.47300 * 90.00326 * 21 19 17 23 23 H 1.48502 * 109.47207 * 210.00283 * 21 19 17 24 24 H 1.48501 * 109.47318 * 329.99857 * 21 19 17 25 25 C 1.45379 * 113.66615 * 51.83789 * 16 15 14 26 26 H 1.09007 * 112.08115 * 58.81045 * 25 16 15 27 27 C 1.49957 * 126.68608 * 204.03072 * 25 16 15 28 28 C 1.52997 * 114.08365 * 25.69713 * 27 25 16 29 29 C 1.53002 * 114.08307 * 253.27553 * 27 25 16 30 30 C 1.39407 * 119.80813 * 359.46977 * 5 4 3 31 31 N 1.32099 * 119.90610 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47586 * 269.98001 * 1 2 3 33 33 H 1.08998 * 109.47019 * 29.98189 * 1 2 3 34 34 H 1.09003 * 109.47120 * 149.98288 * 1 2 3 35 35 H 1.07997 * 119.94168 * 359.97438 * 3 2 1 36 36 H 0.96999 * 119.99859 * 0.02562 * 8 6 5 37 37 H 1.08999 * 110.10537 * 79.41637 * 13 11 9 38 38 H 1.09005 * 110.19852 * 317.81118 * 13 11 9 39 39 H 1.09003 * 108.83833 * 294.61480 * 14 13 11 40 40 H 1.09001 * 108.84441 * 176.25961 * 14 13 11 41 41 H 1.09003 * 109.00157 * 192.59922 * 15 14 13 42 42 H 1.09004 * 109.00113 * 73.82923 * 15 14 13 43 43 H 0.97003 * 119.99970 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.47000 * 147.33422 * 28 27 25 45 45 H 1.08999 * 109.47102 * 267.32823 * 28 27 25 46 46 H 1.08995 * 109.47578 * 27.33142 * 28 27 25 47 47 H 1.08999 * 109.47633 * 306.07701 * 29 27 25 48 48 H 1.09001 * 109.47076 * 66.07748 * 29 27 25 49 49 H 1.08996 * 109.47347 * 186.07452 * 29 27 25 50 50 H 1.07998 * 120.06117 * 180.27922 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0056 5 6 4.1847 0.0578 0.0001 6 6 5.6660 0.0591 0.0007 7 8 6.2746 -0.9927 0.0007 8 7 6.3389 1.2269 0.0010 9 6 7.8039 1.2282 0.0010 10 1 8.2368 0.3013 -0.3753 11 6 8.4166 1.7158 1.2805 12 1 9.4928 1.5471 1.3187 13 6 7.7955 1.6307 2.6564 14 6 8.5486 2.6508 3.5320 15 6 8.5252 4.0586 2.9464 16 7 8.8584 4.0613 1.5002 17 6 9.8240 4.8649 0.9554 18 1 10.3643 4.5411 0.0780 19 6 10.1085 6.0958 1.5306 20 7 9.3033 6.5978 2.4428 21 14 11.6340 7.0399 1.0100 22 1 11.3002 7.9295 -0.1312 23 1 12.1225 7.8581 2.1489 24 1 12.6921 6.0827 0.5985 25 6 8.0630 3.1305 0.7164 26 1 6.9955 3.3374 0.7938 27 6 8.4395 2.5175 -0.5993 28 6 9.9483 2.4192 -0.8333 29 6 7.6773 3.0904 -1.7959 30 6 3.4867 -1.1490 -0.0003 31 7 2.1656 -1.1451 -0.0005 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3633 0.8901 -0.5135 34 1 -0.3633 -0.8899 -0.5141 35 1 1.6562 2.1368 -0.0004 36 1 5.8532 2.0665 0.0013 37 1 7.9186 0.6263 3.0616 38 1 6.7373 1.8875 2.6083 39 1 9.5851 2.3293 3.6344 40 1 8.0897 2.6730 4.5204 41 1 9.2487 4.6764 3.4784 42 1 7.5304 4.4830 3.0822 43 1 9.5022 7.4578 2.8450 44 1 10.1669 1.5310 -1.4260 45 1 10.2918 3.3055 -1.3667 46 1 10.4611 2.3510 0.1260 47 1 6.6054 3.0223 -1.6104 48 1 7.9559 4.1345 -1.9380 49 1 7.9277 2.5224 -2.6919 50 1 4.0251 -2.0853 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087271129.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:03 Heat of formation + Delta-G solvation = 63.117016 kcal Electronic energy + Delta-G solvation = -31461.375647 eV Core-core repulsion = 27490.295967 eV Total energy + Delta-G solvation = -3971.079680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.75078 -42.17597 -39.94460 -36.94573 -35.84737 -34.80082 -34.31445 -33.87048 -32.04827 -30.83058 -29.56106 -28.43805 -27.51738 -26.42633 -25.65870 -24.64082 -23.97662 -22.45893 -22.02018 -20.69794 -19.83945 -19.29675 -18.60825 -18.35022 -17.07130 -16.83533 -16.67521 -16.53682 -16.12177 -15.82011 -15.58340 -15.42512 -15.28190 -15.06560 -14.81958 -14.36065 -14.13896 -13.96579 -13.73844 -13.66236 -13.59438 -13.23438 -13.19928 -12.91464 -12.80650 -12.77520 -12.73205 -12.44997 -12.30429 -12.28441 -12.08059 -11.95176 -11.68594 -11.66213 -11.52710 -11.35380 -10.97194 -10.58419 -10.35460 -10.25522 -10.22937 -9.95820 -8.45440 -7.76967 -5.25227 -0.73384 -0.05520 1.47082 1.49235 1.56607 1.57033 1.87573 2.54750 2.64162 2.86268 3.01480 3.26499 3.30241 3.38295 3.47497 3.70019 3.71109 3.92055 3.93648 4.05995 4.13609 4.23497 4.36240 4.45992 4.48148 4.55786 4.62080 4.71058 4.75507 4.77979 4.84542 4.86112 4.96663 5.02816 5.04221 5.09613 5.13044 5.17223 5.20621 5.29202 5.33162 5.34736 5.47106 5.53355 5.54169 5.70272 5.77225 5.82053 6.01627 6.34482 6.45947 6.60616 7.00433 7.18730 7.90387 8.56469 9.28607 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016864 B = 0.002947 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.970715 B = 9498.441074 C = 9758.094478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.108 3.892 3 C 0.054 3.946 4 N -0.425 5.425 5 C 0.001 3.999 6 C 0.579 3.421 7 O -0.557 6.557 8 N -0.676 5.676 9 C 0.153 3.847 10 H 0.105 0.895 11 C -0.163 4.163 12 H 0.095 0.905 13 C -0.078 4.078 14 C -0.125 4.125 15 C 0.178 3.822 16 N -0.584 5.584 17 C -0.238 4.238 18 H 0.084 0.916 19 C -0.055 4.055 20 N -0.941 5.941 21 Si 0.956 3.044 22 H -0.288 1.288 23 H -0.300 1.300 24 H -0.268 1.268 25 C 0.137 3.863 26 H 0.036 0.964 27 C -0.062 4.062 28 C -0.113 4.113 29 C -0.129 4.129 30 C 0.112 3.888 31 N -0.460 5.460 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.212 0.788 36 H 0.413 0.587 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.051 0.949 42 H -0.011 1.011 43 H 0.245 0.755 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.048 0.952 49 H 0.070 0.930 50 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.664 -13.010 -6.328 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.035 4.035 3 C -0.110 4.110 4 N -0.142 5.142 5 C -0.137 4.137 6 C 0.364 3.636 7 O -0.436 6.436 8 N -0.326 5.326 9 C 0.047 3.953 10 H 0.123 0.877 11 C -0.184 4.184 12 H 0.113 0.887 13 C -0.115 4.115 14 C -0.164 4.164 15 C 0.053 3.947 16 N -0.306 5.306 17 C -0.368 4.368 18 H 0.101 0.899 19 C -0.250 4.250 20 N -0.588 5.588 21 Si 0.786 3.214 22 H -0.215 1.215 23 H -0.227 1.227 24 H -0.193 1.193 25 C 0.030 3.970 26 H 0.053 0.947 27 C -0.063 4.063 28 C -0.171 4.171 29 C -0.186 4.186 30 C -0.047 4.047 31 N -0.175 5.175 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.229 0.771 36 H 0.251 0.749 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.007 0.993 43 H 0.054 0.946 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.089 0.911 50 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.079 -13.574 -6.243 21.227 hybrid contribution 0.714 1.571 0.349 1.761 sum -14.364 -12.004 -5.894 19.625 Atomic orbital electron populations 1.20942 0.84181 1.05765 1.05119 1.23380 1.00705 0.89023 0.90386 1.24369 0.89263 1.01177 0.96207 1.68325 1.10780 1.28455 1.06624 1.21891 0.94851 0.91836 1.05170 1.17827 0.85709 0.83890 0.76157 1.90762 1.69132 1.31919 1.51758 1.45521 1.06422 1.08759 1.71855 1.21392 0.79107 0.98416 0.96368 0.87695 1.23285 1.00537 1.00639 0.93914 0.88742 1.20941 0.98111 0.97741 0.94746 1.21932 0.99824 0.96261 0.98395 1.20559 0.96691 0.92962 0.84488 1.44051 1.39487 1.45303 1.01725 1.19642 1.10448 0.95257 1.11424 0.89871 1.25857 1.01082 0.97433 1.00612 1.70142 1.37941 1.18562 1.32138 0.85431 0.80589 0.78695 0.76728 1.21463 1.22680 1.19295 1.21942 0.92643 0.88916 0.93509 0.94709 1.21901 0.97012 0.93524 0.93889 1.21576 0.91821 1.01727 1.01928 1.21624 0.99297 1.00544 0.97129 1.23853 0.90381 0.99107 0.91311 1.68563 1.07822 1.30172 1.10960 0.88046 0.86995 0.89768 0.77118 0.74889 0.92416 0.93454 0.93187 0.91800 0.93094 0.99273 0.94618 0.90886 0.92470 0.92563 0.92643 0.93293 0.91078 0.79788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.19 71.24 0.73 0.09 16 2 C 0.11 1.60 6.79 42.65 0.29 1.89 16 3 C 0.05 0.84 10.88 84.83 0.92 1.77 16 4 N -0.42 -9.64 9.71 -184.34 -1.79 -11.43 16 5 C 0.00 0.03 6.75 41.88 0.28 0.31 16 6 C 0.58 16.91 7.81 86.87 0.68 17.59 16 7 O -0.56 -18.62 15.94 -3.77 -0.06 -18.68 16 8 N -0.68 -19.54 4.25 -457.35 -1.95 -21.49 16 9 C 0.15 4.70 3.98 42.46 0.17 4.87 16 10 H 0.11 3.21 7.46 -2.39 -0.02 3.19 16 11 C -0.16 -5.65 2.96 -14.17 -0.04 -5.69 16 12 H 0.09 3.47 6.07 -2.38 -0.01 3.45 16 13 C -0.08 -2.69 5.93 30.37 0.18 -2.51 16 14 C -0.13 -4.81 5.90 30.79 0.18 -4.63 16 15 C 0.18 8.59 5.28 85.84 0.45 9.04 16 16 N -0.58 -28.13 2.87 -689.96 -1.98 -30.11 16 17 C -0.24 -12.41 9.10 84.03 0.76 -11.65 16 18 H 0.08 4.13 5.18 -2.91 -0.02 4.11 16 19 C -0.06 -3.04 5.12 84.86 0.43 -2.61 16 20 N -0.94 -55.46 11.20 21.65 0.24 -55.21 16 21 Si 0.96 44.52 29.57 68.60 2.03 46.55 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 C 0.14 5.39 2.92 42.86 0.13 5.52 16 26 H 0.04 1.45 6.44 -2.38 -0.02 1.44 16 27 C -0.06 -2.01 1.39 -55.19 -0.08 -2.09 16 28 C -0.11 -3.59 7.31 71.98 0.53 -3.07 16 29 C -0.13 -3.76 9.12 71.98 0.66 -3.10 16 30 C 0.11 2.54 10.77 84.93 0.91 3.45 16 31 N -0.46 -9.30 10.41 -182.21 -1.90 -11.19 16 32 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.11 0.12 8.08 -2.39 -0.02 0.10 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.21 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.41 11.90 5.64 -92.71 -0.52 11.38 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.66 7.96 -2.38 -0.02 1.64 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 2.79 6.31 -2.39 -0.02 2.77 16 42 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 43 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.06 1.89 7.04 -2.39 -0.02 1.87 16 46 H 0.06 2.00 5.76 -2.39 -0.01 1.99 16 47 H 0.05 1.53 6.57 -2.39 -0.02 1.51 16 48 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.19 3.88 7.65 -2.91 -0.02 3.86 16 Total: -1.00 -68.08 387.32 2.23 -65.85 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.44 Total: 26.51 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 7.19 Total: 9.20 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -7.37 Total: -129.43 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.06 Total: -18.68 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.08 2.23 -65.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087271129.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.970 kcal (2) G-P(sol) polarization free energy of solvation -68.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds