Wall clock time and date at job start Wed Apr 1 2020 03:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32154 * 120.53383 * 2 1 4 4 C 1.31865 * 120.96340 * 180.33407 * 3 2 1 5 5 N 1.31883 * 122.09416 * 359.66152 * 4 3 2 6 6 C 1.32127 * 120.96641 * 0.02562 * 5 4 3 7 7 C 1.39933 * 120.53651 * 179.72464 * 2 1 3 8 8 C 1.47829 * 120.94142 * 359.96590 * 7 2 1 9 9 O 1.21557 * 119.99905 * 353.99231 * 8 7 2 10 10 N 1.34777 * 120.00229 * 173.98466 * 8 7 2 11 11 C 1.46495 * 120.00260 * 180.02562 * 10 8 7 12 12 H 1.09005 * 113.34190 * 28.42771 * 11 10 8 13 13 C 1.50004 * 114.12693 * 255.49861 * 11 10 8 14 14 H 1.09001 * 112.50837 * 170.15250 * 13 11 10 15 15 C 1.51209 * 125.53230 * 27.69378 * 13 11 10 16 16 C 1.56632 * 104.93209 * 197.95097 * 15 13 11 17 17 C 1.52496 * 112.48635 * 56.17690 * 16 15 13 18 18 N 1.48411 * 111.86586 * 312.72289 * 17 16 15 19 19 C 1.36932 * 123.16878 * 231.87682 * 18 17 16 20 20 H 1.08001 * 119.99556 * 212.28887 * 19 18 17 21 21 C 1.38813 * 119.99781 * 32.29810 * 19 18 17 22 22 N 1.31608 * 120.00508 * 19.77638 * 21 19 18 23 23 Si 1.86804 * 119.99589 * 199.77443 * 21 19 18 24 24 H 1.48505 * 109.47104 * 89.99681 * 23 21 19 25 25 H 1.48496 * 109.47176 * 210.00046 * 23 21 19 26 26 H 1.48501 * 109.47458 * 330.00072 * 23 21 19 27 27 C 1.45375 * 113.65621 * 51.84176 * 18 17 16 28 28 H 1.08995 * 112.09255 * 59.75117 * 27 18 17 29 29 C 1.49969 * 126.22183 * 204.16401 * 27 18 17 30 30 C 1.52995 * 114.08628 * 253.24641 * 29 27 18 31 31 C 1.52998 * 114.08091 * 25.49789 * 29 27 18 32 32 H 1.09006 * 109.47014 * 263.35744 * 1 2 3 33 33 H 1.08994 * 109.47445 * 23.36451 * 1 2 3 34 34 H 1.09004 * 109.47273 * 143.36492 * 1 2 3 35 35 H 1.07999 * 118.94670 * 179.68230 * 4 3 2 36 36 H 1.08000 * 120.53897 * 179.97438 * 6 5 4 37 37 H 0.96998 * 119.99380 * 0.02562 * 10 8 7 38 38 H 1.09000 * 110.09522 * 317.98225 * 15 13 11 39 39 H 1.08989 * 110.10240 * 79.64390 * 15 13 11 40 40 H 1.08997 * 109.32461 * 295.14002 * 16 15 13 41 41 H 1.09008 * 108.46542 * 176.62212 * 16 15 13 42 42 H 1.09001 * 109.00185 * 192.11076 * 17 16 15 43 43 H 1.09002 * 108.94223 * 73.29759 * 17 16 15 44 44 H 0.97005 * 120.00490 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.47105 * 60.00091 * 30 29 27 46 46 H 1.09000 * 109.47158 * 179.97438 * 30 29 27 47 47 H 1.09001 * 109.47085 * 300.00214 * 30 29 27 48 48 H 1.08997 * 109.47356 * 54.54146 * 31 29 27 49 49 H 1.09009 * 109.47025 * 174.53663 * 31 29 27 50 50 H 1.08992 * 109.47305 * 294.53476 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1383 0.0000 4 6 3.4970 1.1482 -0.0066 5 7 4.2061 0.0362 -0.0068 6 6 3.6164 -1.1462 -0.0009 7 6 2.2180 -1.2052 0.0058 8 6 1.5121 -2.5041 0.0128 9 8 0.3021 -2.5376 0.1238 10 7 2.2101 -3.6511 -0.1040 11 6 1.5106 -4.9382 -0.0977 12 1 0.4914 -4.8777 -0.4794 13 6 1.6395 -5.6998 1.1882 14 1 0.9764 -6.5639 1.2297 15 6 1.8565 -5.0881 2.5539 16 6 2.3806 -6.2650 3.4447 17 6 3.6301 -6.9216 2.8676 18 7 3.4820 -7.2152 1.4204 19 6 3.7251 -8.4486 0.8774 20 1 4.1124 -8.5293 -0.1275 21 6 3.4736 -9.5950 1.6186 22 7 2.6623 -9.5446 2.6537 23 14 4.2866 -11.2092 1.1468 24 1 5.5853 -11.3353 1.8560 25 1 3.4022 -12.3392 1.5290 26 1 4.5189 -11.2365 -0.3197 27 6 3.0537 -6.0701 0.6337 28 1 3.7563 -5.2397 0.7026 29 6 2.3417 -6.1175 -0.6853 30 6 3.2151 -5.7312 -1.8806 31 6 1.5381 -7.3990 -0.9152 32 1 -0.3633 -0.1189 1.0208 33 1 -0.3634 0.9433 -0.4075 34 1 -0.3634 -0.8247 -0.6132 35 1 4.0126 2.0971 -0.0116 36 1 4.2038 -2.0524 -0.0016 37 1 3.1757 -3.6243 -0.1923 38 1 2.5860 -4.2806 2.4909 39 1 0.9133 -4.7124 2.9503 40 1 1.5996 -7.0191 3.5420 41 1 2.6146 -5.8715 4.4340 42 1 3.8202 -7.8530 3.4010 43 1 4.4789 -6.2525 3.0090 44 1 2.4868 -10.3457 3.1719 45 1 4.0614 -6.4147 -1.9481 46 1 2.6259 -5.7914 -2.7956 47 1 3.5803 -4.7126 -1.7495 48 1 0.8463 -7.5478 -0.0862 49 1 0.9769 -7.3139 -1.8459 50 1 2.2185 -8.2482 -0.9777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087272213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:01 Heat of formation + Delta-G solvation = 72.921641 kcal Electronic energy + Delta-G solvation = -31969.431460 eV Core-core repulsion = 27998.776940 eV Total energy + Delta-G solvation = -3970.654520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.73830 -42.08705 -39.88536 -36.90024 -35.62063 -34.65267 -34.51429 -33.48886 -32.06296 -30.72618 -29.67045 -28.30186 -27.49053 -26.74029 -25.79530 -24.08599 -23.83329 -22.50914 -22.01790 -20.65489 -19.77864 -19.02018 -18.54668 -18.37313 -17.74628 -16.96082 -16.57224 -16.34254 -15.80604 -15.73701 -15.50382 -15.36979 -15.16457 -14.88144 -14.64535 -14.25085 -14.14624 -14.10800 -13.92621 -13.89153 -13.46905 -13.25426 -13.14606 -12.89805 -12.76327 -12.73096 -12.65375 -12.54936 -12.26171 -12.09243 -12.04452 -11.69290 -11.62953 -11.46039 -11.22467 -10.84974 -10.78585 -10.75372 -10.55764 -10.40099 -10.23400 -9.92017 -8.39304 -7.77074 -5.19087 -0.64359 -0.09422 1.47650 1.51879 1.57040 1.74783 1.91630 2.56671 2.69011 2.96514 3.04611 3.26919 3.29427 3.41598 3.51249 3.57682 3.77313 3.79155 3.95649 4.17175 4.28129 4.33204 4.41922 4.43285 4.49262 4.61408 4.66972 4.69722 4.77770 4.80161 4.81988 4.92260 4.98333 5.04221 5.07897 5.14387 5.18713 5.21444 5.24896 5.34463 5.35151 5.42032 5.54852 5.62332 5.66234 5.72601 5.79507 5.80580 5.89882 6.41916 6.51851 6.91818 7.09620 7.20369 7.92307 8.59357 9.28557 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.003083 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.044640 B = 9080.028585 C = 9146.256851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.226 3.774 3 N -0.538 5.538 4 C 0.318 3.682 5 N -0.537 5.537 6 C 0.193 3.807 7 C -0.253 4.253 8 C 0.574 3.426 9 O -0.551 6.551 10 N -0.685 5.685 11 C 0.158 3.842 12 H 0.092 0.908 13 C -0.163 4.163 14 H 0.074 0.926 15 C -0.076 4.076 16 C -0.113 4.113 17 C 0.164 3.836 18 N -0.583 5.583 19 C -0.230 4.230 20 H 0.064 0.936 21 C -0.040 4.040 22 N -0.918 5.918 23 Si 0.943 3.057 24 H -0.293 1.293 25 H -0.303 1.303 26 H -0.269 1.269 27 C 0.136 3.864 28 H 0.064 0.936 29 C -0.059 4.059 30 C -0.129 4.129 31 C -0.110 4.110 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.235 0.765 36 H 0.193 0.807 37 H 0.409 0.591 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.035 0.965 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.009 0.991 44 H 0.243 0.757 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.038 0.962 49 H 0.062 0.938 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 18.781 -7.344 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.080 3.920 3 N -0.253 5.253 4 C 0.032 3.968 5 N -0.251 5.251 6 C 0.026 3.974 7 C -0.261 4.261 8 C 0.361 3.639 9 O -0.430 6.430 10 N -0.336 5.336 11 C 0.052 3.948 12 H 0.110 0.890 13 C -0.185 4.185 14 H 0.092 0.908 15 C -0.114 4.114 16 C -0.152 4.152 17 C 0.039 3.961 18 N -0.305 5.305 19 C -0.360 4.360 20 H 0.082 0.918 21 C -0.237 4.237 22 N -0.564 5.564 23 Si 0.774 3.226 24 H -0.221 1.221 25 H -0.231 1.231 26 H -0.194 1.194 27 C 0.029 3.971 28 H 0.082 0.918 29 C -0.060 4.060 30 C -0.187 4.187 31 C -0.167 4.167 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.251 0.749 36 H 0.209 0.791 37 H 0.248 0.752 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.027 0.973 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.057 0.943 49 H 0.081 0.919 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.207 19.450 -7.184 20.735 hybrid contribution 0.298 -2.357 0.492 2.426 sum 0.505 17.093 -6.692 18.363 Atomic orbital electron populations 1.21033 0.86239 1.04578 1.04562 1.22202 0.98707 0.86825 0.84273 1.68507 1.11009 1.29410 1.16383 1.25958 0.86489 0.98387 0.85933 1.68566 1.41575 0.99221 1.15780 1.23848 0.90455 0.97620 0.85485 1.21507 0.96775 0.95371 1.12436 1.17842 0.86612 0.83341 0.76106 1.90745 1.14537 1.87272 1.50441 1.45422 1.10883 1.04257 1.73071 1.21252 0.95944 0.81479 0.96133 0.89010 1.23207 1.01871 0.99285 0.94097 0.90810 1.21389 0.99118 0.96153 0.94692 1.22106 0.99027 0.96489 0.97618 1.20681 0.93239 0.97268 0.84950 1.43944 1.78496 1.05726 1.02377 1.19043 1.34386 0.82907 0.99651 0.91842 1.25553 0.98703 0.99735 0.99693 1.70147 1.36173 1.27927 1.22126 0.85631 0.77748 0.81030 0.78222 1.22097 1.23056 1.19382 1.22084 0.91657 0.90091 0.93247 0.91842 1.21793 0.95658 0.94188 0.94372 1.21661 0.99081 1.01311 0.96606 1.21467 0.99149 0.95917 1.00184 0.89267 0.89358 0.88611 0.74942 0.79052 0.75244 0.91826 0.93884 0.94608 0.92677 0.93061 0.97264 0.94742 0.92843 0.91509 0.91253 0.94301 0.91901 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 8.96 71.24 0.64 -1.47 16 2 C 0.23 4.80 6.86 42.92 0.29 5.10 16 3 N -0.54 -10.60 10.36 -187.06 -1.94 -12.54 16 4 C 0.32 5.11 12.27 180.84 2.22 7.33 16 5 N -0.54 -9.65 10.42 -198.97 -2.07 -11.73 16 6 C 0.19 3.36 10.80 85.07 0.92 4.28 16 7 C -0.25 -5.27 5.91 -19.91 -0.12 -5.39 16 8 C 0.57 14.00 7.73 86.78 0.67 14.67 16 9 O -0.55 -16.54 13.22 -3.89 -0.05 -16.59 16 10 N -0.68 -15.59 4.14 -457.63 -1.89 -17.48 16 11 C 0.16 4.54 3.90 42.47 0.17 4.70 16 12 H 0.09 2.81 7.61 -2.38 -0.02 2.79 16 13 C -0.16 -5.76 2.95 -14.16 -0.04 -5.80 16 14 H 0.07 3.18 5.89 -2.39 -0.01 3.17 16 15 C -0.08 -2.62 6.09 31.28 0.19 -2.43 16 16 C -0.11 -4.56 5.97 31.70 0.19 -4.37 16 17 C 0.16 7.32 5.74 85.84 0.49 7.82 16 18 N -0.58 -26.22 2.88 -689.92 -1.99 -28.20 16 19 C -0.23 -11.44 7.56 84.03 0.64 -10.81 16 20 H 0.06 3.14 7.43 -2.91 -0.02 3.11 16 21 C -0.04 -2.12 4.97 84.86 0.42 -1.70 16 22 N -0.92 -51.39 11.56 21.65 0.25 -51.14 16 23 Si 0.94 43.24 29.60 68.60 2.03 45.27 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 C 0.14 4.81 2.93 42.87 0.13 4.93 16 28 H 0.06 2.02 6.59 -2.39 -0.02 2.00 16 29 C -0.06 -1.79 1.38 -55.18 -0.08 -1.86 16 30 C -0.13 -3.10 9.21 71.98 0.66 -2.44 16 31 C -0.11 -3.82 8.40 71.98 0.60 -3.21 16 32 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 2.13 6.00 -2.39 -0.01 2.12 16 35 H 0.23 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.19 2.30 6.58 -2.91 -0.02 2.28 16 37 H 0.41 7.46 4.39 -92.71 -0.41 7.06 16 38 H 0.06 1.98 7.91 -2.39 -0.02 1.96 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.05 2.67 6.02 -2.39 -0.01 2.65 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.24 13.55 8.31 -92.70 -0.77 12.78 16 45 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.07 1.31 6.32 -2.39 -0.02 1.30 16 48 H 0.04 1.54 5.93 -2.39 -0.01 1.53 16 49 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 50 H 0.06 2.36 6.12 -2.39 -0.01 2.34 16 Total: -1.00 -63.29 381.57 2.90 -60.40 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.56 Total: 22.66 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 7.99 Total: 9.35 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -7.64 Total: -121.09 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.05 Total: -16.59 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -63.29 2.90 -60.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087272213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.319 kcal (2) G-P(sol) polarization free energy of solvation -63.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds