Wall clock time and date at job start Wed Apr 1 2020 04:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38772 * 119.90607 * 2 1 4 4 N 1.31769 * 120.12320 * 179.71660 * 3 2 1 5 5 C 1.33034 * 119.92976 * 0.56112 * 4 3 2 6 6 C 1.48142 * 120.10049 * 179.74349 * 5 4 3 7 7 O 1.21517 * 120.00235 * 179.72126 * 6 5 4 8 8 N 1.34783 * 119.99716 * 359.71711 * 6 5 4 9 9 C 1.46502 * 119.99644 * 180.27819 * 8 6 5 10 10 H 1.09005 * 113.22445 * 28.02630 * 9 8 6 11 11 C 1.50010 * 114.12305 * 255.21752 * 9 8 6 12 12 H 1.08997 * 112.51049 * 322.40689 * 11 9 8 13 13 C 1.51209 * 126.15580 * 104.80571 * 11 9 8 14 14 C 1.55153 * 105.66802 * 161.77587 * 13 11 9 15 15 C 1.52500 * 112.59495 * 304.24823 * 14 13 11 16 16 N 1.48411 * 111.86777 * 46.98883 * 15 14 13 17 17 C 1.36936 * 123.16700 * 128.12601 * 16 15 14 18 18 H 1.08000 * 119.99717 * 226.11209 * 17 16 15 19 19 C 1.38807 * 120.00153 * 46.11350 * 17 16 15 20 20 N 1.31615 * 120.00389 * 207.14063 * 19 17 16 21 21 Si 1.86799 * 119.99778 * 27.14281 * 19 17 16 22 22 H 1.48495 * 109.47594 * 84.78648 * 21 19 17 23 23 H 1.48508 * 109.47161 * 204.78883 * 21 19 17 24 24 H 1.48504 * 109.47482 * 324.78348 * 21 19 17 25 25 C 1.45376 * 113.66267 * 308.16619 * 16 15 14 26 26 H 1.08997 * 112.09088 * 300.24598 * 25 16 15 27 27 C 1.49965 * 126.22403 * 155.82748 * 25 16 15 28 28 C 1.53005 * 114.08379 * 106.75726 * 27 25 16 29 29 C 1.52993 * 114.08771 * 334.33386 * 27 25 16 30 30 C 1.39405 * 119.80358 * 359.46260 * 5 4 3 31 31 N 1.32107 * 119.90342 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47074 * 269.97811 * 1 2 3 33 33 H 1.08998 * 109.47229 * 29.97974 * 1 2 3 34 34 H 1.09001 * 109.47196 * 149.98003 * 1 2 3 35 35 H 1.07996 * 119.93834 * 0.02562 * 3 2 1 36 36 H 0.96992 * 119.99786 * 359.97438 * 8 6 5 37 37 H 1.09007 * 110.09903 * 280.57221 * 13 11 9 38 38 H 1.08994 * 110.10560 * 42.23480 * 13 11 9 39 39 H 1.08996 * 108.72005 * 183.55731 * 14 13 11 40 40 H 1.09003 * 109.04912 * 65.15599 * 14 13 11 41 41 H 1.09008 * 108.99883 * 286.38302 * 15 14 13 42 42 H 1.08993 * 108.94207 * 167.56396 * 15 14 13 43 43 H 0.96998 * 120.00273 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.47011 * 173.92061 * 28 27 25 45 45 H 1.09001 * 109.46667 * 293.92377 * 28 27 25 46 46 H 1.09005 * 109.47100 * 53.92342 * 28 27 25 47 47 H 1.09007 * 109.47142 * 332.37869 * 29 27 25 48 48 H 1.08996 * 109.47313 * 92.37434 * 29 27 25 49 49 H 1.09000 * 109.47195 * 212.37893 * 29 27 25 50 50 H 1.08003 * 120.05929 * 180.28012 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2029 0.0000 4 7 3.5165 1.2079 0.0056 5 6 4.1847 0.0576 0.0000 6 6 5.6661 0.0588 0.0006 7 8 6.2746 -0.9930 0.0006 8 7 6.3390 1.2267 0.0010 9 6 7.8040 1.2279 -0.0046 10 1 8.2328 0.3452 -0.4792 11 6 8.4218 1.5743 1.3178 12 1 7.8656 2.3468 1.8487 13 6 9.0757 0.6063 2.2779 14 6 9.9437 1.4769 3.2244 15 6 10.9428 2.3466 2.4686 16 7 10.3088 3.0522 1.3272 17 6 10.4125 4.4035 1.1309 18 1 9.5341 4.9826 0.8869 19 6 11.6464 5.0288 1.2455 20 7 11.7118 6.2975 1.5898 21 14 13.2141 4.0698 0.9110 22 1 13.4990 4.0795 -0.5463 23 1 14.3444 4.6988 1.6406 24 1 13.0454 2.6686 1.3731 25 6 9.5667 2.1739 0.4377 26 1 10.2006 1.4024 0.0007 27 6 8.4378 2.5746 -0.4645 28 6 8.8088 2.6154 -1.9483 29 6 7.6750 3.8156 0.0032 30 6 3.4867 -1.1491 -0.0004 31 7 2.1656 -1.1452 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8901 -0.5135 34 1 -0.3633 -0.8898 -0.5141 35 1 1.6563 2.1367 0.0004 36 1 5.8532 2.0662 0.0006 37 1 8.3151 0.0758 2.8510 38 1 9.6963 -0.1029 1.7304 39 1 10.4901 0.8199 3.9010 40 1 9.2911 2.1213 3.8134 41 1 11.7488 1.7163 2.0927 42 1 11.3596 3.0841 3.1544 43 1 12.5741 6.7344 1.6702 44 1 7.9145 2.8075 -2.5412 45 1 9.5357 3.4093 -2.1193 46 1 9.2403 1.6582 -2.2414 47 1 7.7444 3.8974 1.0880 48 1 8.1089 4.7035 -0.4565 49 1 6.6283 3.7300 -0.2885 50 1 4.0249 -2.0855 -0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087271130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:07 Heat of formation + Delta-G solvation = 58.152590 kcal Electronic energy + Delta-G solvation = -31177.891090 eV Core-core repulsion = 27206.596136 eV Total energy + Delta-G solvation = -3971.294954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.61416 -42.15633 -39.99710 -37.03880 -35.83324 -34.80433 -34.36765 -33.86035 -32.68258 -30.90087 -29.57116 -28.60525 -27.44969 -26.50495 -25.63975 -24.69033 -23.71122 -22.59995 -21.49283 -21.09671 -20.07129 -19.24467 -18.58788 -18.47278 -17.04835 -16.94622 -16.88336 -16.56147 -16.32169 -15.69613 -15.64991 -15.36963 -15.20884 -15.02706 -14.87427 -14.55505 -14.22287 -14.10356 -13.75138 -13.68616 -13.62172 -13.33311 -13.22356 -13.08965 -12.78277 -12.74872 -12.70666 -12.65412 -12.48326 -12.27492 -12.01586 -11.97283 -11.79154 -11.60540 -11.47236 -11.36130 -11.16959 -10.63872 -10.33638 -10.28215 -10.18417 -9.91170 -8.33583 -8.16393 -5.56942 -0.71909 -0.04337 1.38099 1.45391 1.53305 1.59504 1.94861 2.50767 2.65595 2.88223 3.02588 3.05126 3.21118 3.32028 3.40678 3.66221 3.73183 3.82548 3.94746 4.00346 4.09561 4.17204 4.31688 4.43126 4.47100 4.53309 4.58955 4.61866 4.69049 4.78594 4.81491 4.85403 4.94108 4.98621 5.05014 5.06726 5.10326 5.11556 5.18701 5.20411 5.27556 5.33128 5.35562 5.43203 5.49446 5.55170 5.73538 6.00053 6.02549 6.39222 6.42330 6.63237 7.02682 7.06480 7.67351 8.32999 9.02353 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020841 B = 0.002762 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.175092 B =10135.012290 C =10532.198637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.106 3.894 3 C 0.056 3.944 4 N -0.422 5.422 5 C 0.001 3.999 6 C 0.574 3.426 7 O -0.561 6.561 8 N -0.684 5.684 9 C 0.155 3.845 10 H 0.114 0.886 11 C -0.153 4.153 12 H 0.084 0.916 13 C -0.085 4.085 14 C -0.122 4.122 15 C 0.137 3.863 16 N -0.592 5.592 17 C -0.242 4.242 18 H 0.062 0.938 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.903 3.097 22 H -0.295 1.295 23 H -0.308 1.308 24 H -0.237 1.237 25 C 0.128 3.872 26 H 0.056 0.944 27 C -0.059 4.059 28 C -0.130 4.130 29 C -0.109 4.109 30 C 0.109 3.891 31 N -0.462 5.462 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.215 0.785 36 H 0.415 0.585 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.027 0.973 42 H 0.041 0.959 43 H 0.259 0.741 44 H 0.068 0.932 45 H 0.046 0.954 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.068 0.932 50 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.161 -12.679 -3.863 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.037 4.037 3 C -0.109 4.109 4 N -0.139 5.139 5 C -0.137 4.137 6 C 0.359 3.641 7 O -0.439 6.439 8 N -0.333 5.333 9 C 0.050 3.950 10 H 0.131 0.869 11 C -0.174 4.174 12 H 0.102 0.898 13 C -0.123 4.123 14 C -0.161 4.161 15 C 0.012 3.988 16 N -0.315 5.315 17 C -0.372 4.372 18 H 0.080 0.920 19 C -0.203 4.203 20 N -0.583 5.583 21 Si 0.731 3.269 22 H -0.223 1.223 23 H -0.236 1.236 24 H -0.161 1.161 25 C 0.021 3.979 26 H 0.074 0.926 27 C -0.060 4.060 28 C -0.188 4.188 29 C -0.166 4.166 30 C -0.049 4.049 31 N -0.177 5.177 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.232 0.768 36 H 0.253 0.747 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.508 -13.249 -3.807 25.547 hybrid contribution 1.451 0.581 -0.004 1.563 sum -20.057 -12.668 -3.810 24.027 Atomic orbital electron populations 1.20941 0.84251 1.05736 1.05105 1.23394 1.00698 0.89107 0.90499 1.24394 0.89285 1.01140 0.96051 1.68320 1.10668 1.28243 1.06667 1.21927 0.94985 0.91816 1.04996 1.17904 0.85701 0.84167 0.76314 1.90769 1.69204 1.32102 1.51840 1.45813 1.07044 1.08718 1.71775 1.22226 0.78225 0.97911 0.96624 0.86860 1.23284 0.98717 0.99880 0.95565 0.89804 1.21273 0.97710 0.96432 0.96859 1.22016 0.98296 0.97900 0.97861 1.21428 0.94208 0.94205 0.88926 1.44099 1.61823 1.02897 1.22728 1.18728 0.92511 0.82175 1.43770 0.92022 1.26294 1.00485 0.95332 0.98224 1.70050 1.25536 1.13693 1.48975 0.86456 0.81019 0.81772 0.77648 1.22267 1.23614 1.16069 1.21781 0.90600 0.92715 0.92810 0.92631 1.21808 0.94818 0.93917 0.95435 1.21682 1.01436 1.01814 0.93834 1.21484 0.98528 0.95559 1.01005 1.23836 0.90394 0.99199 0.91511 1.68554 1.07867 1.30337 1.10961 0.88046 0.86893 0.89960 0.76806 0.74665 0.92348 0.91891 0.90540 0.93201 0.95548 0.94082 0.93170 0.91265 0.93502 0.91960 0.93004 0.93196 0.91372 0.80066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.49 10.19 71.23 0.73 0.24 16 2 C 0.11 1.40 6.79 42.64 0.29 1.69 16 3 C 0.06 0.73 10.88 84.83 0.92 1.65 16 4 N -0.42 -8.45 9.71 -184.34 -1.79 -10.24 16 5 C 0.00 0.03 6.75 41.88 0.28 0.32 16 6 C 0.57 15.88 7.81 86.87 0.68 16.56 16 7 O -0.56 -18.27 16.02 -3.77 -0.06 -18.33 16 8 N -0.68 -18.06 5.33 -457.28 -2.44 -20.49 16 9 C 0.16 4.55 3.46 42.47 0.15 4.70 16 10 H 0.11 3.43 7.56 -2.38 -0.02 3.42 16 11 C -0.15 -5.01 2.82 -14.17 -0.04 -5.05 16 12 H 0.08 3.01 6.06 -2.39 -0.01 2.99 16 13 C -0.09 -2.65 6.19 30.75 0.19 -2.46 16 14 C -0.12 -4.07 5.93 31.17 0.18 -3.89 16 15 C 0.14 5.64 4.54 85.85 0.39 6.03 16 16 N -0.59 -26.47 2.21 -689.89 -1.53 -27.99 16 17 C -0.24 -12.88 9.18 84.03 0.77 -12.11 16 18 H 0.06 3.51 5.50 -2.91 -0.02 3.49 16 19 C -0.01 -0.32 5.15 84.86 0.44 0.12 16 20 N -0.94 -57.29 13.97 21.65 0.30 -56.98 16 21 Si 0.90 44.66 27.44 68.60 1.88 46.54 16 22 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 23 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 24 H -0.24 -10.81 4.80 99.48 0.48 -10.33 16 25 C 0.13 4.77 3.01 42.87 0.13 4.90 16 26 H 0.06 2.08 8.01 -2.39 -0.02 2.06 16 27 C -0.06 -1.87 1.36 -55.19 -0.08 -1.94 16 28 C -0.13 -3.81 9.22 71.98 0.66 -3.15 16 29 C -0.11 -3.55 6.90 71.98 0.50 -3.05 16 30 C 0.11 2.36 10.77 84.93 0.91 3.27 16 31 N -0.46 -8.84 10.41 -182.21 -1.90 -10.73 16 32 H 0.10 0.28 8.14 -2.39 -0.02 0.27 16 33 H 0.11 -0.07 8.08 -2.39 -0.02 -0.09 16 34 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 35 H 0.22 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.41 10.08 6.08 -92.71 -0.56 9.52 16 37 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.06 1.91 8.05 -2.39 -0.02 1.89 16 39 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.03 1.09 6.42 -2.38 -0.02 1.08 16 42 H 0.04 1.85 7.41 -2.39 -0.02 1.83 16 43 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.06 1.67 8.12 -2.38 -0.02 1.65 16 47 H 0.05 1.93 5.59 -2.38 -0.01 1.92 16 48 H 0.05 1.83 7.28 -2.39 -0.02 1.82 16 49 H 0.07 1.77 6.53 -2.39 -0.02 1.75 16 50 H 0.18 3.73 7.65 -2.91 -0.02 3.71 16 Total: -1.00 -69.55 386.76 1.75 -67.80 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.17 Total: 22.60 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 7.11 Total: 7.83 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -7.35 Total: -126.44 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.06 Total: -18.33 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal Total: -69.55 1.75 -67.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087271130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.951 kcal (2) G-P(sol) polarization free energy of solvation -69.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds