Wall clock time and date at job start Wed Apr 1 2020 03:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 113.31063 * 2 1 4 4 C 1.54497 * 113.85097 * 227.61786 * 2 1 3 5 5 H 1.09004 * 114.83913 * 169.88386 * 4 2 1 6 6 N 1.46500 * 113.81874 * 37.09421 * 4 2 1 7 7 C 1.34778 * 120.00166 * 161.85274 * 6 4 2 8 8 O 1.21286 * 119.99785 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00328 * 180.02562 * 7 6 4 10 10 C 1.50697 * 109.47350 * 179.97438 * 9 7 6 11 11 C 1.38596 * 120.80597 * 269.72502 * 10 9 7 12 12 N 1.32337 * 119.10634 * 179.71882 * 11 10 9 13 13 C 1.31792 * 120.81377 * 0.56588 * 12 11 10 14 14 N 1.31797 * 121.76093 * 359.70573 * 13 12 11 15 15 C 1.32331 * 120.81266 * 359.97438 * 14 13 12 16 16 C 1.50004 * 83.56967 * 283.52533 * 4 2 1 17 17 H 1.09005 * 112.50271 * 75.65163 * 16 4 2 18 18 C 1.51186 * 126.14418 * 218.15735 * 16 4 2 19 19 C 1.54093 * 106.20228 * 161.48608 * 18 16 4 20 20 C 1.52494 * 112.59046 * 304.41427 * 19 18 16 21 21 N 1.48412 * 111.87177 * 46.84020 * 20 19 18 22 22 C 1.36934 * 123.17039 * 128.13925 * 21 20 19 23 23 H 1.08001 * 120.00346 * 223.79008 * 22 21 20 24 24 C 1.38813 * 119.99961 * 43.78639 * 22 21 20 25 25 N 1.31617 * 120.00273 * 208.16838 * 24 22 21 26 26 Si 1.86803 * 119.99752 * 28.17032 * 24 22 21 27 27 H 1.48508 * 109.47088 * 84.39520 * 26 24 22 28 28 H 1.48494 * 109.46969 * 204.39356 * 26 24 22 29 29 H 1.48503 * 109.47261 * 324.39544 * 26 24 22 30 30 C 1.45382 * 113.66321 * 308.16431 * 21 20 19 31 31 H 1.09003 * 112.08932 * 300.23324 * 30 21 20 32 32 H 1.08998 * 109.47322 * 294.98294 * 1 2 3 33 33 H 1.09001 * 109.46493 * 54.97937 * 1 2 3 34 34 H 1.08997 * 109.46933 * 174.98213 * 1 2 3 35 35 H 1.08992 * 109.46963 * 192.79391 * 3 2 1 36 36 H 1.09007 * 109.46597 * 312.78635 * 3 2 1 37 37 H 1.08998 * 109.47394 * 72.78327 * 3 2 1 38 38 H 0.96995 * 119.99930 * 341.85868 * 6 4 2 39 39 H 1.08998 * 109.47236 * 300.00408 * 9 7 6 40 40 H 1.09000 * 109.46749 * 59.99721 * 9 7 6 41 41 H 1.07998 * 120.44159 * 359.97438 * 11 10 9 42 42 H 1.07998 * 119.12123 * 179.72826 * 13 12 11 43 43 H 1.08005 * 120.45006 * 180.02562 * 15 14 13 44 44 H 1.09001 * 110.17930 * 42.27039 * 18 16 4 45 45 H 1.08997 * 110.02036 * 280.61507 * 18 16 4 46 46 H 1.09003 * 108.84050 * 183.64579 * 19 18 16 47 47 H 1.08992 * 108.84144 * 65.18728 * 19 18 16 48 48 H 1.08997 * 109.00307 * 167.45479 * 20 19 18 49 49 H 1.09005 * 109.00314 * 286.30487 * 20 19 18 50 50 H 0.96995 * 120.00220 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1355 1.4051 0.0000 4 6 2.1548 -0.9525 -1.0438 5 1 3.2306 -0.8410 -1.1794 6 7 1.4163 -1.0115 -2.3076 7 6 2.0142 -1.4925 -3.4157 8 8 3.1635 -1.8768 -3.3663 9 6 1.2547 -1.5527 -4.7159 10 6 2.1429 -2.1248 -5.7905 11 6 2.9347 -1.2979 -6.5717 12 7 3.7063 -1.8368 -7.5021 13 6 3.7189 -3.1401 -7.6970 14 7 2.9756 -3.9565 -6.9773 15 6 2.1839 -3.4903 -6.0249 16 6 1.7680 -2.0145 -0.0575 17 1 0.6986 -2.2251 -0.0691 18 6 2.5716 -3.2484 0.2853 19 6 2.0262 -3.7556 1.6342 20 6 2.0706 -2.6884 2.7226 21 7 1.5369 -1.3887 2.2446 22 6 0.5657 -0.6879 2.9085 23 1 -0.2501 -0.2424 2.3586 24 6 0.6297 -0.5500 4.2882 25 7 -0.4758 -0.4003 4.9867 26 14 2.2849 -0.5769 5.1537 27 1 2.8833 0.7819 5.1201 28 1 2.0989 -1.0010 6.5646 29 1 3.1885 -1.5329 4.4645 30 6 2.1419 -0.9300 1.0048 31 1 3.2196 -0.7967 1.0994 32 1 -0.3634 0.4340 0.9315 33 1 -0.3632 0.5898 -0.8416 34 1 -0.3633 -1.0237 -0.0899 35 1 3.1996 1.3422 -0.2276 36 1 1.6381 2.0150 -0.7543 37 1 2.0000 1.8592 0.9816 38 1 0.4971 -0.7044 -2.3470 39 1 0.3762 -2.1864 -4.5946 40 1 0.9415 -0.5482 -5.0006 41 1 2.9251 -0.2286 -6.4204 42 1 4.3558 -3.5503 -8.4668 43 1 1.5775 -4.1646 -5.4383 44 1 3.6276 -2.9952 0.3794 45 1 2.4345 -4.0085 -0.4838 46 1 2.6211 -4.6108 1.9552 47 1 0.9937 -4.0769 1.4981 48 1 1.4776 -3.0242 3.5733 49 1 3.1034 -2.5505 3.0426 50 1 -0.4310 -0.3036 5.9508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087285323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:04 Heat of formation + Delta-G solvation = 83.131493 kcal Electronic energy + Delta-G solvation = -31116.234218 eV Core-core repulsion = 27146.022431 eV Total energy + Delta-G solvation = -3970.211787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.41981 -41.12183 -39.06607 -35.59109 -33.98909 -33.93051 -33.36327 -33.01900 -30.89825 -29.55572 -28.65307 -27.34532 -25.89502 -24.85861 -24.82861 -23.40985 -22.26764 -21.01304 -20.17308 -19.63722 -18.46397 -17.89454 -17.87293 -17.19064 -16.71190 -16.06390 -15.28298 -14.94283 -14.89309 -14.73963 -14.19596 -14.02022 -13.95250 -13.86920 -13.82936 -13.53399 -13.40551 -13.05539 -12.77679 -12.59881 -12.45802 -12.08045 -11.74821 -11.69068 -11.49781 -11.24956 -11.21627 -11.08275 -11.05035 -10.71668 -10.53498 -10.46409 -10.34508 -10.07935 -10.00705 -9.72941 -9.58827 -9.49738 -9.48289 -8.98654 -8.73829 -8.33326 -6.56968 -6.08137 -3.50136 0.60225 0.83995 2.56339 3.14201 3.37211 3.47779 3.52476 3.60241 3.88475 3.96612 4.25473 4.34090 4.46048 4.52840 4.60043 4.69919 4.82757 4.97402 5.02250 5.08581 5.16658 5.21202 5.24643 5.47520 5.56548 5.58168 5.67790 5.78260 5.84920 5.93697 5.98101 6.04148 6.10841 6.11908 6.22102 6.33532 6.34533 6.42748 6.45928 6.52689 6.57790 6.62433 6.67774 6.77493 6.83789 6.88334 6.91601 7.11130 7.54573 7.80951 7.98871 8.20229 8.43178 8.91786 9.66657 10.25925 11.06626 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022763 B = 0.002638 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.754728 B =10611.751118 C =11087.627015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.134 4.134 4 C 0.141 3.859 5 H 0.111 0.889 6 N -0.710 5.710 7 C 0.512 3.488 8 O -0.539 6.539 9 C -0.097 4.097 10 C -0.166 4.166 11 C 0.160 3.840 12 N -0.520 5.520 13 C 0.287 3.713 14 N -0.519 5.519 15 C 0.162 3.838 16 C -0.169 4.169 17 H 0.099 0.901 18 C -0.088 4.088 19 C -0.131 4.131 20 C 0.140 3.860 21 N -0.579 5.579 22 C -0.269 4.269 23 H 0.086 0.914 24 C 0.047 3.953 25 N -0.890 5.890 26 Si 0.850 3.150 27 H -0.288 1.288 28 H -0.299 1.299 29 H -0.255 1.255 30 C 0.146 3.854 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.400 0.600 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.165 0.835 42 H 0.195 0.805 43 H 0.166 0.834 44 H 0.053 0.947 45 H 0.045 0.955 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.025 0.975 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.858 -1.685 -20.355 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.061 4.061 3 C -0.192 4.192 4 C 0.037 3.963 5 H 0.129 0.871 6 N -0.360 5.360 7 C 0.297 3.703 8 O -0.415 6.415 9 C -0.138 4.138 10 C -0.170 4.170 11 C -0.005 4.005 12 N -0.233 5.233 13 C 0.000 4.000 14 N -0.232 5.232 15 C -0.004 4.004 16 C -0.191 4.191 17 H 0.116 0.884 18 C -0.126 4.126 19 C -0.170 4.170 20 C 0.015 3.985 21 N -0.302 5.302 22 C -0.397 4.397 23 H 0.103 0.897 24 C -0.155 4.155 25 N -0.530 5.530 26 Si 0.677 3.323 27 H -0.215 1.215 28 H -0.226 1.226 29 H -0.180 1.180 30 C 0.038 3.962 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.235 0.765 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.182 0.818 42 H 0.211 0.789 43 H 0.183 0.817 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.043 0.957 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.156 -2.306 -20.801 21.165 hybrid contribution -0.012 0.494 1.476 1.557 sum 3.144 -1.812 -19.325 19.663 Atomic orbital electron populations 1.21846 0.92265 1.01965 1.02643 1.21575 0.96691 0.93689 0.94132 1.21718 0.99589 0.95713 1.02142 1.22235 0.96750 0.97522 0.79830 0.87140 1.46030 1.16759 1.63998 1.09232 1.20366 0.87310 0.77685 0.84932 1.90737 1.17711 1.47427 1.85663 1.20565 0.98168 1.04037 0.91074 1.21085 1.00764 0.96266 0.98911 1.23080 0.88134 1.00809 0.88523 1.68425 1.20562 1.14978 1.19302 1.24959 0.93684 0.85523 0.95851 1.68432 1.07164 1.40794 1.06808 1.23101 0.92740 0.92850 0.91732 1.23465 1.01236 0.96064 0.98299 0.88358 1.21089 0.98626 0.96720 0.96160 1.21958 1.00516 0.98471 0.96069 1.21415 0.97169 0.85064 0.94844 1.44000 1.43884 1.17037 1.25301 1.18793 1.00583 1.30960 0.89374 0.89691 1.25742 0.96042 0.96816 0.96926 1.69960 1.26747 1.49569 1.06714 0.87341 0.87670 0.78873 0.78373 1.21526 1.22613 1.18029 1.21450 0.94586 0.93283 0.86848 0.93055 0.89207 0.94207 0.91924 0.93145 0.93282 0.91574 0.76455 0.87286 0.87335 0.81759 0.78871 0.81719 0.92795 0.93654 0.93059 0.92562 0.91849 0.95668 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 7.15 37.16 0.27 -1.66 16 2 C -0.06 -0.90 1.33 -162.18 -0.22 -1.12 16 3 C -0.13 -1.91 9.27 37.16 0.34 -1.56 16 4 C 0.14 1.97 3.41 -72.53 -0.25 1.72 16 5 H 0.11 1.72 7.55 -51.93 -0.39 1.32 16 6 N -0.71 -7.71 5.32 -58.36 -0.31 -8.02 16 7 C 0.51 5.73 7.82 -10.98 -0.09 5.64 16 8 O -0.54 -8.48 15.71 5.55 0.09 -8.39 16 9 C -0.10 -0.67 5.88 -29.04 -0.17 -0.84 16 10 C -0.17 -1.51 4.41 -104.36 -0.46 -1.97 16 11 C 0.16 1.53 11.01 -17.20 -0.19 1.34 16 12 N -0.52 -5.63 10.44 -14.58 -0.15 -5.78 16 13 C 0.29 2.90 12.28 -92.15 -1.13 1.77 16 14 N -0.52 -5.72 10.44 -14.58 -0.15 -5.87 16 15 C 0.16 1.59 11.01 -17.20 -0.19 1.40 16 16 C -0.17 -2.69 2.86 -98.18 -0.28 -2.98 16 17 H 0.10 1.66 5.76 -51.93 -0.30 1.36 16 18 C -0.09 -1.43 6.11 -27.07 -0.17 -1.59 16 19 C -0.13 -2.24 5.90 -26.42 -0.16 -2.40 16 20 C 0.14 2.88 4.50 -3.25 -0.01 2.87 16 21 N -0.58 -12.62 2.32 -169.42 -0.39 -13.01 16 22 C -0.27 -6.82 9.38 -15.06 -0.14 -6.96 16 23 H 0.09 2.24 5.06 -52.49 -0.27 1.98 16 24 C 0.05 1.28 5.11 -17.43 -0.09 1.19 16 25 N -0.89 -25.76 13.97 55.49 0.78 -24.99 16 26 Si 0.85 20.88 27.35 -169.99 -4.65 16.23 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 29 H -0.26 -5.97 4.75 56.52 0.27 -5.70 16 30 C 0.15 2.68 3.08 -72.14 -0.22 2.46 16 31 H 0.05 0.98 8.01 -51.93 -0.42 0.57 16 32 H 0.09 1.63 5.50 -51.93 -0.29 1.35 16 33 H 0.04 0.46 7.72 -51.93 -0.40 0.05 16 34 H 0.06 0.95 5.82 -51.93 -0.30 0.64 16 35 H 0.05 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.40 3.42 7.27 -40.82 -0.30 3.12 16 39 H 0.11 0.51 8.10 -51.93 -0.42 0.09 16 40 H 0.11 0.47 8.10 -51.93 -0.42 0.04 16 41 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 44 H 0.05 0.88 8.06 -51.93 -0.42 0.47 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.06 1.41 7.25 -51.93 -0.38 1.03 16 49 H 0.03 0.54 6.42 -51.93 -0.33 0.20 16 50 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -32.61 386.87 -9.81 -42.42 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.70 Total: 4.25 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -3.15 Total: -2.67 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.23 Total: -57.67 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.65 Total: 16.23 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.61 -9.81 -42.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087285323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.554 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds