Wall clock time and date at job start Wed Apr 1 2020 03:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 112.96890 * 2 1 4 4 C 1.53869 * 113.68955 * 131.48914 * 2 1 3 5 5 H 1.08997 * 113.63646 * 25.93324 * 4 2 1 6 6 N 1.46503 * 113.64027 * 255.04356 * 4 2 1 7 7 C 1.34772 * 120.00151 * 156.87160 * 6 4 2 8 8 O 1.21281 * 120.00318 * 359.73244 * 7 6 4 9 9 C 1.50703 * 120.00242 * 179.72415 * 7 6 4 10 10 C 1.50696 * 109.47558 * 180.02562 * 9 7 6 11 11 C 1.38592 * 120.80473 * 269.72855 * 10 9 7 12 12 N 1.32332 * 119.10532 * 179.71823 * 11 10 9 13 13 C 1.31789 * 120.81948 * 0.55893 * 12 11 10 14 14 N 1.31799 * 121.75342 * 359.71187 * 13 12 11 15 15 C 1.32328 * 120.81697 * 359.97438 * 14 13 12 16 16 C 1.54153 * 87.03506 * 140.48912 * 4 2 1 17 17 H 1.09003 * 114.24588 * 218.85256 * 16 4 2 18 18 C 1.53056 * 111.68847 * 88.06806 * 16 4 2 19 19 C 1.53020 * 109.40951 * 213.59398 * 18 16 4 20 20 C 1.52947 * 108.92971 * 64.65054 * 19 18 16 21 21 N 1.44285 * 109.52636 * 302.89293 * 20 19 18 22 22 C 1.36944 * 117.25862 * 218.96444 * 21 20 19 23 23 H 1.07998 * 119.99742 * 151.78967 * 22 21 20 24 24 C 1.38815 * 119.99837 * 331.78998 * 22 21 20 25 25 N 1.31617 * 119.99961 * 343.72364 * 24 22 21 26 26 Si 1.86795 * 119.99668 * 163.72183 * 24 22 21 27 27 H 1.48502 * 109.47597 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46939 * 120.00372 * 26 24 22 29 29 H 1.48500 * 109.47366 * 239.99917 * 26 24 22 30 30 C 1.45095 * 124.25561 * 39.47707 * 21 20 19 31 31 H 1.09006 * 112.25275 * 203.67023 * 30 21 20 32 32 H 1.09001 * 109.47422 * 308.01524 * 1 2 3 33 33 H 1.09003 * 109.47369 * 68.01493 * 1 2 3 34 34 H 1.09004 * 109.47202 * 188.01578 * 1 2 3 35 35 H 1.09004 * 109.47076 * 203.41450 * 3 2 1 36 36 H 1.08991 * 109.47637 * 323.41854 * 3 2 1 37 37 H 1.09001 * 109.46827 * 83.42482 * 3 2 1 38 38 H 0.97003 * 119.99590 * 336.60479 * 6 4 2 39 39 H 1.09001 * 109.46977 * 300.00906 * 9 7 6 40 40 H 1.09007 * 109.46720 * 60.00447 * 9 7 6 41 41 H 1.08004 * 120.44472 * 359.97438 * 11 10 9 42 42 H 1.07996 * 119.12846 * 179.68302 * 13 12 11 43 43 H 1.08001 * 120.45085 * 179.97438 * 15 14 13 44 44 H 1.09001 * 109.48280 * 333.57800 * 18 16 4 45 45 H 1.09004 * 109.48142 * 93.61572 * 18 16 4 46 46 H 1.09001 * 109.56188 * 184.47879 * 19 18 16 47 47 H 1.09001 * 109.56533 * 304.81451 * 19 18 16 48 48 H 1.09003 * 109.39921 * 62.77980 * 20 19 18 49 49 H 1.09003 * 109.40087 * 182.52651 * 20 19 18 50 50 H 0.96999 * 119.99700 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1270 1.4087 0.0000 4 6 2.1482 -0.9335 1.0555 5 1 1.5014 -1.7647 1.3362 6 7 2.7014 -0.2264 2.2132 7 6 2.8436 -0.8679 3.3898 8 8 2.5091 -2.0293 3.4917 9 6 3.4185 -0.1424 4.5791 10 6 3.4709 -1.0766 5.7604 11 6 2.4036 -1.1696 6.6396 12 7 2.4834 -2.0052 7.6627 13 6 3.5639 -2.7344 7.8562 14 7 4.6000 -2.6683 7.0442 15 6 4.5897 -1.8598 5.9966 16 6 3.2037 -1.3026 -0.0055 17 1 3.4859 -2.3555 -0.0089 18 6 4.3982 -0.3462 0.0282 19 6 4.9428 -0.1625 -1.3899 20 6 3.8780 0.5264 -2.2449 21 7 2.6652 -0.2550 -2.2269 22 6 1.9624 -0.3492 -3.3984 23 1 1.3547 -1.2201 -3.5950 24 6 2.0310 0.6747 -4.3332 25 7 2.4933 1.8560 -3.9826 26 14 1.4672 0.3758 -6.0888 27 1 0.9933 -1.0250 -6.2249 28 1 0.3583 1.3071 -6.4179 29 1 2.6011 0.6078 -7.0192 30 6 2.1462 -0.9304 -1.0523 31 1 1.4959 -1.7663 -1.3104 32 1 -0.3634 0.6329 0.8096 33 1 -0.3634 0.3847 -0.9529 34 1 -0.3634 -1.0177 0.1433 35 1 3.1371 1.3752 -0.4084 36 1 1.5091 2.0653 -0.6124 37 1 2.1604 1.7891 1.0209 38 1 2.9689 0.7025 2.1317 39 1 4.4256 0.2013 4.3430 40 1 2.7895 0.7145 4.8207 41 1 1.5171 -0.5713 6.4895 42 1 3.6018 -3.4037 8.7029 43 1 5.4421 -1.8100 5.3353 44 1 4.0803 0.6186 0.4234 45 1 5.1784 -0.7614 0.6662 46 1 5.8410 0.4543 -1.3589 47 1 5.1811 -1.1360 -1.8184 48 1 3.6754 1.5184 -1.8409 49 1 4.2408 0.6208 -3.2684 50 1 2.5416 2.5714 -4.6359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087285325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:10 Heat of formation + Delta-G solvation = 53.892007 kcal Electronic energy + Delta-G solvation = -31335.570968 eV Core-core repulsion = 27364.091262 eV Total energy + Delta-G solvation = -3971.479707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.40724 -41.94170 -40.02850 -36.97752 -34.72392 -34.63876 -34.46916 -34.31554 -32.13324 -31.43494 -29.36000 -28.30813 -27.16771 -26.14879 -25.54477 -24.43062 -23.85040 -22.56451 -21.21222 -20.77324 -19.12929 -18.71768 -18.57039 -18.53894 -18.01826 -17.13354 -16.63717 -16.38620 -16.06825 -15.76611 -15.46237 -15.38088 -15.12552 -14.76448 -14.62061 -14.49987 -14.46941 -14.22242 -13.97719 -13.77980 -13.47944 -13.12115 -13.01576 -12.89999 -12.80039 -12.74972 -12.49560 -12.41823 -12.06891 -11.94413 -11.90316 -11.79435 -11.52136 -11.41048 -11.17791 -10.99926 -10.94033 -10.67769 -10.29822 -10.27296 -10.19490 -9.78341 -8.50801 -7.78538 -5.26581 -0.08027 0.14760 1.44041 1.48384 1.56220 1.71156 2.27595 2.54366 2.87939 3.27523 3.31772 3.32452 3.58297 3.64670 3.70462 3.70957 3.82578 3.91216 3.95046 4.01346 4.10708 4.32473 4.44971 4.49246 4.52899 4.63012 4.65595 4.70463 4.72460 4.77748 4.84636 4.88517 4.96141 4.99032 5.07108 5.14183 5.15891 5.20541 5.33387 5.38889 5.43654 5.46868 5.59501 5.62879 5.64248 5.75085 5.78398 5.99335 6.04136 6.46944 6.67738 7.11330 7.27926 7.35146 8.08491 8.37342 9.21281 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.002497 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.736889 B =11212.428620 C =11542.343729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 C -0.130 4.130 4 C 0.149 3.851 5 H 0.095 0.905 6 N -0.698 5.698 7 C 0.514 3.486 8 O -0.587 6.587 9 C -0.087 4.087 10 C -0.167 4.167 11 C 0.148 3.852 12 N -0.541 5.541 13 C 0.276 3.724 14 N -0.541 5.541 15 C 0.148 3.852 16 C -0.127 4.127 17 H 0.065 0.935 18 C -0.091 4.091 19 C -0.139 4.139 20 C 0.191 3.809 21 N -0.578 5.578 22 C -0.269 4.269 23 H 0.053 0.947 24 C -0.036 4.036 25 N -0.921 5.921 26 Si 0.951 3.049 27 H -0.275 1.275 28 H -0.294 1.294 29 H -0.292 1.292 30 C 0.168 3.832 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.414 0.586 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.185 0.815 42 H 0.216 0.784 43 H 0.184 0.816 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.042 0.958 48 H 0.025 0.975 49 H 0.024 0.976 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.335 0.287 20.032 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.109 4.109 3 C -0.186 4.186 4 C 0.043 3.957 5 H 0.113 0.887 6 N -0.350 5.350 7 C 0.302 3.698 8 O -0.467 6.467 9 C -0.127 4.127 10 C -0.172 4.172 11 C -0.017 4.017 12 N -0.254 5.254 13 C -0.011 4.011 14 N -0.254 5.254 15 C -0.017 4.017 16 C -0.149 4.149 17 H 0.083 0.917 18 C -0.128 4.128 19 C -0.177 4.177 20 C 0.066 3.934 21 N -0.296 5.296 22 C -0.400 4.400 23 H 0.071 0.929 24 C -0.232 4.232 25 N -0.566 5.566 26 Si 0.781 3.219 27 H -0.200 1.200 28 H -0.221 1.221 29 H -0.218 1.218 30 C 0.059 3.941 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.253 0.747 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.202 0.798 42 H 0.232 0.768 43 H 0.201 0.799 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.061 0.939 48 H 0.043 0.957 49 H 0.043 0.957 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.178 -1.015 20.805 21.244 hybrid contribution -0.614 0.638 -2.430 2.587 sum 3.564 -0.376 18.375 18.721 Atomic orbital electron populations 1.21563 0.94733 1.01040 1.00599 1.22819 0.95314 0.96469 0.96254 1.21908 1.02731 0.93686 1.00309 1.22299 0.94924 0.95244 0.83227 0.88728 1.45928 1.63712 1.16064 1.09335 1.21069 0.77459 0.86740 0.84537 1.90727 1.51878 1.19152 1.84992 1.20634 1.06718 0.97571 0.87782 1.21266 0.96566 1.00744 0.98589 1.23548 0.97674 0.92497 0.88007 1.68453 1.27328 1.07737 1.21919 1.25435 0.83836 0.94452 0.97358 1.68459 1.30502 1.20722 1.05766 1.23545 0.97867 0.87831 0.92479 1.23243 0.96231 0.99193 0.96191 0.91691 1.21410 0.95708 0.99572 0.96148 1.21993 0.98761 1.00261 0.96721 1.20124 0.84280 0.92390 0.96643 1.42962 1.22812 1.58109 1.05732 1.19466 1.24978 1.00099 0.95493 0.92890 1.25555 1.01147 0.94675 1.01864 1.70180 1.51613 1.01391 1.33415 0.85457 0.77136 0.77386 0.81918 1.19972 1.22128 1.21850 1.21317 0.93918 0.93704 0.85205 0.92321 0.92049 0.94715 0.92931 0.89563 0.95267 0.91154 0.74698 0.83975 0.83961 0.79779 0.76781 0.79868 0.89468 0.91306 0.90877 0.93930 0.95692 0.95699 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.85 9.11 71.98 0.66 -3.20 16 2 C -0.10 -3.32 1.35 -51.76 -0.07 -3.39 16 3 C -0.13 -4.03 7.03 71.98 0.51 -3.53 16 4 C 0.15 4.10 3.59 45.67 0.16 4.26 16 5 H 0.09 2.91 7.38 -2.39 -0.02 2.89 16 6 N -0.70 -13.74 4.33 -439.32 -1.90 -15.64 16 7 C 0.51 10.22 7.82 87.66 0.69 10.90 16 8 O -0.59 -17.69 15.66 -3.03 -0.05 -17.74 16 9 C -0.09 -0.87 5.88 29.10 0.17 -0.70 16 10 C -0.17 -2.65 4.41 -19.69 -0.09 -2.73 16 11 C 0.15 2.60 11.01 84.70 0.93 3.53 16 12 N -0.54 -11.27 10.44 -200.05 -2.09 -13.35 16 13 C 0.28 5.38 12.29 180.88 2.22 7.60 16 14 N -0.54 -11.36 10.44 -200.05 -2.09 -13.45 16 15 C 0.15 2.63 11.01 84.70 0.93 3.57 16 16 C -0.13 -3.97 4.30 -10.25 -0.04 -4.02 16 17 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 18 C -0.09 -2.51 4.66 30.62 0.14 -2.36 16 19 C -0.14 -4.68 6.03 30.58 0.18 -4.49 16 20 C 0.19 8.39 3.93 86.77 0.34 8.73 16 21 N -0.58 -26.58 2.61 -685.38 -1.79 -28.37 16 22 C -0.27 -14.24 9.40 84.03 0.79 -13.45 16 23 H 0.05 2.85 7.86 -2.91 -0.02 2.82 16 24 C -0.04 -1.92 4.78 84.86 0.41 -1.52 16 25 N -0.92 -50.99 11.08 21.65 0.24 -50.75 16 26 Si 0.95 44.14 29.58 68.60 2.03 46.17 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 28 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 29 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 30 C 0.17 6.44 3.57 45.51 0.16 6.60 16 31 H 0.06 2.40 7.97 -2.38 -0.02 2.38 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.56 8.02 -2.39 -0.02 1.54 16 35 H 0.09 2.88 1.94 -2.39 0.00 2.87 16 36 H 0.03 1.10 8.04 -2.39 -0.02 1.08 16 37 H 0.07 1.55 6.31 -2.39 -0.02 1.54 16 38 H 0.41 6.14 5.60 -92.71 -0.52 5.62 16 39 H 0.14 0.60 8.10 -2.39 -0.02 0.58 16 40 H 0.14 0.57 8.10 -2.38 -0.02 0.55 16 41 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.22 2.79 8.06 -2.91 -0.02 2.77 16 43 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 44 H 0.09 2.16 3.74 -2.39 -0.01 2.15 16 45 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.03 1.17 5.53 -2.39 -0.01 1.16 16 49 H 0.02 1.27 6.59 -2.39 -0.02 1.26 16 50 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -71.18 382.14 2.90 -68.28 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.45 Total: 19.05 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 8.10 Total: 5.80 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -7.63 Total: -121.57 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.05 Total: -17.74 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -71.18 2.90 -68.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087285325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.175 kcal (2) G-P(sol) polarization free energy of solvation -71.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds