Wall clock time and date at job start Wed Apr 1 2020 03:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 113.31063 * 2 1 4 4 C 1.54497 * 113.85097 * 227.61786 * 2 1 3 5 5 H 1.09004 * 114.83913 * 169.88386 * 4 2 1 6 6 N 1.46500 * 113.81874 * 37.09421 * 4 2 1 7 7 C 1.34778 * 120.00166 * 161.85274 * 6 4 2 8 8 O 1.21286 * 119.99785 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00328 * 180.02562 * 7 6 4 10 10 C 1.50697 * 109.47350 * 179.97438 * 9 7 6 11 11 C 1.38596 * 120.80597 * 269.72502 * 10 9 7 12 12 N 1.32337 * 119.10634 * 179.71882 * 11 10 9 13 13 C 1.31792 * 120.81377 * 0.56588 * 12 11 10 14 14 N 1.31797 * 121.76093 * 359.70573 * 13 12 11 15 15 C 1.32331 * 120.81266 * 359.97438 * 14 13 12 16 16 C 1.50004 * 83.56967 * 283.52533 * 4 2 1 17 17 H 1.09005 * 112.50271 * 75.65163 * 16 4 2 18 18 C 1.51186 * 126.14418 * 218.15735 * 16 4 2 19 19 C 1.54093 * 106.20228 * 161.48608 * 18 16 4 20 20 C 1.52494 * 112.59046 * 304.41427 * 19 18 16 21 21 N 1.48412 * 111.87177 * 46.84020 * 20 19 18 22 22 C 1.36934 * 123.17039 * 128.13925 * 21 20 19 23 23 H 1.08001 * 120.00346 * 223.79008 * 22 21 20 24 24 C 1.38813 * 119.99961 * 43.78639 * 22 21 20 25 25 N 1.31617 * 120.00273 * 208.16838 * 24 22 21 26 26 Si 1.86803 * 119.99752 * 28.17032 * 24 22 21 27 27 H 1.48508 * 109.47088 * 84.39520 * 26 24 22 28 28 H 1.48494 * 109.46969 * 204.39356 * 26 24 22 29 29 H 1.48503 * 109.47261 * 324.39544 * 26 24 22 30 30 C 1.45382 * 113.66321 * 308.16431 * 21 20 19 31 31 H 1.09003 * 112.08932 * 300.23324 * 30 21 20 32 32 H 1.08998 * 109.47322 * 294.98294 * 1 2 3 33 33 H 1.09001 * 109.46493 * 54.97937 * 1 2 3 34 34 H 1.08997 * 109.46933 * 174.98213 * 1 2 3 35 35 H 1.08992 * 109.46963 * 192.79391 * 3 2 1 36 36 H 1.09007 * 109.46597 * 312.78635 * 3 2 1 37 37 H 1.08998 * 109.47394 * 72.78327 * 3 2 1 38 38 H 0.96995 * 119.99930 * 341.85868 * 6 4 2 39 39 H 1.08998 * 109.47236 * 300.00408 * 9 7 6 40 40 H 1.09000 * 109.46749 * 59.99721 * 9 7 6 41 41 H 1.07998 * 120.44159 * 359.97438 * 11 10 9 42 42 H 1.07998 * 119.12123 * 179.72826 * 13 12 11 43 43 H 1.08005 * 120.45006 * 180.02562 * 15 14 13 44 44 H 1.09001 * 110.17930 * 42.27039 * 18 16 4 45 45 H 1.08997 * 110.02036 * 280.61507 * 18 16 4 46 46 H 1.09003 * 108.84050 * 183.64579 * 19 18 16 47 47 H 1.08992 * 108.84144 * 65.18728 * 19 18 16 48 48 H 1.08997 * 109.00307 * 167.45479 * 20 19 18 49 49 H 1.09005 * 109.00314 * 286.30487 * 20 19 18 50 50 H 0.96995 * 120.00220 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1355 1.4051 0.0000 4 6 2.1548 -0.9525 -1.0438 5 1 3.2306 -0.8410 -1.1794 6 7 1.4163 -1.0115 -2.3076 7 6 2.0142 -1.4925 -3.4157 8 8 3.1635 -1.8768 -3.3663 9 6 1.2547 -1.5527 -4.7159 10 6 2.1429 -2.1248 -5.7905 11 6 2.9347 -1.2979 -6.5717 12 7 3.7063 -1.8368 -7.5021 13 6 3.7189 -3.1401 -7.6970 14 7 2.9756 -3.9565 -6.9773 15 6 2.1839 -3.4903 -6.0249 16 6 1.7680 -2.0145 -0.0575 17 1 0.6986 -2.2251 -0.0691 18 6 2.5716 -3.2484 0.2853 19 6 2.0262 -3.7556 1.6342 20 6 2.0706 -2.6884 2.7226 21 7 1.5369 -1.3887 2.2446 22 6 0.5657 -0.6879 2.9085 23 1 -0.2501 -0.2424 2.3586 24 6 0.6297 -0.5500 4.2882 25 7 -0.4758 -0.4003 4.9867 26 14 2.2849 -0.5769 5.1537 27 1 2.8833 0.7819 5.1201 28 1 2.0989 -1.0010 6.5646 29 1 3.1885 -1.5329 4.4645 30 6 2.1419 -0.9300 1.0048 31 1 3.2196 -0.7967 1.0994 32 1 -0.3634 0.4340 0.9315 33 1 -0.3632 0.5898 -0.8416 34 1 -0.3633 -1.0237 -0.0899 35 1 3.1996 1.3422 -0.2276 36 1 1.6381 2.0150 -0.7543 37 1 2.0000 1.8592 0.9816 38 1 0.4971 -0.7044 -2.3470 39 1 0.3762 -2.1864 -4.5946 40 1 0.9415 -0.5482 -5.0006 41 1 2.9251 -0.2286 -6.4204 42 1 4.3558 -3.5503 -8.4668 43 1 1.5775 -4.1646 -5.4383 44 1 3.6276 -2.9952 0.3794 45 1 2.4345 -4.0085 -0.4838 46 1 2.6211 -4.6108 1.9552 47 1 0.9937 -4.0769 1.4981 48 1 1.4776 -3.0242 3.5733 49 1 3.1034 -2.5505 3.0426 50 1 -0.4310 -0.3036 5.9508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087285323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:03 Heat of formation + Delta-G solvation = 62.695228 kcal Electronic energy + Delta-G solvation = -31117.120401 eV Core-core repulsion = 27146.022431 eV Total energy + Delta-G solvation = -3971.097970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.54084 -41.96135 -40.04570 -37.07208 -34.83571 -34.70603 -34.63692 -34.33568 -32.68530 -30.86439 -29.38451 -28.58237 -27.42816 -26.26197 -25.54293 -24.38225 -23.65108 -22.31882 -21.23093 -21.02848 -19.77223 -18.69780 -18.56824 -18.53952 -17.86971 -17.20553 -16.87768 -16.04060 -15.87313 -15.71304 -15.48164 -15.36023 -15.10787 -14.91461 -14.76648 -14.54209 -14.47219 -14.44058 -14.21562 -14.04830 -13.64082 -13.39171 -13.12055 -12.96083 -12.73621 -12.68308 -12.65645 -12.45137 -11.99454 -11.95437 -11.88617 -11.79388 -11.68574 -11.44844 -11.38993 -11.19784 -10.97248 -10.61149 -10.31134 -10.19361 -10.17749 -9.80298 -8.36636 -8.17003 -5.53219 -0.07815 0.15052 1.36147 1.44365 1.51303 1.72916 2.27723 2.49996 2.87329 3.04430 3.25083 3.27788 3.32744 3.47394 3.65684 3.68188 3.71189 3.85394 3.91665 3.98507 4.11379 4.16754 4.34768 4.45366 4.49826 4.53214 4.62883 4.64673 4.66851 4.71536 4.77444 4.89921 4.95546 4.96344 5.01874 5.09129 5.10531 5.18431 5.20879 5.25842 5.30814 5.37066 5.46495 5.49268 5.53902 5.62216 5.79471 5.99326 5.99617 6.44893 6.70173 7.02737 7.11554 7.37654 7.67972 8.33079 9.01618 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022763 B = 0.002638 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.754728 B =10611.751118 C =11087.627015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 C -0.131 4.131 4 C 0.163 3.837 5 H 0.100 0.900 6 N -0.700 5.700 7 C 0.514 3.486 8 O -0.586 6.586 9 C -0.086 4.086 10 C -0.167 4.167 11 C 0.149 3.851 12 N -0.541 5.541 13 C 0.276 3.724 14 N -0.541 5.541 15 C 0.147 3.853 16 C -0.154 4.154 17 H 0.094 0.906 18 C -0.085 4.085 19 C -0.122 4.122 20 C 0.137 3.863 21 N -0.590 5.590 22 C -0.242 4.242 23 H 0.073 0.927 24 C -0.006 4.006 25 N -0.937 5.937 26 Si 0.894 3.106 27 H -0.297 1.297 28 H -0.309 1.309 29 H -0.239 1.239 30 C 0.121 3.879 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.416 0.584 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.187 0.813 42 H 0.215 0.785 43 H 0.183 0.817 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.053 0.947 48 H 0.040 0.960 49 H 0.021 0.979 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.836 -1.808 -23.204 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.189 4.189 4 C 0.057 3.943 5 H 0.118 0.882 6 N -0.351 5.351 7 C 0.301 3.699 8 O -0.466 6.466 9 C -0.126 4.126 10 C -0.172 4.172 11 C -0.017 4.017 12 N -0.254 5.254 13 C -0.011 4.011 14 N -0.255 5.255 15 C -0.018 4.018 16 C -0.175 4.175 17 H 0.112 0.888 18 C -0.123 4.123 19 C -0.161 4.161 20 C 0.013 3.987 21 N -0.314 5.314 22 C -0.371 4.371 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.581 5.581 26 Si 0.723 3.277 27 H -0.225 1.225 28 H -0.237 1.237 29 H -0.164 1.164 30 C 0.014 3.986 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.254 0.746 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.204 0.796 42 H 0.232 0.768 43 H 0.200 0.800 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.059 0.941 49 H 0.039 0.961 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.135 -2.435 -23.690 24.020 hybrid contribution 0.008 0.522 2.267 2.326 sum 3.144 -1.912 -21.423 21.737 Atomic orbital electron populations 1.21725 0.91782 1.02126 1.02306 1.21582 0.96938 0.94042 0.93166 1.21689 1.00316 0.95284 1.01579 1.21696 0.96338 0.95391 0.80877 0.88243 1.45840 1.17250 1.63940 1.08069 1.21045 0.86795 0.76101 0.85912 1.90735 1.20026 1.49374 1.86430 1.20622 0.97749 1.06708 0.87533 1.21279 1.00801 0.95889 0.99189 1.23565 0.87782 1.02077 0.88243 1.68460 1.21403 1.15337 1.20217 1.25426 0.93862 0.85546 0.96276 1.68457 1.07972 1.41423 1.07647 1.23534 0.92771 0.93849 0.91678 1.23383 1.00922 0.95444 0.97741 0.88821 1.21060 0.98374 0.97118 0.95739 1.21830 1.00982 0.97741 0.95499 1.21412 0.96122 0.85602 0.95612 1.44115 1.43663 1.17588 1.26025 1.18896 1.00442 1.28646 0.89124 0.90960 1.26219 0.97812 0.98360 0.97959 1.70046 1.28185 1.53236 1.06598 0.86601 0.85356 0.78522 0.77210 1.22481 1.23651 1.16360 1.21747 0.94325 0.96653 0.85875 0.93736 0.93001 0.90187 0.92270 0.92558 0.90617 0.94081 0.74642 0.84238 0.83791 0.79628 0.76842 0.80034 0.93025 0.92223 0.90931 0.92768 0.94120 0.96143 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.35 7.15 71.98 0.51 -2.84 16 2 C -0.06 -1.58 1.33 -57.15 -0.08 -1.66 16 3 C -0.13 -3.48 9.27 71.98 0.67 -2.81 16 4 C 0.16 4.11 3.41 42.01 0.14 4.25 16 5 H 0.10 2.86 7.55 -2.38 -0.02 2.84 16 6 N -0.70 -12.36 5.32 -456.93 -2.43 -14.79 16 7 C 0.51 9.52 7.82 87.66 0.69 10.20 16 8 O -0.59 -16.90 15.71 -3.05 -0.05 -16.95 16 9 C -0.09 -0.77 5.88 29.10 0.17 -0.60 16 10 C -0.17 -2.52 4.41 -19.69 -0.09 -2.61 16 11 C 0.15 2.48 11.01 84.70 0.93 3.41 16 12 N -0.54 -10.92 10.44 -200.05 -2.09 -13.01 16 13 C 0.28 5.26 12.28 180.88 2.22 7.48 16 14 N -0.54 -11.21 10.44 -200.04 -2.09 -13.30 16 15 C 0.15 2.56 11.01 84.70 0.93 3.49 16 16 C -0.15 -4.56 2.86 -15.69 -0.04 -4.61 16 17 H 0.09 2.92 5.76 -2.38 -0.01 2.91 16 18 C -0.09 -2.56 6.11 30.37 0.19 -2.37 16 19 C -0.12 -3.95 5.90 30.80 0.18 -3.77 16 20 C 0.14 5.59 4.50 85.84 0.39 5.98 16 21 N -0.59 -25.66 2.32 -689.93 -1.60 -27.25 16 22 C -0.24 -12.46 9.38 84.03 0.79 -11.67 16 23 H 0.07 3.91 5.06 -2.91 -0.01 3.90 16 24 C -0.01 -0.32 5.11 84.86 0.43 0.11 16 25 N -0.94 -56.15 13.97 21.65 0.30 -55.85 16 26 Si 0.89 44.20 27.35 68.60 1.88 46.07 16 27 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 28 H -0.31 -15.65 7.11 99.48 0.71 -14.95 16 29 H -0.24 -11.02 4.75 99.48 0.47 -10.55 16 30 C 0.12 4.31 3.08 42.86 0.13 4.45 16 31 H 0.05 1.67 8.01 -2.39 -0.02 1.66 16 32 H 0.05 1.86 5.50 -2.39 -0.01 1.84 16 33 H 0.08 1.53 7.72 -2.39 -0.02 1.51 16 34 H 0.06 1.65 5.82 -2.39 -0.01 1.64 16 35 H 0.06 1.41 8.05 -2.39 -0.02 1.39 16 36 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.42 5.00 7.27 -92.71 -0.67 4.33 16 39 H 0.14 0.50 8.10 -2.39 -0.02 0.48 16 40 H 0.14 0.36 8.10 -2.39 -0.02 0.34 16 41 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.22 2.72 8.06 -2.91 -0.02 2.69 16 43 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 44 H 0.05 1.59 8.06 -2.39 -0.02 1.57 16 45 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.04 1.82 7.25 -2.39 -0.02 1.80 16 49 H 0.02 0.86 6.42 -2.38 -0.02 0.84 16 50 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -74.00 386.87 2.15 -71.85 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.05 Total: 16.78 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 8.17 Total: 6.44 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -7.90 Total: -124.20 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.05 Total: -16.95 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.07 kcal Total: -74.00 2.15 -71.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087285323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.549 kcal (2) G-P(sol) polarization free energy of solvation -74.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds