Wall clock time and date at job start Wed Apr 1 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38823 * 120.41903 * 2 1 4 4 C 1.38783 * 118.50845 * 180.02562 * 3 2 1 5 5 N 1.32117 * 119.16302 * 359.97438 * 4 3 2 6 6 C 1.32444 * 120.77308 * 0.02562 * 5 4 3 7 7 C 1.48539 * 119.18984 * 179.97438 * 6 5 4 8 8 O 1.21472 * 120.00364 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99581 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99562 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.87063 * 20.77397 * 10 9 7 12 12 C 1.54152 * 113.63803 * 249.49709 * 10 9 7 13 13 H 1.09002 * 114.24798 * 104.29080 * 12 10 9 14 14 C 1.53062 * 111.68592 * 333.51173 * 12 10 9 15 15 C 1.53010 * 109.39494 * 213.58121 * 14 12 10 16 16 C 1.52933 * 108.93462 * 64.66750 * 15 14 12 17 17 N 1.45890 * 109.88774 * 302.64670 * 16 15 14 18 18 C 1.36945 * 118.48330 * 219.34524 * 17 16 15 19 19 H 1.07999 * 119.99828 * 150.37419 * 18 17 16 20 20 C 1.38812 * 119.99882 * 330.36906 * 18 17 16 21 21 N 1.31611 * 120.00209 * 349.27260 * 20 18 17 22 22 Si 1.86804 * 119.99501 * 169.27655 * 20 18 17 23 23 H 1.48499 * 109.47182 * 59.99887 * 22 20 18 24 24 H 1.48508 * 109.46719 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46861 * 299.99399 * 22 20 18 26 26 C 1.45087 * 123.03256 * 39.32412 * 17 16 15 27 27 H 1.08998 * 111.58541 * 203.58732 * 26 17 16 28 28 C 1.53389 * 114.62768 * 73.76999 * 26 17 16 29 29 C 1.53011 * 113.68240 * 102.24657 * 28 26 17 30 30 C 1.52995 * 113.69068 * 331.11608 * 28 26 17 31 31 N 1.32096 * 120.41941 * 180.27628 * 2 1 3 32 32 H 1.08992 * 109.47484 * 89.99746 * 1 2 3 33 33 H 1.09001 * 109.46838 * 210.00159 * 1 2 3 34 34 H 1.09000 * 109.46849 * 329.99663 * 1 2 3 35 35 H 1.08002 * 120.74484 * 0.02562 * 3 2 1 36 36 H 1.07999 * 120.41350 * 180.02562 * 4 3 2 37 37 H 0.96998 * 120.00588 * 359.97438 * 9 7 6 38 38 H 1.08993 * 109.48207 * 333.58032 * 14 12 10 39 39 H 1.09003 * 109.48137 * 93.62119 * 14 12 10 40 40 H 1.09000 * 109.56773 * 304.82097 * 15 14 12 41 41 H 1.09003 * 109.64247 * 184.55250 * 15 14 12 42 42 H 1.09001 * 109.40248 * 182.52047 * 16 15 14 43 43 H 1.08998 * 109.40551 * 62.77446 * 16 15 14 44 44 H 0.97003 * 120.00084 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.47169 * 176.53423 * 29 28 26 46 46 H 1.08997 * 109.47107 * 296.53491 * 29 28 26 47 47 H 1.09005 * 109.46861 * 56.53577 * 29 28 26 48 48 H 1.08998 * 109.46864 * 335.14273 * 30 28 26 49 49 H 1.08999 * 109.47143 * 95.14088 * 30 28 26 50 50 H 1.09000 * 109.47509 * 215.14492 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5970 1.1509 -0.0005 5 7 4.2019 -0.0237 -0.0005 6 6 3.5006 -1.1472 -0.0005 7 6 4.2170 -2.4484 -0.0011 8 8 3.5885 -3.4878 -0.0006 9 7 5.5645 -2.4757 -0.0011 10 6 6.2711 -3.7590 -0.0011 11 1 5.6528 -4.5830 -0.3573 12 6 7.0025 -4.0619 1.3217 13 1 6.5028 -4.7984 1.9510 14 6 7.3855 -2.7787 2.0629 15 6 8.7067 -2.9949 2.8037 16 6 9.8167 -3.2343 1.7793 17 7 9.4774 -4.3767 0.9378 18 6 10.4747 -5.2455 0.5830 19 1 10.2457 -6.2852 0.4014 20 6 11.7798 -4.7898 0.4566 21 7 12.0297 -3.4977 0.4682 22 14 13.1813 -6.0107 0.2700 23 1 12.9667 -6.8278 -0.9512 24 1 14.4663 -5.2752 0.1548 25 1 13.2251 -6.8994 1.4590 26 6 8.1321 -4.6351 0.4598 27 1 7.9875 -5.6882 0.2188 28 6 7.6605 -3.6983 -0.6595 29 6 7.7091 -4.3310 -2.0518 30 6 8.3033 -2.3107 -0.6115 31 7 2.1758 -1.1391 -0.0055 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6890 2.1432 0.0004 36 1 4.1744 2.0635 -0.0001 37 1 6.0665 -1.6457 -0.0011 38 1 7.4989 -1.9651 1.3464 39 1 6.6041 -2.5258 2.7796 40 1 8.6206 -3.8623 3.4581 41 1 8.9425 -2.1118 3.3976 42 1 10.7532 -3.4337 2.3001 43 1 9.9320 -2.3473 1.1563 44 1 12.9416 -3.1793 0.3795 45 1 7.3038 -3.6317 -2.7831 46 1 8.7420 -4.5665 -2.3080 47 1 7.1160 -5.2456 -2.0561 48 1 8.6197 -2.0920 0.4083 49 1 9.1692 -2.2884 -1.2732 50 1 7.5791 -1.5633 -0.9354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087282105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:20 Heat of formation + Delta-G solvation = 77.582460 kcal Electronic energy + Delta-G solvation = -31554.251910 eV Core-core repulsion = 27583.799499 eV Total energy + Delta-G solvation = -3970.452411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.53892 -40.80283 -38.61501 -35.23542 -34.86595 -33.13322 -32.81563 -32.75465 -30.25480 -29.92443 -28.93460 -26.86498 -26.21096 -25.39997 -24.09118 -23.43585 -22.38741 -21.45270 -20.12470 -19.43246 -18.24540 -17.97137 -17.12706 -16.83791 -16.19158 -15.82687 -15.60513 -15.12262 -14.83434 -14.68526 -14.37807 -14.08532 -13.76219 -13.60718 -13.29587 -13.19906 -13.14206 -12.74706 -12.63387 -12.44866 -12.27503 -11.88307 -11.57352 -11.47952 -11.36860 -11.07449 -11.00343 -10.93285 -10.78783 -10.69174 -10.38667 -10.23908 -10.09628 -9.96063 -9.91857 -9.67713 -9.60415 -9.55599 -9.33472 -9.11019 -8.53274 -8.33863 -6.57034 -5.75095 -3.22733 0.20316 0.73055 2.60133 2.81034 3.39401 3.44658 3.46233 3.65132 3.67174 4.00713 4.13552 4.50848 4.56145 4.64836 4.92587 5.02967 5.04909 5.10583 5.12010 5.32331 5.34941 5.38667 5.51567 5.53246 5.65688 5.74189 5.90146 5.94902 5.99849 6.04975 6.17393 6.23617 6.25067 6.33458 6.46575 6.51889 6.61752 6.61827 6.62871 6.68211 6.77451 6.82748 6.87409 7.02912 7.10152 7.25106 7.46546 7.50045 7.78047 7.82244 7.86205 8.27191 8.50838 9.28945 9.92702 10.37727 11.30672 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024255 B = 0.002732 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.131432 B =10246.697991 C =10492.821200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.170 3.830 3 C -0.215 4.215 4 C 0.149 3.851 5 N -0.498 5.498 6 C 0.294 3.706 7 C 0.578 3.422 8 O -0.512 6.512 9 N -0.683 5.683 10 C 0.122 3.878 11 H 0.111 0.889 12 C -0.131 4.131 13 H 0.073 0.927 14 C -0.103 4.103 15 C -0.145 4.145 16 C 0.179 3.821 17 N -0.568 5.568 18 C -0.260 4.260 19 H 0.064 0.936 20 C 0.009 3.991 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.285 1.285 26 C 0.189 3.811 27 H 0.076 0.924 28 C -0.110 4.110 29 C -0.125 4.125 30 C -0.139 4.139 31 N -0.471 5.471 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.152 0.848 36 H 0.177 0.823 37 H 0.412 0.588 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.040 0.960 44 H 0.253 0.747 45 H 0.039 0.961 46 H 0.064 0.936 47 H 0.046 0.954 48 H 0.095 0.905 49 H 0.062 0.938 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.249 11.961 -0.517 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.023 3.977 3 C -0.237 4.237 4 C -0.017 4.017 5 N -0.215 5.215 6 C 0.023 3.977 7 C 0.359 3.641 8 O -0.385 6.385 9 N -0.335 5.335 10 C 0.017 3.983 11 H 0.129 0.871 12 C -0.152 4.152 13 H 0.091 0.909 14 C -0.140 4.140 15 C -0.184 4.184 16 C 0.054 3.946 17 N -0.285 5.285 18 C -0.390 4.390 19 H 0.081 0.919 20 C -0.189 4.189 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.078 3.922 27 H 0.094 0.906 28 C -0.115 4.115 29 C -0.183 4.183 30 C -0.195 4.195 31 N -0.187 5.187 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.170 0.830 36 H 0.194 0.806 37 H 0.251 0.749 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.114 0.886 49 H 0.081 0.919 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -18.007 10.394 -0.516 20.798 hybrid contribution 0.503 0.819 -0.230 0.989 sum -17.503 11.213 -0.746 20.800 Atomic orbital electron populations 1.20815 0.87292 1.04360 1.03954 1.21896 0.97985 0.87844 0.89974 1.23006 0.96683 1.00668 1.03320 1.23321 0.92198 0.96086 0.90079 1.68337 1.41615 0.98853 1.12695 1.23093 0.87402 0.93227 0.93942 1.17316 0.82823 0.85710 0.78259 1.90784 1.66961 1.32022 1.48739 1.45940 1.04673 1.11184 1.71734 1.23000 0.91918 0.85043 0.98297 0.87072 1.23273 0.98051 0.98186 0.95678 0.90877 1.21467 0.97079 0.96796 0.98657 1.22086 0.96815 1.00152 0.99343 1.20646 0.94018 0.90054 0.89868 1.43163 1.02559 1.28298 1.54515 1.19180 0.87480 0.90165 1.42197 0.91863 1.25070 0.98309 0.95570 0.99996 1.70003 1.19212 1.11548 1.53963 0.86394 0.81780 0.80535 0.78131 1.20956 1.21743 1.21105 1.21057 0.84969 0.95875 0.90304 0.90604 1.23023 0.92700 0.98865 0.96895 1.21616 1.02041 0.99029 0.95597 1.22021 0.99170 0.93232 1.05097 1.68123 1.08689 1.30377 1.11482 0.89424 0.89555 0.89883 0.82995 0.80642 0.74929 0.90804 0.93904 0.92848 0.93045 0.91350 0.94276 0.93679 0.94210 0.91702 0.93475 0.88648 0.91896 0.95073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.22 36.01 0.37 -0.27 16 2 C 0.17 1.64 6.82 -82.26 -0.56 1.08 16 3 C -0.21 -1.54 9.87 -39.16 -0.39 -1.93 16 4 C 0.15 1.26 11.30 -17.23 -0.19 1.07 16 5 N -0.50 -6.15 9.57 -11.12 -0.11 -6.25 16 6 C 0.29 4.32 7.60 -157.07 -1.19 3.13 16 7 C 0.58 9.72 7.85 -12.01 -0.09 9.63 16 8 O -0.51 -10.07 16.43 5.39 0.09 -9.98 16 9 N -0.68 -10.73 4.35 -53.51 -0.23 -10.96 16 10 C 0.12 2.06 3.66 -66.88 -0.24 1.81 16 11 H 0.11 1.94 7.28 -51.93 -0.38 1.56 16 12 C -0.13 -2.32 4.29 -89.88 -0.39 -2.71 16 13 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 14 C -0.10 -1.75 4.66 -26.69 -0.12 -1.87 16 15 C -0.15 -2.71 6.03 -26.76 -0.16 -2.87 16 16 C 0.18 4.04 3.98 -4.41 -0.02 4.02 16 17 N -0.57 -13.27 2.66 -166.87 -0.44 -13.71 16 18 C -0.26 -6.81 9.43 -15.06 -0.14 -6.95 16 19 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 20 C 0.01 0.25 4.98 -17.43 -0.09 0.16 16 21 N -0.90 -24.85 10.94 55.49 0.61 -24.25 16 22 Si 0.90 21.30 29.57 -169.99 -5.03 16.27 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.19 3.80 3.54 -68.39 -0.24 3.55 16 27 H 0.08 1.55 7.93 -51.93 -0.41 1.14 16 28 C -0.11 -1.99 1.35 -153.85 -0.21 -2.20 16 29 C -0.13 -2.18 9.11 37.16 0.34 -1.84 16 30 C -0.14 -2.54 7.02 37.16 0.26 -2.28 16 31 N -0.47 -6.59 10.07 -7.37 -0.07 -6.66 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.27 8.10 -51.93 -0.42 -0.15 16 35 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.41 6.13 4.87 -40.82 -0.20 5.93 16 38 H 0.07 1.24 3.65 -51.93 -0.19 1.05 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.75 6.62 -51.93 -0.34 1.41 16 43 H 0.04 0.94 5.58 -51.93 -0.29 0.65 16 44 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.05 0.75 8.02 -51.93 -0.42 0.34 16 48 H 0.10 1.84 1.93 -51.93 -0.10 1.74 16 49 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 50 H 0.03 0.49 6.38 -51.93 -0.33 0.16 16 LS Contribution 382.39 15.07 5.76 5.76 Total: -1.00 -31.30 382.39 -9.77 -41.08 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.27 Total: 7.17 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -3.08 Total: 1.54 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.25 Total: -61.83 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.30 -9.77 -41.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087282105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.658 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds