Wall clock time and date at job start Wed Apr 1 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38805 * 120.42952 * 2 1 4 4 C 1.39493 * 118.26889 * 179.97438 * 3 2 1 5 5 C 1.48451 * 120.55091 * 180.27995 * 4 3 2 6 6 O 1.21478 * 120.00235 * 359.72025 * 5 4 3 7 7 N 1.34778 * 119.99699 * 179.71751 * 5 4 3 8 8 C 1.46497 * 119.99727 * 179.97438 * 7 5 4 9 9 H 1.09001 * 113.22690 * 28.30115 * 8 7 5 10 10 C 1.50013 * 114.12666 * 255.49508 * 8 7 5 11 11 H 1.09000 * 112.50789 * 170.15128 * 10 8 7 12 12 C 1.51210 * 126.15841 * 27.76111 * 10 8 7 13 13 C 1.55147 * 105.66880 * 198.22404 * 12 10 8 14 14 C 1.52501 * 112.59693 * 55.74557 * 13 12 10 15 15 N 1.48411 * 111.86919 * 313.01207 * 14 13 12 16 16 C 1.36935 * 123.16891 * 231.81602 * 15 14 13 17 17 H 1.07999 * 120.00006 * 153.47314 * 16 15 14 18 18 C 1.38808 * 119.99755 * 333.47690 * 16 15 14 19 19 N 1.31616 * 120.00337 * 348.46889 * 18 16 15 20 20 Si 1.86805 * 119.99822 * 168.46637 * 18 16 15 21 21 H 1.48503 * 109.47207 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.46993 * 119.99836 * 20 18 16 23 23 H 1.48496 * 109.47174 * 240.00114 * 20 18 16 24 24 C 1.45379 * 113.66141 * 51.83599 * 15 14 13 25 25 H 1.09001 * 112.08948 * 59.74820 * 24 15 14 26 26 C 1.49965 * 126.22526 * 204.17591 * 24 15 14 27 27 C 1.52997 * 114.08600 * 25.65800 * 26 24 15 28 28 C 1.53000 * 114.07954 * 253.24239 * 26 24 15 29 29 N 1.33112 * 118.89774 * 0.02562 * 4 3 2 30 30 C 1.31554 * 120.73275 * 0.02562 * 29 4 3 31 31 N 1.31911 * 121.92396 * 0.02562 * 30 29 4 32 32 H 1.09000 * 109.47055 * 270.02096 * 1 2 3 33 33 H 1.08996 * 109.46998 * 30.01671 * 1 2 3 34 34 H 1.08999 * 109.47193 * 150.01804 * 1 2 3 35 35 H 1.08002 * 120.86456 * 359.97438 * 3 2 1 36 36 H 0.96996 * 120.00185 * 0.02562 * 7 5 4 37 37 H 1.09005 * 110.09930 * 317.75497 * 12 10 8 38 38 H 1.08997 * 110.10321 * 79.41787 * 12 10 8 39 39 H 1.08999 * 109.04599 * 294.84146 * 13 12 10 40 40 H 1.08992 * 108.63965 * 176.38154 * 13 12 10 41 41 H 1.08996 * 109.00447 * 192.39311 * 14 13 12 42 42 H 1.09005 * 109.00071 * 73.62175 * 14 13 12 43 43 H 0.97002 * 120.00329 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.47309 * 145.52523 * 27 26 24 45 45 H 1.08997 * 109.47506 * 265.53108 * 27 26 24 46 46 H 1.09005 * 109.46927 * 25.53270 * 27 26 24 47 47 H 1.08998 * 109.47205 * 306.07503 * 28 26 24 48 48 H 1.09001 * 109.47574 * 66.07797 * 28 26 24 49 49 H 1.09005 * 109.47094 * 186.07230 * 28 26 24 50 50 H 1.08009 * 119.03476 * 180.02562 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1443 0.0005 5 6 4.4062 2.3933 0.0068 6 8 3.8493 3.4729 0.0064 7 7 5.7524 2.3295 0.0130 8 6 6.5441 3.5621 0.0187 9 1 6.0322 4.3997 0.4925 10 6 7.1702 3.8947 -1.3033 11 1 7.6063 4.8936 -1.3189 12 6 6.6423 3.5016 -2.6647 13 6 7.8396 3.6565 -3.6391 14 6 9.0567 2.8464 -3.2054 15 7 9.3576 3.0297 -1.7638 16 6 10.5963 3.3782 -1.2954 17 1 10.6904 3.9037 -0.3566 18 6 11.7309 3.0560 -2.0272 19 7 11.6438 2.2264 -3.0453 20 14 13.3815 3.8000 -1.5672 21 1 13.2116 4.6947 -0.3943 22 1 14.3364 2.7145 -1.2281 23 1 13.9085 4.5826 -2.7139 24 6 8.2136 2.8039 -0.8956 25 1 7.8168 1.7935 -0.9948 26 6 8.0195 3.3691 0.4798 27 6 8.7721 4.6777 0.7290 28 6 8.1934 2.3471 1.6050 29 7 4.2028 -0.0445 0.0005 30 6 3.4954 -1.1537 -0.0005 31 7 2.1764 -1.1397 -0.0021 32 1 -0.3633 0.0004 1.0277 33 1 -0.3633 0.8898 -0.5141 34 1 -0.3633 -0.8901 -0.5135 35 1 1.6913 2.1441 -0.0004 36 1 6.1971 1.4674 0.0131 37 1 6.2919 2.4696 -2.6468 38 1 5.8321 4.1686 -2.9592 39 1 8.1189 4.7087 -3.6950 40 1 7.5287 3.3223 -4.6288 41 1 9.9201 3.1619 -3.7911 42 1 8.8666 1.7903 -3.3968 43 1 12.4366 2.0015 -3.5570 44 1 8.1838 5.3152 1.3889 45 1 9.7333 4.4611 1.1950 46 1 8.9353 5.1893 -0.2197 47 1 7.5416 1.4925 1.4235 48 1 9.2305 2.0130 1.6354 49 1 7.9320 2.8076 2.5578 50 1 4.0097 -2.1035 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087282344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:31 Heat of formation + Delta-G solvation = 84.028052 kcal Electronic energy + Delta-G solvation = -31500.371207 eV Core-core repulsion = 27530.198297 eV Total energy + Delta-G solvation = -3970.172910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.59221 -41.03132 -38.77852 -35.29593 -34.87083 -33.30246 -32.94563 -32.69973 -30.16995 -29.34383 -28.98607 -27.19217 -26.07231 -25.45423 -24.30076 -23.76816 -22.38938 -21.00758 -20.45330 -19.23917 -18.47372 -18.25282 -17.26710 -16.68461 -15.82996 -15.74826 -15.68621 -15.25904 -14.87583 -14.60016 -14.14634 -14.01702 -13.80417 -13.72713 -13.52697 -13.42841 -13.21670 -12.80045 -12.74222 -12.55160 -12.40574 -12.06081 -11.78017 -11.34390 -11.23762 -11.15285 -11.06852 -10.86270 -10.82824 -10.67070 -10.52388 -10.37339 -10.18230 -10.06580 -9.91344 -9.90203 -9.86246 -9.57604 -9.30646 -8.88103 -8.73385 -8.40618 -6.56318 -5.74080 -3.18402 0.26262 0.60481 2.64659 2.90301 3.36589 3.44430 3.45600 3.57624 3.65807 3.71703 4.22293 4.48908 4.58720 4.66099 4.67565 4.96972 4.99536 5.11481 5.15748 5.21139 5.28061 5.37400 5.46788 5.50995 5.57429 5.77569 5.86381 5.88215 5.93590 6.00224 6.02678 6.05303 6.26925 6.28092 6.37346 6.38850 6.44392 6.52658 6.59163 6.61328 6.64850 6.74587 6.79440 6.87729 7.03483 7.13432 7.43423 7.49165 7.71636 7.72380 7.83012 8.12364 8.43251 9.19824 9.85417 10.50771 11.33490 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.002911 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.035420 B = 9615.232428 C = 9766.338759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.174 3.826 3 C -0.171 4.171 4 C 0.139 3.861 5 C 0.569 3.431 6 O -0.528 6.528 7 N -0.675 5.675 8 C 0.136 3.864 9 H 0.097 0.903 10 C -0.172 4.172 11 H 0.102 0.898 12 C -0.085 4.085 13 C -0.135 4.135 14 C 0.166 3.834 15 N -0.571 5.571 16 C -0.239 4.239 17 H 0.077 0.923 18 C -0.002 4.002 19 N -0.908 5.908 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.151 3.849 25 H 0.046 0.954 26 C -0.065 4.065 27 C -0.117 4.117 28 C -0.135 4.135 29 N -0.499 5.499 30 C 0.300 3.700 31 N -0.511 5.511 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.413 0.587 37 H 0.049 0.951 38 H 0.041 0.959 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.093 0.907 42 H 0.013 0.987 43 H 0.252 0.748 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.048 0.952 48 H 0.065 0.935 49 H 0.049 0.951 50 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.503 -3.012 6.643 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.027 3.973 3 C -0.194 4.194 4 C -0.008 4.008 5 C 0.352 3.648 6 O -0.403 6.403 7 N -0.325 5.325 8 C 0.031 3.969 9 H 0.115 0.885 10 C -0.193 4.193 11 H 0.120 0.880 12 C -0.123 4.123 13 C -0.174 4.174 14 C 0.041 3.959 15 N -0.293 5.293 16 C -0.369 4.369 17 H 0.095 0.905 18 C -0.200 4.200 19 N -0.553 5.553 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.218 1.218 24 C 0.043 3.957 25 H 0.063 0.937 26 C -0.066 4.066 27 C -0.174 4.174 28 C -0.192 4.192 29 N -0.216 5.216 30 C 0.012 3.988 31 N -0.226 5.226 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.177 0.823 36 H 0.251 0.749 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.031 0.969 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.067 0.933 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -18.156 -3.111 6.528 19.544 hybrid contribution 0.821 0.425 -0.001 0.924 sum -17.335 -2.686 6.528 18.717 Atomic orbital electron populations 1.20817 0.87233 1.04417 1.03957 1.21843 0.97930 0.87778 0.89776 1.22810 0.94662 1.01371 1.00596 1.21732 0.92107 0.92687 0.94277 1.17726 0.82591 0.86864 0.77611 1.90782 1.71338 1.28131 1.50083 1.45595 1.04967 1.10625 1.71354 1.21653 0.90788 0.86057 0.98383 0.88509 1.23340 1.00590 1.02517 0.92840 0.88036 1.21217 0.96785 0.99489 0.94814 1.22286 0.96874 1.01210 0.97052 1.20865 0.94778 0.95213 0.85058 1.43927 1.05888 1.79518 0.99923 1.19356 0.82061 1.29097 1.06345 0.90508 1.25104 0.97693 0.97885 0.99281 1.69959 1.28065 1.35486 1.21813 0.86256 0.84482 0.78488 0.77784 1.20283 1.21860 1.21772 1.21737 0.89658 0.93801 0.90550 0.93721 1.21871 0.92465 0.97201 0.95113 1.21644 0.99046 0.94291 1.02422 1.21691 1.02258 0.97920 0.97325 1.68383 1.41907 0.98564 1.12729 1.25010 0.86463 0.96818 0.90525 1.68227 1.10567 1.30462 1.13385 0.89389 0.89764 0.89636 0.82276 0.74875 0.93238 0.94005 0.93111 0.93509 0.88847 0.96908 0.93823 0.93770 0.91713 0.90494 0.93252 0.91638 0.93161 0.77989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.22 36.01 0.37 -0.24 16 2 C 0.17 1.65 6.83 -82.24 -0.56 1.09 16 3 C -0.17 -1.84 9.41 -38.90 -0.37 -2.21 16 4 C 0.14 1.80 6.79 -82.64 -0.56 1.24 16 5 C 0.57 8.48 7.83 -12.05 -0.09 8.39 16 6 O -0.53 -8.98 16.10 5.39 0.09 -8.89 16 7 N -0.67 -9.99 4.32 -58.40 -0.25 -10.24 16 8 C 0.14 2.16 3.90 -71.82 -0.28 1.88 16 9 H 0.10 1.55 7.60 -51.93 -0.39 1.16 16 10 C -0.17 -3.05 2.94 -95.83 -0.28 -3.33 16 11 H 0.10 1.91 6.10 -51.93 -0.32 1.59 16 12 C -0.09 -1.53 6.01 -26.50 -0.16 -1.69 16 13 C -0.13 -2.62 5.93 -25.85 -0.15 -2.77 16 14 C 0.17 3.89 5.32 -3.24 -0.02 3.87 16 15 N -0.57 -13.48 2.86 -169.40 -0.48 -13.97 16 16 C -0.24 -6.15 9.04 -15.06 -0.14 -6.28 16 17 H 0.08 1.90 5.18 -52.49 -0.27 1.63 16 18 C 0.00 -0.05 5.15 -17.43 -0.09 -0.14 16 19 N -0.91 -25.79 10.94 55.49 0.61 -25.19 16 20 Si 0.90 21.29 29.57 -169.99 -5.03 16.26 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.15 2.96 2.90 -72.12 -0.21 2.75 16 25 H 0.05 0.92 6.60 -51.93 -0.34 0.58 16 26 C -0.07 -1.08 1.38 -159.16 -0.22 -1.30 16 27 C -0.12 -1.92 7.28 37.16 0.27 -1.65 16 28 C -0.13 -2.02 9.10 37.16 0.34 -1.68 16 29 N -0.50 -6.14 9.70 -11.14 -0.11 -6.24 16 30 C 0.30 3.11 12.27 -92.26 -1.13 1.97 16 31 N -0.51 -5.35 10.36 -10.80 -0.11 -5.46 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.16 1.52 7.74 -52.49 -0.41 1.11 16 36 H 0.41 6.01 5.57 -40.82 -0.23 5.78 16 37 H 0.05 0.90 7.97 -51.93 -0.41 0.48 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 2.47 6.03 -51.93 -0.31 2.15 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 1.10 7.06 -51.93 -0.37 0.73 16 46 H 0.08 1.40 5.69 -51.93 -0.30 1.11 16 47 H 0.05 0.69 6.43 -51.93 -0.33 0.36 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.20 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -30.45 387.17 -10.20 -40.65 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.47 Total: 7.34 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -3.28 Total: -0.10 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -0.35 Total: -61.10 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.45 -10.20 -40.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087282344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.682 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds