Wall clock time and date at job start Wed Apr 1 2020 03:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 112.96890 * 2 1 4 4 C 1.53869 * 113.68955 * 131.48914 * 2 1 3 5 5 H 1.08997 * 113.63646 * 25.93324 * 4 2 1 6 6 N 1.46503 * 113.64027 * 255.04356 * 4 2 1 7 7 C 1.34772 * 120.00151 * 156.87160 * 6 4 2 8 8 O 1.21281 * 120.00318 * 359.73244 * 7 6 4 9 9 C 1.50703 * 120.00242 * 179.72415 * 7 6 4 10 10 C 1.50696 * 109.47558 * 180.02562 * 9 7 6 11 11 C 1.38592 * 120.80473 * 269.72855 * 10 9 7 12 12 N 1.32332 * 119.10532 * 179.71823 * 11 10 9 13 13 C 1.31789 * 120.81948 * 0.55893 * 12 11 10 14 14 N 1.31799 * 121.75342 * 359.71187 * 13 12 11 15 15 C 1.32328 * 120.81697 * 359.97438 * 14 13 12 16 16 C 1.54153 * 87.03506 * 140.48912 * 4 2 1 17 17 H 1.09003 * 114.24588 * 218.85256 * 16 4 2 18 18 C 1.53056 * 111.68847 * 88.06806 * 16 4 2 19 19 C 1.53020 * 109.40951 * 213.59398 * 18 16 4 20 20 C 1.52947 * 108.92971 * 64.65054 * 19 18 16 21 21 N 1.44285 * 109.52636 * 302.89293 * 20 19 18 22 22 C 1.36944 * 117.25862 * 218.96444 * 21 20 19 23 23 H 1.07998 * 119.99742 * 151.78967 * 22 21 20 24 24 C 1.38815 * 119.99837 * 331.78998 * 22 21 20 25 25 N 1.31617 * 119.99961 * 343.72364 * 24 22 21 26 26 Si 1.86795 * 119.99668 * 163.72183 * 24 22 21 27 27 H 1.48502 * 109.47597 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46939 * 120.00372 * 26 24 22 29 29 H 1.48500 * 109.47366 * 239.99917 * 26 24 22 30 30 C 1.45095 * 124.25561 * 39.47707 * 21 20 19 31 31 H 1.09006 * 112.25275 * 203.67023 * 30 21 20 32 32 H 1.09001 * 109.47422 * 308.01524 * 1 2 3 33 33 H 1.09003 * 109.47369 * 68.01493 * 1 2 3 34 34 H 1.09004 * 109.47202 * 188.01578 * 1 2 3 35 35 H 1.09004 * 109.47076 * 203.41450 * 3 2 1 36 36 H 1.08991 * 109.47637 * 323.41854 * 3 2 1 37 37 H 1.09001 * 109.46827 * 83.42482 * 3 2 1 38 38 H 0.97003 * 119.99590 * 336.60479 * 6 4 2 39 39 H 1.09001 * 109.46977 * 300.00906 * 9 7 6 40 40 H 1.09007 * 109.46720 * 60.00447 * 9 7 6 41 41 H 1.08004 * 120.44472 * 359.97438 * 11 10 9 42 42 H 1.07996 * 119.12846 * 179.68302 * 13 12 11 43 43 H 1.08001 * 120.45085 * 179.97438 * 15 14 13 44 44 H 1.09001 * 109.48280 * 333.57800 * 18 16 4 45 45 H 1.09004 * 109.48142 * 93.61572 * 18 16 4 46 46 H 1.09001 * 109.56188 * 184.47879 * 19 18 16 47 47 H 1.09001 * 109.56533 * 304.81451 * 19 18 16 48 48 H 1.09003 * 109.39921 * 62.77980 * 20 19 18 49 49 H 1.09003 * 109.40087 * 182.52651 * 20 19 18 50 50 H 0.96999 * 119.99700 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1270 1.4087 0.0000 4 6 2.1482 -0.9335 1.0555 5 1 1.5014 -1.7647 1.3362 6 7 2.7014 -0.2264 2.2132 7 6 2.8436 -0.8679 3.3898 8 8 2.5091 -2.0293 3.4917 9 6 3.4185 -0.1424 4.5791 10 6 3.4709 -1.0766 5.7604 11 6 2.4036 -1.1696 6.6396 12 7 2.4834 -2.0052 7.6627 13 6 3.5639 -2.7344 7.8562 14 7 4.6000 -2.6683 7.0442 15 6 4.5897 -1.8598 5.9966 16 6 3.2037 -1.3026 -0.0055 17 1 3.4859 -2.3555 -0.0089 18 6 4.3982 -0.3462 0.0282 19 6 4.9428 -0.1625 -1.3899 20 6 3.8780 0.5264 -2.2449 21 7 2.6652 -0.2550 -2.2269 22 6 1.9624 -0.3492 -3.3984 23 1 1.3547 -1.2201 -3.5950 24 6 2.0310 0.6747 -4.3332 25 7 2.4933 1.8560 -3.9826 26 14 1.4672 0.3758 -6.0888 27 1 0.9933 -1.0250 -6.2249 28 1 0.3583 1.3071 -6.4179 29 1 2.6011 0.6078 -7.0192 30 6 2.1462 -0.9304 -1.0523 31 1 1.4959 -1.7663 -1.3104 32 1 -0.3634 0.6329 0.8096 33 1 -0.3634 0.3847 -0.9529 34 1 -0.3634 -1.0177 0.1433 35 1 3.1371 1.3752 -0.4084 36 1 1.5091 2.0653 -0.6124 37 1 2.1604 1.7891 1.0209 38 1 2.9689 0.7025 2.1317 39 1 4.4256 0.2013 4.3430 40 1 2.7895 0.7145 4.8207 41 1 1.5171 -0.5713 6.4895 42 1 3.6018 -3.4037 8.7029 43 1 5.4421 -1.8100 5.3353 44 1 4.0803 0.6186 0.4234 45 1 5.1784 -0.7614 0.6662 46 1 5.8410 0.4543 -1.3589 47 1 5.1811 -1.1360 -1.8184 48 1 3.6754 1.5184 -1.8409 49 1 4.2408 0.6208 -3.2684 50 1 2.5416 2.5714 -4.6359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087285325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:12 Heat of formation + Delta-G solvation = 71.828068 kcal Electronic energy + Delta-G solvation = -31334.793202 eV Core-core repulsion = 27364.091262 eV Total energy + Delta-G solvation = -3970.701941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.35780 -40.94629 -38.97166 -35.39507 -33.96001 -33.90927 -33.18603 -32.86497 -30.38041 -30.02097 -28.59820 -26.96050 -25.52187 -24.83575 -24.75117 -23.36651 -22.42952 -21.26518 -20.09653 -19.41982 -17.92316 -17.85028 -17.70273 -17.02471 -16.95765 -15.89401 -15.24602 -15.04858 -14.92456 -14.61953 -14.41636 -14.06470 -13.89616 -13.84901 -13.76229 -13.34489 -13.26422 -12.76050 -12.54859 -12.43044 -12.33372 -11.99014 -11.63017 -11.48228 -11.21779 -11.18053 -11.04559 -11.03056 -10.90247 -10.75863 -10.46385 -10.25292 -10.14423 -10.02472 -9.87083 -9.67236 -9.49609 -9.46533 -9.44130 -9.12544 -8.63190 -8.38652 -6.66615 -5.81997 -3.28555 0.62604 0.86086 2.60368 3.19879 3.33123 3.42229 3.44128 3.63342 3.90575 3.98690 4.28437 4.36622 4.46092 4.49120 4.77978 4.94934 5.02609 5.05411 5.19297 5.24346 5.26308 5.29421 5.45080 5.58528 5.60861 5.64051 5.81150 5.89167 5.97208 6.06909 6.11409 6.12967 6.18170 6.23759 6.36401 6.42177 6.51609 6.53483 6.61263 6.68594 6.69895 6.73547 6.78561 6.93932 7.01760 7.16413 7.37620 7.61129 7.70302 7.81083 7.82986 8.25117 8.44371 9.23268 9.88641 10.28396 11.22317 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.002497 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.736889 B =11212.428620 C =11542.343729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.111 4.111 3 C -0.137 4.137 4 C 0.126 3.874 5 H 0.106 0.894 6 N -0.707 5.707 7 C 0.511 3.489 8 O -0.542 6.542 9 C -0.098 4.098 10 C -0.165 4.165 11 C 0.161 3.839 12 N -0.520 5.520 13 C 0.287 3.713 14 N -0.519 5.519 15 C 0.161 3.839 16 C -0.132 4.132 17 H 0.070 0.930 18 C -0.100 4.100 19 C -0.147 4.147 20 C 0.182 3.818 21 N -0.567 5.567 22 C -0.264 4.264 23 H 0.064 0.936 24 C 0.009 3.991 25 N -0.900 5.900 26 Si 0.899 3.101 27 H -0.278 1.278 28 H -0.291 1.291 29 H -0.289 1.289 30 C 0.190 3.810 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.028 0.972 38 H 0.401 0.599 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.165 0.835 42 H 0.195 0.805 43 H 0.166 0.834 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.038 0.962 49 H 0.066 0.934 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.483 -0.434 17.724 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.116 4.116 3 C -0.194 4.194 4 C 0.021 3.979 5 H 0.124 0.876 6 N -0.358 5.358 7 C 0.296 3.704 8 O -0.419 6.419 9 C -0.139 4.139 10 C -0.169 4.169 11 C -0.005 4.005 12 N -0.233 5.233 13 C -0.001 4.001 14 N -0.232 5.232 15 C -0.004 4.004 16 C -0.154 4.154 17 H 0.089 0.911 18 C -0.137 4.137 19 C -0.186 4.186 20 C 0.057 3.943 21 N -0.284 5.284 22 C -0.394 4.394 23 H 0.082 0.918 24 C -0.190 4.190 25 N -0.544 5.544 26 Si 0.729 3.271 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.216 1.216 30 C 0.079 3.921 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.238 0.762 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.182 0.818 42 H 0.211 0.789 43 H 0.183 0.817 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.084 0.916 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.319 -1.744 18.469 18.845 hybrid contribution -0.316 0.937 -1.720 1.984 sum 3.003 -0.807 16.749 17.035 Atomic orbital electron populations 1.21613 0.94889 1.00348 1.01444 1.22989 0.95152 0.96540 0.96871 1.22007 1.04274 0.94572 0.98508 1.22842 0.96184 0.96209 0.82687 0.87642 1.46102 1.63924 1.15661 1.10117 1.20373 0.78708 0.87301 0.83975 1.90725 1.49996 1.16846 1.84316 1.20571 1.04463 0.97862 0.91019 1.21085 0.97101 1.00622 0.98128 1.23081 0.96726 0.92573 0.88159 1.68418 1.26879 1.06958 1.21010 1.24954 0.84071 0.94242 0.96789 1.68427 1.29959 1.19873 1.04962 1.23094 0.96809 0.88052 0.92490 1.23290 0.95936 0.99078 0.97053 0.91125 1.21442 0.95770 0.99043 0.97455 1.22123 0.99340 1.01064 0.96078 1.20352 0.83463 0.92330 0.98197 1.42852 1.22452 1.57736 1.05349 1.19291 1.25456 1.00733 0.93946 0.91801 1.25016 1.00165 0.94641 0.99174 1.70069 1.50276 1.01032 1.32993 0.86286 0.77908 0.77670 0.85262 1.20301 1.21809 1.21620 1.21096 0.92243 0.93540 0.85184 0.90610 0.94191 0.91749 0.93565 0.88641 0.91817 0.95352 0.76214 0.87286 0.87353 0.81758 0.78873 0.81718 0.90953 0.93931 0.93110 0.92842 0.94456 0.91590 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.11 37.15 0.34 -1.68 16 2 C -0.11 -1.83 1.35 -153.86 -0.21 -2.04 16 3 C -0.14 -2.25 7.03 37.16 0.26 -1.99 16 4 C 0.13 1.87 3.59 -66.88 -0.24 1.63 16 5 H 0.11 1.71 7.38 -51.93 -0.38 1.33 16 6 N -0.71 -8.42 4.33 -52.79 -0.23 -8.64 16 7 C 0.51 6.10 7.82 -10.99 -0.09 6.01 16 8 O -0.54 -8.84 15.66 5.56 0.09 -8.76 16 9 C -0.10 -0.74 5.88 -29.04 -0.17 -0.91 16 10 C -0.16 -1.57 4.41 -104.36 -0.46 -2.03 16 11 C 0.16 1.61 11.01 -17.21 -0.19 1.42 16 12 N -0.52 -5.80 10.44 -14.58 -0.15 -5.95 16 13 C 0.29 2.97 12.29 -92.15 -1.13 1.83 16 14 N -0.52 -5.84 10.44 -14.58 -0.15 -5.99 16 15 C 0.16 1.64 11.01 -17.20 -0.19 1.45 16 16 C -0.13 -2.17 4.30 -89.79 -0.39 -2.56 16 17 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.10 -1.52 4.66 -26.69 -0.12 -1.65 16 19 C -0.15 -2.58 6.03 -26.75 -0.16 -2.75 16 20 C 0.18 3.94 3.93 -5.25 -0.02 3.92 16 21 N -0.57 -12.73 2.61 -167.98 -0.44 -13.17 16 22 C -0.26 -6.75 9.40 -15.05 -0.14 -6.89 16 23 H 0.06 1.65 7.86 -52.49 -0.41 1.23 16 24 C 0.01 0.24 4.78 -17.43 -0.08 0.15 16 25 N -0.90 -24.16 11.08 55.49 0.61 -23.55 16 26 Si 0.90 20.88 29.58 -169.99 -5.03 15.85 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 C 0.19 3.63 3.57 -68.29 -0.24 3.38 16 31 H 0.08 1.50 7.97 -51.93 -0.41 1.08 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.70 8.02 -51.93 -0.42 0.28 16 35 H 0.10 1.67 1.94 -51.93 -0.10 1.57 16 36 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 37 H 0.03 0.37 6.31 -51.93 -0.33 0.04 16 38 H 0.40 4.05 5.60 -40.82 -0.23 3.83 16 39 H 0.11 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.11 0.55 8.10 -51.93 -0.42 0.13 16 41 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.07 1.04 3.74 -51.93 -0.19 0.84 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.04 0.86 5.53 -51.93 -0.29 0.57 16 49 H 0.07 1.64 6.59 -51.93 -0.34 1.30 16 50 H 0.25 6.64 8.31 -40.82 -0.34 6.31 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -31.02 382.14 -10.08 -41.10 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.31 Total: 6.05 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -3.24 Total: -2.69 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.36 Total: -57.31 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.02 -10.08 -41.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087285325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.927 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds