Wall clock time and date at job start Wed Apr 1 2020 03:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38811 * 120.42644 * 2 1 4 4 C 1.39495 * 118.25979 * 180.23587 * 3 2 1 5 5 C 1.48455 * 120.54503 * 179.75811 * 4 3 2 6 6 O 1.21474 * 120.00631 * 359.71942 * 5 4 3 7 7 N 1.34785 * 119.99758 * 179.72327 * 5 4 3 8 8 C 1.46501 * 119.99600 * 179.97438 * 7 5 4 9 9 H 1.08998 * 112.87006 * 26.76021 * 8 7 5 10 10 C 1.54152 * 113.63448 * 255.49087 * 8 7 5 11 11 H 1.08998 * 114.24891 * 26.69092 * 10 8 7 12 12 C 1.53068 * 112.17769 * 157.41350 * 10 8 7 13 13 C 1.53023 * 109.40872 * 146.64299 * 12 10 8 14 14 C 1.53880 * 108.23904 * 294.51574 * 13 12 10 15 15 N 1.45890 * 109.31991 * 58.66152 * 14 13 12 16 16 C 1.36936 * 118.48865 * 139.72485 * 15 14 13 17 17 H 1.07996 * 120.00961 * 204.17128 * 16 15 14 18 18 C 1.38820 * 119.99650 * 24.17194 * 16 15 14 19 19 N 1.31611 * 119.99860 * 33.98659 * 18 16 15 20 20 Si 1.86805 * 119.99795 * 213.98876 * 18 16 15 21 21 H 1.48497 * 109.46877 * 179.97438 * 20 18 16 22 22 H 1.48496 * 109.46903 * 299.99834 * 20 18 16 23 23 H 1.48506 * 109.47025 * 60.00223 * 20 18 16 24 24 C 1.45097 * 123.03144 * 319.44691 * 15 14 13 25 25 H 1.09000 * 112.25817 * 157.37057 * 24 15 14 26 26 C 1.53377 * 114.62704 * 286.52002 * 24 15 14 27 27 C 1.53000 * 113.68836 * 257.75151 * 26 24 15 28 28 C 1.53001 * 113.69232 * 28.88888 * 26 24 15 29 29 N 1.33099 * 118.90438 * 359.48125 * 4 3 2 30 30 C 1.31551 * 120.73459 * 0.27975 * 29 4 3 31 31 N 1.31905 * 121.92150 * 359.97391 * 30 29 4 32 32 H 1.08997 * 109.47125 * 270.28402 * 1 2 3 33 33 H 1.09004 * 109.46699 * 30.28505 * 1 2 3 34 34 H 1.08996 * 109.46613 * 150.28477 * 1 2 3 35 35 H 1.07995 * 120.86677 * 0.02562 * 3 2 1 36 36 H 0.96993 * 119.99570 * 359.97438 * 7 5 4 37 37 H 1.09000 * 109.48133 * 266.62130 * 12 10 8 38 38 H 1.08994 * 109.48152 * 26.65608 * 12 10 8 39 39 H 1.09000 * 109.56005 * 55.18831 * 13 12 10 40 40 H 1.09004 * 109.55943 * 175.40465 * 13 12 10 41 41 H 1.08998 * 110.45199 * 298.23880 * 14 13 12 42 42 H 1.09002 * 108.92625 * 178.15122 * 14 13 12 43 43 H 0.97001 * 120.00379 * 5.76752 * 19 18 16 44 44 H 1.09004 * 109.46882 * 59.99961 * 27 26 24 45 45 H 1.08996 * 109.47487 * 180.02562 * 27 26 24 46 46 H 1.08997 * 109.47187 * 300.00462 * 27 26 24 47 47 H 1.08998 * 109.46789 * 27.24659 * 28 26 24 48 48 H 1.08998 * 109.47879 * 147.24893 * 28 26 24 49 49 H 1.09004 * 109.46617 * 267.25247 * 28 26 24 50 50 H 1.08004 * 119.04073 * 180.02562 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6040 1.1442 -0.0051 5 6 4.4062 2.3933 -0.0107 6 8 3.8494 3.4729 -0.0161 7 7 5.7525 2.3295 -0.0099 8 6 6.5442 3.5622 -0.0161 9 1 6.0184 4.4055 0.4316 10 6 7.1763 3.8839 -1.3847 11 1 6.6319 3.4758 -2.2363 12 6 7.5069 5.3710 -1.5332 13 6 8.7663 5.5291 -2.3879 14 6 9.9506 4.9187 -1.6180 15 7 9.6729 3.5137 -1.3400 16 6 10.6936 2.6093 -1.4633 17 1 10.4737 1.5691 -1.6528 18 6 12.0114 3.0296 -1.3448 19 7 12.3190 4.0049 -0.5164 20 14 13.3479 2.2106 -2.3610 21 1 14.6582 2.8378 -2.0530 22 1 13.4020 0.7633 -2.0333 23 1 13.0457 2.3804 -3.8051 24 6 8.3664 3.0313 -0.9331 25 1 8.2326 1.9710 -1.1475 26 6 7.9783 3.3769 0.5100 27 6 8.1293 2.2069 1.4842 28 6 8.6156 4.6689 1.0253 29 7 4.2028 -0.0444 0.0009 30 6 3.4955 -1.1536 0.0058 31 7 2.1765 -1.1397 0.0057 32 1 -0.3633 0.0051 1.0276 33 1 -0.3633 0.8875 -0.5183 34 1 -0.3632 -0.8925 -0.5094 35 1 1.6913 2.1442 0.0004 36 1 6.1971 1.4675 -0.0053 37 1 6.6738 5.8822 -2.0156 38 1 7.6790 5.8053 -0.5485 39 1 8.6262 5.0206 -3.3418 40 1 8.9578 6.5877 -2.5634 41 1 10.1085 5.4492 -0.6791 42 1 10.8484 4.9958 -2.2313 43 1 11.6415 4.3736 0.0718 44 1 9.1681 1.8769 1.4976 45 1 7.8363 2.5265 2.4842 46 1 7.4907 1.3834 1.1647 47 1 8.8171 5.3345 0.1860 48 1 7.9340 5.1579 1.7213 49 1 9.5499 4.4347 1.5357 50 1 4.0097 -2.1033 0.0110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087282342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:24 Heat of formation + Delta-G solvation = 69.646384 kcal Electronic energy + Delta-G solvation = -31396.588681 eV Core-core repulsion = 27425.792136 eV Total energy + Delta-G solvation = -3970.796546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.59471 -40.92600 -38.93929 -35.60629 -34.92623 -33.37820 -32.94844 -32.62387 -30.26137 -29.97403 -29.04223 -27.01058 -26.10695 -25.13398 -24.25903 -23.67777 -22.58922 -21.25826 -20.66612 -19.48854 -18.54967 -17.92486 -17.40804 -17.14957 -15.96761 -15.81458 -15.76799 -15.65567 -14.83260 -14.80482 -14.34586 -14.14242 -13.88448 -13.58413 -13.53900 -13.35246 -13.28041 -12.94657 -12.81773 -12.73136 -12.24059 -12.04688 -11.82501 -11.55692 -11.50446 -11.29509 -11.21985 -10.89222 -10.73148 -10.68193 -10.54593 -10.26096 -10.11731 -9.97565 -9.96485 -9.83011 -9.77489 -9.61678 -9.50486 -9.11161 -8.72264 -8.20613 -6.86065 -6.11635 -3.16929 0.20156 0.54792 2.57548 2.85296 3.49885 3.51421 3.54852 3.60402 3.65781 3.71833 4.16900 4.53089 4.60251 4.60840 4.84366 4.92585 4.97744 5.07455 5.15901 5.19201 5.22568 5.32359 5.33330 5.46653 5.54932 5.59539 5.71350 5.82494 5.86540 5.94479 6.00106 6.02495 6.11049 6.19958 6.27045 6.33978 6.42600 6.45024 6.45587 6.49040 6.53795 6.64883 6.70627 6.82445 6.92383 7.02505 7.07928 7.28135 7.44211 7.66330 8.05594 8.07376 8.58949 9.16766 9.88077 10.24430 11.16697 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.002895 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.556136 B = 9669.533243 C =10457.532928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.175 3.825 3 C -0.171 4.171 4 C 0.139 3.861 5 C 0.567 3.433 6 O -0.528 6.528 7 N -0.678 5.678 8 C 0.122 3.878 9 H 0.097 0.903 10 C -0.128 4.128 11 H 0.070 0.930 12 C -0.107 4.107 13 C -0.136 4.136 14 C 0.154 3.846 15 N -0.572 5.572 16 C -0.368 4.368 17 H 0.056 0.944 18 C -0.013 4.013 19 N -0.901 5.901 20 Si 1.049 2.951 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.294 1.294 24 C 0.191 3.809 25 H 0.071 0.929 26 C -0.115 4.115 27 C -0.127 4.127 28 C -0.136 4.136 29 N -0.500 5.500 30 C 0.300 3.700 31 N -0.511 5.511 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.413 0.587 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.270 0.730 44 H 0.065 0.935 45 H 0.043 0.957 46 H 0.044 0.956 47 H 0.091 0.909 48 H 0.038 0.962 49 H 0.060 0.940 50 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.785 -4.757 1.980 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.027 3.973 3 C -0.194 4.194 4 C -0.009 4.009 5 C 0.350 3.650 6 O -0.404 6.404 7 N -0.328 5.328 8 C 0.016 3.984 9 H 0.115 0.885 10 C -0.149 4.149 11 H 0.088 0.912 12 C -0.145 4.145 13 C -0.174 4.174 14 C 0.029 3.971 15 N -0.290 5.290 16 C -0.497 4.497 17 H 0.073 0.927 18 C -0.217 4.217 19 N -0.539 5.539 20 Si 0.879 3.121 21 H -0.213 1.213 22 H -0.221 1.221 23 H -0.222 1.222 24 C 0.080 3.920 25 H 0.089 0.911 26 C -0.119 4.119 27 C -0.185 4.185 28 C -0.193 4.193 29 N -0.217 5.217 30 C 0.012 3.988 31 N -0.226 5.226 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.178 0.822 36 H 0.251 0.749 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.109 0.891 48 H 0.057 0.943 49 H 0.079 0.921 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -17.996 -4.757 1.582 18.681 hybrid contribution -1.841 -0.015 0.439 1.893 sum -19.837 -4.772 2.021 20.503 Atomic orbital electron populations 1.20823 0.87178 1.04437 1.04004 1.21857 0.97961 0.87753 0.89696 1.22820 0.94646 1.01406 1.00549 1.21724 0.92122 0.92670 0.94356 1.17784 0.82685 0.86900 0.77612 1.90783 1.71350 1.28159 1.50082 1.45677 1.04965 1.10882 1.71325 1.22392 0.91484 0.86183 0.98300 0.88494 1.23210 0.98409 0.97221 0.96066 0.91170 1.21561 0.97606 0.94109 1.01230 1.22070 0.96432 0.99743 0.99196 1.21006 0.95169 0.84305 0.96606 1.43299 1.05559 1.03766 1.76385 1.19916 0.87341 0.92198 1.50200 0.92659 1.25607 0.97201 1.00056 0.98842 1.70799 1.36033 1.29188 1.17923 0.83760 0.76476 0.75318 0.76505 1.21273 1.22070 1.22185 1.21250 0.85159 0.95626 0.89928 0.91066 1.23022 0.92418 0.96836 0.99620 1.21590 1.02105 0.96936 0.97842 1.22025 0.99692 0.96043 1.01502 1.68369 1.41938 0.98571 1.12803 1.25011 0.86479 0.96798 0.90524 1.68227 1.10556 1.30468 1.13353 0.89343 0.89743 0.89608 0.82248 0.74869 0.93118 0.90329 0.92223 0.92637 0.95146 0.91800 0.91901 0.91578 0.93809 0.93668 0.89110 0.94310 0.92120 0.77954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.22 36.01 0.37 -0.22 16 2 C 0.18 1.61 6.83 -82.23 -0.56 1.05 16 3 C -0.17 -1.80 9.41 -38.90 -0.37 -2.17 16 4 C 0.14 1.76 6.79 -82.64 -0.56 1.20 16 5 C 0.57 8.42 7.83 -12.05 -0.09 8.32 16 6 O -0.53 -8.98 16.06 5.39 0.09 -8.90 16 7 N -0.68 -10.03 4.74 -53.54 -0.25 -10.28 16 8 C 0.12 1.96 3.31 -66.88 -0.22 1.74 16 9 H 0.10 1.63 7.44 -51.93 -0.39 1.24 16 10 C -0.13 -2.22 4.08 -89.88 -0.37 -2.59 16 11 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 12 C -0.11 -1.79 5.20 -26.68 -0.14 -1.93 16 13 C -0.14 -2.46 6.10 -26.26 -0.16 -2.62 16 14 C 0.15 3.41 4.02 -3.91 -0.02 3.39 16 15 N -0.57 -13.24 2.55 -166.29 -0.42 -13.67 16 16 C -0.37 -9.73 9.28 -15.06 -0.14 -9.87 16 17 H 0.06 1.50 7.97 -52.49 -0.42 1.08 16 18 C -0.01 -0.36 4.33 -17.43 -0.08 -0.43 16 19 N -0.90 -25.68 12.65 55.49 0.70 -24.97 16 20 Si 1.05 24.61 30.03 -169.99 -5.10 19.50 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.19 3.76 3.39 -68.39 -0.23 3.53 16 25 H 0.07 1.46 7.86 -51.93 -0.41 1.05 16 26 C -0.11 -2.00 1.34 -153.86 -0.21 -2.21 16 27 C -0.13 -2.11 8.96 37.16 0.33 -1.78 16 28 C -0.14 -2.43 7.36 37.16 0.27 -2.16 16 29 N -0.50 -5.98 9.70 -11.14 -0.11 -6.09 16 30 C 0.30 3.00 12.27 -92.27 -1.13 1.87 16 31 N -0.51 -5.20 10.36 -10.80 -0.11 -5.31 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.16 1.49 7.74 -52.49 -0.41 1.08 16 36 H 0.41 5.87 6.12 -40.82 -0.25 5.62 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.29 4.69 -51.93 -0.24 1.05 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.03 0.70 5.01 -51.93 -0.26 0.44 16 42 H 0.06 1.60 6.85 -51.93 -0.36 1.24 16 43 H 0.27 7.68 6.96 -40.82 -0.28 7.40 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.04 0.67 5.85 -51.93 -0.30 0.37 16 47 H 0.09 1.68 1.96 -51.93 -0.10 1.58 16 48 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 50 H 0.20 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -30.56 384.07 -10.00 -40.56 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.28 Total: 8.25 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -3.30 Total: -4.87 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.19 Total: -60.33 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.10 Total: 19.50 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.56 -10.00 -40.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087282342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.207 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds