Wall clock time and date at job start Wed Apr 1 2020 03:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32154 * 120.53383 * 2 1 4 4 C 1.31865 * 120.96340 * 180.33407 * 3 2 1 5 5 N 1.31883 * 122.09416 * 359.66152 * 4 3 2 6 6 C 1.32127 * 120.96641 * 0.02562 * 5 4 3 7 7 C 1.39933 * 120.53651 * 179.72464 * 2 1 3 8 8 C 1.47829 * 120.94142 * 359.96590 * 7 2 1 9 9 O 1.21557 * 119.99905 * 353.99231 * 8 7 2 10 10 N 1.34777 * 120.00229 * 173.98466 * 8 7 2 11 11 C 1.46495 * 120.00260 * 180.02562 * 10 8 7 12 12 H 1.09005 * 113.34190 * 28.42771 * 11 10 8 13 13 C 1.50004 * 114.12693 * 255.49861 * 11 10 8 14 14 H 1.09001 * 112.50837 * 170.15250 * 13 11 10 15 15 C 1.51209 * 125.53230 * 27.69378 * 13 11 10 16 16 C 1.56632 * 104.93209 * 197.95097 * 15 13 11 17 17 C 1.52496 * 112.48635 * 56.17690 * 16 15 13 18 18 N 1.48411 * 111.86586 * 312.72289 * 17 16 15 19 19 C 1.36932 * 123.16878 * 231.87682 * 18 17 16 20 20 H 1.08001 * 119.99556 * 212.28887 * 19 18 17 21 21 C 1.38813 * 119.99781 * 32.29810 * 19 18 17 22 22 N 1.31608 * 120.00508 * 19.77638 * 21 19 18 23 23 Si 1.86804 * 119.99589 * 199.77443 * 21 19 18 24 24 H 1.48505 * 109.47104 * 89.99681 * 23 21 19 25 25 H 1.48496 * 109.47176 * 210.00046 * 23 21 19 26 26 H 1.48501 * 109.47458 * 330.00072 * 23 21 19 27 27 C 1.45375 * 113.65621 * 51.84176 * 18 17 16 28 28 H 1.08995 * 112.09255 * 59.75117 * 27 18 17 29 29 C 1.49969 * 126.22183 * 204.16401 * 27 18 17 30 30 C 1.52995 * 114.08628 * 253.24641 * 29 27 18 31 31 C 1.52998 * 114.08091 * 25.49789 * 29 27 18 32 32 H 1.09006 * 109.47014 * 263.35744 * 1 2 3 33 33 H 1.08994 * 109.47445 * 23.36451 * 1 2 3 34 34 H 1.09004 * 109.47273 * 143.36492 * 1 2 3 35 35 H 1.07999 * 118.94670 * 179.68230 * 4 3 2 36 36 H 1.08000 * 120.53897 * 179.97438 * 6 5 4 37 37 H 0.96998 * 119.99380 * 0.02562 * 10 8 7 38 38 H 1.09000 * 110.09522 * 317.98225 * 15 13 11 39 39 H 1.08989 * 110.10240 * 79.64390 * 15 13 11 40 40 H 1.08997 * 109.32461 * 295.14002 * 16 15 13 41 41 H 1.09008 * 108.46542 * 176.62212 * 16 15 13 42 42 H 1.09001 * 109.00185 * 192.11076 * 17 16 15 43 43 H 1.09002 * 108.94223 * 73.29759 * 17 16 15 44 44 H 0.97005 * 120.00490 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.47105 * 60.00091 * 30 29 27 46 46 H 1.09000 * 109.47158 * 179.97438 * 30 29 27 47 47 H 1.09001 * 109.47085 * 300.00214 * 30 29 27 48 48 H 1.08997 * 109.47356 * 54.54146 * 31 29 27 49 49 H 1.09009 * 109.47025 * 174.53663 * 31 29 27 50 50 H 1.08992 * 109.47305 * 294.53476 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1383 0.0000 4 6 3.4970 1.1482 -0.0066 5 7 4.2061 0.0362 -0.0068 6 6 3.6164 -1.1462 -0.0009 7 6 2.2180 -1.2052 0.0058 8 6 1.5121 -2.5041 0.0128 9 8 0.3021 -2.5376 0.1238 10 7 2.2101 -3.6511 -0.1040 11 6 1.5106 -4.9382 -0.0977 12 1 0.4914 -4.8777 -0.4794 13 6 1.6395 -5.6998 1.1882 14 1 0.9764 -6.5639 1.2297 15 6 1.8565 -5.0881 2.5539 16 6 2.3806 -6.2650 3.4447 17 6 3.6301 -6.9216 2.8676 18 7 3.4820 -7.2152 1.4204 19 6 3.7251 -8.4486 0.8774 20 1 4.1124 -8.5293 -0.1275 21 6 3.4736 -9.5950 1.6186 22 7 2.6623 -9.5446 2.6537 23 14 4.2866 -11.2092 1.1468 24 1 5.5853 -11.3353 1.8560 25 1 3.4022 -12.3392 1.5290 26 1 4.5189 -11.2365 -0.3197 27 6 3.0537 -6.0701 0.6337 28 1 3.7563 -5.2397 0.7026 29 6 2.3417 -6.1175 -0.6853 30 6 3.2151 -5.7312 -1.8806 31 6 1.5381 -7.3990 -0.9152 32 1 -0.3633 -0.1189 1.0208 33 1 -0.3634 0.9433 -0.4075 34 1 -0.3634 -0.8247 -0.6132 35 1 4.0126 2.0971 -0.0116 36 1 4.2038 -2.0524 -0.0016 37 1 3.1757 -3.6243 -0.1923 38 1 2.5860 -4.2806 2.4909 39 1 0.9133 -4.7124 2.9503 40 1 1.5996 -7.0191 3.5420 41 1 2.6146 -5.8715 4.4340 42 1 3.8202 -7.8530 3.4010 43 1 4.4789 -6.2525 3.0090 44 1 2.4868 -10.3457 3.1719 45 1 4.0614 -6.4147 -1.9481 46 1 2.6259 -5.7914 -2.7956 47 1 3.5803 -4.7126 -1.7495 48 1 0.8463 -7.5478 -0.0862 49 1 0.9769 -7.3139 -1.8459 50 1 2.2185 -8.2482 -0.9777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087272213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:02 Heat of formation + Delta-G solvation = 87.973693 kcal Electronic energy + Delta-G solvation = -31968.778754 eV Core-core repulsion = 27998.776940 eV Total energy + Delta-G solvation = -3970.001814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.66240 -40.98067 -38.76987 -35.36204 -34.71451 -33.52597 -32.90685 -32.48403 -30.31336 -29.36013 -28.77299 -26.96354 -25.98557 -25.52275 -24.47573 -23.15455 -22.36990 -21.31868 -20.52297 -19.19885 -18.45334 -18.09724 -17.48360 -16.94543 -16.69954 -15.73075 -15.44386 -14.79394 -14.59549 -14.46050 -14.10442 -14.05532 -13.77825 -13.72751 -13.35687 -13.29332 -13.08741 -12.74440 -12.63812 -12.47877 -12.36843 -11.99969 -11.87030 -11.55566 -11.31645 -11.17836 -11.04070 -10.94306 -10.86767 -10.70799 -10.47939 -10.26115 -10.18549 -9.92894 -9.90021 -9.75953 -9.60574 -9.56818 -9.30867 -8.88760 -8.70411 -8.43625 -6.56119 -5.82670 -3.24842 0.17456 0.71098 2.72555 2.99521 3.34148 3.42190 3.43214 3.51828 3.71608 3.75675 4.05901 4.44589 4.45478 4.64381 4.71403 4.94966 4.98504 5.19621 5.21885 5.27313 5.40913 5.49357 5.55745 5.58653 5.81002 5.84422 5.86009 5.90209 5.93952 6.04404 6.07453 6.13822 6.31066 6.32418 6.37802 6.43495 6.50282 6.57300 6.59060 6.64483 6.72108 6.76025 6.91491 7.02789 7.07073 7.26223 7.40966 7.46456 7.57514 7.69456 7.77075 8.12607 8.41727 9.11314 9.78098 10.47043 11.24976 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.003083 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.044640 B = 9080.028585 C = 9146.256851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.234 3.766 3 N -0.527 5.527 4 C 0.315 3.685 5 N -0.527 5.527 6 C 0.186 3.814 7 C -0.241 4.241 8 C 0.569 3.431 9 O -0.525 6.525 10 N -0.693 5.693 11 C 0.135 3.865 12 H 0.096 0.904 13 C -0.165 4.165 14 H 0.109 0.891 15 C -0.086 4.086 16 C -0.122 4.122 17 C 0.162 3.838 18 N -0.569 5.569 19 C -0.242 4.242 20 H 0.064 0.936 21 C 0.009 3.991 22 N -0.890 5.890 23 Si 0.892 3.108 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.279 1.279 27 C 0.145 3.855 28 H 0.044 0.956 29 C -0.062 4.062 30 C -0.134 4.134 31 C -0.115 4.115 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.201 0.799 36 H 0.171 0.829 37 H 0.397 0.603 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.086 0.914 43 H -0.004 1.004 44 H 0.252 0.748 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.044 0.956 48 H 0.065 0.935 49 H 0.036 0.964 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 16.121 -5.802 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.088 3.912 3 N -0.241 5.241 4 C 0.028 3.972 5 N -0.241 5.241 6 C 0.019 3.981 7 C -0.249 4.249 8 C 0.354 3.646 9 O -0.403 6.403 10 N -0.344 5.344 11 C 0.030 3.970 12 H 0.114 0.886 13 C -0.187 4.187 14 H 0.127 0.873 15 C -0.124 4.124 16 C -0.161 4.161 17 C 0.037 3.963 18 N -0.291 5.291 19 C -0.371 4.371 20 H 0.082 0.918 21 C -0.191 4.191 22 N -0.533 5.533 23 Si 0.722 3.278 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.205 1.205 27 C 0.037 3.963 28 H 0.061 0.939 29 C -0.063 4.063 30 C -0.192 4.192 31 C -0.172 4.172 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.217 0.783 36 H 0.188 0.812 37 H 0.234 0.766 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.014 0.986 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.084 0.916 49 H 0.055 0.945 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.126 16.758 -5.615 17.709 hybrid contribution 0.696 -1.626 0.013 1.769 sum -0.431 15.131 -5.602 16.141 Atomic orbital electron populations 1.21096 0.86484 1.04363 1.04908 1.22019 0.98232 0.86454 0.84486 1.68431 1.10263 1.29757 1.15676 1.25225 0.86814 0.97278 0.87877 1.68455 1.41488 0.98921 1.15225 1.23498 0.90928 0.96738 0.86926 1.21694 0.96220 0.96479 1.10506 1.17646 0.86954 0.82899 0.77065 1.90742 1.13251 1.86884 1.49382 1.45607 1.10435 1.05337 1.73007 1.21658 0.95931 0.80834 0.98596 0.88561 1.23367 1.02823 0.99608 0.92859 0.87318 1.21485 0.98740 0.96827 0.95361 1.22255 1.01032 0.96576 0.96211 1.20767 0.91892 0.98543 0.85052 1.43778 1.78216 1.05290 1.01768 1.18872 1.36289 0.81936 1.00030 0.91830 1.25006 0.97652 0.97360 0.99082 1.70009 1.34383 1.28031 1.20852 0.86458 0.79158 0.83965 0.78173 1.21608 1.21919 1.20460 1.21769 0.91365 0.91219 0.91964 0.93922 1.21857 0.95830 0.94583 0.94069 1.21695 0.99829 1.00207 0.97460 1.21589 0.99827 0.95920 0.99909 0.89013 0.90686 0.87440 0.78271 0.81243 0.76587 0.93685 0.94047 0.91151 0.94387 0.89559 0.98631 0.93767 0.91945 0.92976 0.93699 0.91643 0.94509 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 8.96 36.01 0.32 -0.85 16 2 C 0.23 2.74 6.86 -81.82 -0.56 2.18 16 3 N -0.53 -5.87 10.36 -10.48 -0.11 -5.98 16 4 C 0.32 3.04 12.27 -92.02 -1.13 1.91 16 5 N -0.53 -5.64 10.42 -14.24 -0.15 -5.78 16 6 C 0.19 1.94 10.80 -16.78 -0.18 1.76 16 7 C -0.24 -2.83 5.91 -104.69 -0.62 -3.45 16 8 C 0.57 7.61 7.73 -12.34 -0.10 7.51 16 9 O -0.52 -8.26 13.22 5.32 0.07 -8.19 16 10 N -0.69 -8.91 4.14 -58.61 -0.24 -9.15 16 11 C 0.13 2.06 3.90 -71.83 -0.28 1.78 16 12 H 0.10 1.54 7.61 -51.93 -0.39 1.15 16 13 C -0.17 -2.96 2.95 -95.81 -0.28 -3.24 16 14 H 0.11 2.26 5.89 -51.93 -0.31 1.96 16 15 C -0.09 -1.54 6.09 -25.67 -0.16 -1.70 16 16 C -0.12 -2.43 5.97 -25.03 -0.15 -2.58 16 17 C 0.16 3.60 5.74 -3.25 -0.02 3.58 16 18 N -0.57 -12.76 2.88 -169.42 -0.49 -13.25 16 19 C -0.24 -5.97 7.56 -15.06 -0.11 -6.08 16 20 H 0.06 1.57 7.43 -52.49 -0.39 1.18 16 21 C 0.01 0.22 4.97 -17.43 -0.09 0.14 16 22 N -0.89 -23.85 11.56 55.49 0.64 -23.21 16 23 Si 0.89 20.57 29.60 -169.99 -5.03 15.54 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 27 C 0.15 2.66 2.93 -72.13 -0.21 2.45 16 28 H 0.04 0.75 6.59 -51.93 -0.34 0.41 16 29 C -0.06 -0.99 1.38 -159.14 -0.22 -1.21 16 30 C -0.13 -1.83 9.21 37.16 0.34 -1.48 16 31 C -0.12 -2.01 8.40 37.16 0.31 -1.70 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 1.24 6.00 -51.93 -0.31 0.93 16 35 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.17 1.39 6.58 -52.49 -0.35 1.04 16 37 H 0.40 4.43 4.39 -40.82 -0.18 4.25 16 38 H 0.04 0.76 7.91 -51.93 -0.41 0.35 16 39 H 0.04 0.73 8.14 -51.94 -0.42 0.31 16 40 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.09 2.17 6.02 -51.93 -0.31 1.86 16 43 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 44 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.04 0.52 6.32 -51.93 -0.33 0.19 16 48 H 0.06 1.26 5.93 -51.93 -0.31 0.95 16 49 H 0.04 0.55 8.14 -51.92 -0.42 0.12 16 50 H 0.08 1.68 6.12 -51.93 -0.32 1.37 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -28.46 381.57 -9.99 -38.45 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.31 Total: 6.80 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -3.13 Total: -0.98 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.35 Total: -57.37 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.07 Total: -8.19 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.46 -9.99 -38.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087272213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.424 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds