Wall clock time and date at job start Wed Apr 1 2020 03:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38041 * 126.29363 * 2 1 4 4 C 1.47433 * 126.41249 * 0.02571 * 3 2 1 5 5 O 1.21603 * 120.00055 * 332.62738 * 4 3 2 6 6 N 1.34774 * 120.00046 * 152.62963 * 4 3 2 7 7 C 1.48973 * 125.82542 * 184.98358 * 6 4 3 8 8 C 1.52203 * 105.53998 * 186.89847 * 7 6 4 9 9 H 1.08993 * 110.78784 * 85.93289 * 8 7 6 10 10 C 1.56496 * 99.88379 * 329.27647 * 8 7 6 11 11 H 1.09001 * 100.31062 * 299.30441 * 10 8 7 12 12 C 1.47761 * 102.65991 * 44.60347 * 10 8 7 13 13 C 1.48802 * 108.24421 * 190.31053 * 10 8 7 14 14 H 1.08995 * 113.94110 * 208.28295 * 13 10 8 15 15 C 1.56563 * 103.73044 * 83.43669 * 13 10 8 16 16 C 1.53994 * 106.00001 * 324.34528 * 15 13 10 17 17 C 1.52309 * 119.92029 * 216.90092 * 8 7 6 18 18 H 1.09006 * 112.63591 * 315.97591 * 17 8 7 19 19 C 1.56084 * 103.54363 * 192.94234 * 17 8 7 20 20 N 1.48794 * 104.92252 * 319.96951 * 19 17 8 21 21 C 1.36933 * 122.71390 * 147.59595 * 20 19 17 22 22 H 1.07995 * 119.99825 * 199.93360 * 21 20 19 23 23 C 1.38812 * 119.99724 * 20.21433 * 21 20 19 24 24 N 1.31616 * 120.00099 * 9.53565 * 23 21 20 25 25 Si 1.86803 * 119.99725 * 189.53919 * 23 21 20 26 26 H 1.48503 * 109.46945 * 59.99916 * 25 23 21 27 27 H 1.48500 * 109.46782 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47167 * 299.99939 * 25 23 21 29 29 C 1.41288 * 107.17330 * 179.76257 * 3 2 1 30 30 N 1.30448 * 108.02584 * 0.24160 * 29 3 2 31 31 N 1.34261 * 126.28991 * 180.18205 * 2 1 3 32 32 C 1.46501 * 125.75657 * 359.95723 * 31 2 1 33 33 H 1.08995 * 109.47677 * 89.99963 * 1 2 3 34 34 H 1.09008 * 109.46836 * 210.00161 * 1 2 3 35 35 H 1.09002 * 109.47078 * 329.99526 * 1 2 3 36 36 H 1.08995 * 110.23150 * 67.87448 * 7 6 4 37 37 H 1.08997 * 110.22763 * 305.91399 * 7 6 4 38 38 H 1.09003 * 111.07468 * 200.37575 * 12 10 8 39 39 H 1.09001 * 110.02320 * 77.36406 * 12 10 8 40 40 H 1.09004 * 110.14202 * 83.46871 * 15 13 10 41 41 H 1.09007 * 110.13950 * 205.23168 * 15 13 10 42 42 H 1.08997 * 109.46807 * 84.66635 * 16 15 13 43 43 H 1.08999 * 109.47074 * 204.66368 * 16 15 13 44 44 H 1.08993 * 110.46243 * 201.08438 * 19 17 8 45 45 H 1.09002 * 110.30754 * 78.76405 * 19 17 8 46 46 H 0.96998 * 119.99781 * 180.02562 * 24 23 21 47 47 H 1.07999 * 125.99255 * 180.23933 * 29 3 2 48 48 H 1.08991 * 109.47143 * 270.30521 * 32 31 2 49 49 H 1.09004 * 109.47003 * 30.30929 * 32 31 2 50 50 H 1.08999 * 109.47174 * 150.30931 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.8119 2.8229 -0.4832 6 7 2.6753 3.4717 0.5371 7 6 2.3200 4.9091 0.7013 8 6 3.5918 5.5906 1.1859 9 1 4.2216 5.8778 0.3440 10 6 4.2414 4.4113 1.9835 11 1 3.4708 4.2355 2.7341 12 6 4.0606 3.2641 1.0699 13 6 5.3933 4.9502 2.7561 14 1 6.1815 4.2206 2.9418 15 6 4.7331 5.5281 4.0528 16 6 3.3756 6.1088 3.6154 17 6 3.5079 6.7183 2.2062 18 1 2.7126 7.4291 1.9815 19 6 4.9351 7.3493 2.1719 20 7 5.8634 6.1914 2.0642 21 6 7.0542 6.2577 1.3915 22 1 7.5384 5.3510 1.0602 23 6 7.6419 7.4900 1.1406 24 7 7.1597 8.5763 1.7059 25 14 9.1172 7.6063 0.0006 26 1 8.7423 7.1066 -1.3466 27 1 9.5538 9.0220 -0.1009 28 1 10.2277 6.7829 0.5426 29 6 3.6590 0.6498 0.0056 30 7 3.6341 -0.6544 0.0035 31 7 2.3016 -1.0822 -0.0034 32 6 1.8500 -2.4758 -0.0070 33 1 -0.3634 0.0000 -1.0276 34 1 -0.3633 -0.8901 0.5139 35 1 -0.3633 0.8900 0.5139 36 1 1.5276 5.0193 1.4416 37 1 2.0064 5.3312 -0.2534 38 1 4.1318 2.3191 1.6085 39 1 4.7959 3.3073 0.2664 40 1 4.5834 4.7336 4.7839 41 1 5.3594 6.3146 4.4743 42 1 2.6291 5.3148 3.5992 43 1 3.0679 6.8827 4.3186 44 1 5.1281 7.9051 3.0893 45 1 5.0401 8.0004 1.3041 46 1 7.5702 9.4374 1.5302 47 1 4.5449 1.2675 0.0107 48 1 1.7335 -2.8226 1.0197 49 1 0.8937 -2.5466 -0.5253 50 1 2.5870 -3.0953 -0.5181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087338984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:41 Heat of formation + Delta-G solvation = 118.400612 kcal Electronic energy + Delta-G solvation = -31685.208947 eV Core-core repulsion = 27716.526544 eV Total energy + Delta-G solvation = -3968.682404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.63640 -40.93064 -38.56487 -35.92675 -33.89039 -33.12832 -32.15030 -31.17493 -30.27247 -29.82848 -28.10093 -27.21803 -26.81020 -25.38592 -24.03858 -22.05348 -21.78319 -21.11275 -20.30812 -20.24560 -18.91197 -17.37160 -17.19998 -16.74118 -16.17874 -15.91224 -15.82986 -14.97424 -14.79497 -14.77101 -14.32022 -14.14421 -13.99812 -13.49113 -13.33210 -13.18736 -13.01259 -12.79471 -12.61908 -12.47270 -12.44497 -12.30247 -12.11793 -11.64282 -11.29132 -11.15831 -11.03189 -10.98992 -10.86891 -10.70830 -10.58738 -10.33859 -10.16435 -10.05140 -9.72907 -9.60716 -9.55477 -9.14843 -8.93770 -8.74292 -8.51043 -8.33520 -6.75175 -5.73379 -3.10772 1.42632 2.15501 2.16573 3.11794 3.40850 3.45553 3.46608 3.46991 4.22596 4.35954 4.47695 4.63497 4.73267 4.76642 4.89662 4.90223 5.01298 5.10717 5.27383 5.30378 5.37075 5.38575 5.50181 5.55113 5.57543 5.62926 5.69625 5.74686 5.79095 5.85931 5.90034 5.98865 6.20012 6.22220 6.24591 6.28186 6.39565 6.47971 6.49223 6.55399 6.64341 6.65989 6.72858 6.95107 7.04722 7.12596 7.42382 7.44419 7.64406 7.76432 7.81389 8.31427 8.41774 9.19922 9.81251 10.45040 11.36894 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.003151 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.244070 B = 8884.948819 C = 9698.021260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.146 3.854 3 C -0.286 4.286 4 C 0.609 3.391 5 O -0.556 6.556 6 N -0.616 5.616 7 C 0.121 3.879 8 C -0.086 4.086 9 H 0.094 0.906 10 C -0.146 4.146 11 H 0.057 0.943 12 C 0.128 3.872 13 C 0.193 3.807 14 H 0.079 0.921 15 C -0.129 4.129 16 C -0.111 4.111 17 C -0.109 4.109 18 H 0.074 0.926 19 C 0.194 3.806 20 N -0.596 5.596 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.002 4.002 24 N -0.915 5.915 25 Si 0.904 3.096 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.285 1.285 29 C 0.083 3.917 30 N -0.300 5.300 31 N -0.367 5.367 32 C 0.098 3.902 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.253 0.747 47 H 0.195 0.805 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.594 -16.939 0.521 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.015 3.985 3 C -0.300 4.300 4 C 0.398 3.602 5 O -0.436 6.436 6 N -0.349 5.349 7 C 0.000 4.000 8 C -0.105 4.105 9 H 0.112 0.888 10 C -0.167 4.167 11 H 0.075 0.925 12 C 0.006 3.994 13 C 0.086 3.914 14 H 0.097 0.903 15 C -0.168 4.168 16 C -0.148 4.148 17 C -0.129 4.129 18 H 0.092 0.908 19 C 0.069 3.931 20 N -0.320 5.320 21 C -0.368 4.368 22 H 0.087 0.913 23 C -0.199 4.199 24 N -0.561 5.561 25 Si 0.734 3.266 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.211 1.211 29 C -0.104 4.104 30 N -0.119 5.119 31 N -0.147 5.147 32 C -0.044 4.044 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.212 0.788 48 H 0.096 0.904 49 H 0.107 0.893 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.447 -17.873 0.202 21.781 hybrid contribution 0.440 0.813 -0.563 1.082 sum -12.007 -17.060 -0.361 20.865 Atomic orbital electron populations 1.20545 0.86261 1.04061 1.04121 1.21409 0.94714 0.86312 0.96114 1.19960 0.93012 0.93391 1.23670 1.16813 0.83121 0.83137 0.77099 1.90731 1.23137 1.82567 1.47144 1.49502 1.16260 1.08790 1.60367 1.21742 0.97937 0.79609 1.00736 1.22062 0.93970 0.95460 0.99042 0.88766 1.21785 1.02030 0.94406 0.98501 0.92524 1.20968 0.82557 0.98475 0.97353 1.20578 0.92087 0.89604 0.89167 0.90289 1.23022 0.96365 0.99914 0.97449 1.21981 0.97070 0.98968 0.96774 1.22400 1.01211 0.96599 0.92708 0.90774 1.21709 0.82363 0.88255 1.00742 1.45510 1.19350 1.06889 1.60291 1.19115 0.97204 0.92597 1.27879 0.91301 1.24921 0.98369 0.96256 1.00353 1.69936 1.42749 0.98105 1.45270 0.86342 0.82762 0.76565 0.80909 1.21220 1.21792 1.21128 1.24371 0.97623 0.91751 0.96659 1.77213 0.95747 1.13389 1.25590 1.48333 1.04194 1.06183 1.56005 1.21921 1.01228 0.77539 1.03672 0.89368 0.91191 0.88606 0.92054 0.91427 0.90625 0.91133 0.93306 0.90691 0.93110 0.92886 0.94820 0.91240 0.93707 0.78841 0.90410 0.89297 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 9.23 36.00 0.33 -0.48 16 2 C 0.15 1.74 7.00 -81.60 -0.57 1.17 16 3 C -0.29 -4.04 5.85 -105.07 -0.61 -4.66 16 4 C 0.61 9.88 7.69 -12.52 -0.10 9.78 16 5 O -0.56 -10.27 16.04 5.28 0.08 -10.19 16 6 N -0.62 -9.63 3.42 -173.55 -0.59 -10.23 16 7 C 0.12 1.93 6.50 -3.08 -0.02 1.91 16 8 C -0.09 -1.48 2.43 -89.50 -0.22 -1.69 16 9 H 0.09 1.91 7.47 -51.93 -0.39 1.52 16 10 C -0.15 -2.36 2.69 -93.33 -0.25 -2.61 16 11 H 0.06 0.90 4.42 -51.93 -0.23 0.67 16 12 C 0.13 1.86 4.96 -4.70 -0.02 1.84 16 13 C 0.19 3.57 4.50 -66.30 -0.30 3.27 16 14 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 15 C -0.13 -2.18 5.54 -24.29 -0.13 -2.32 16 16 C -0.11 -1.75 5.31 -25.64 -0.14 -1.89 16 17 C -0.11 -1.91 3.98 -88.75 -0.35 -2.26 16 18 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 19 C 0.19 4.30 3.96 -1.12 0.00 4.29 16 20 N -0.60 -13.57 2.21 -159.61 -0.35 -13.93 16 21 C -0.24 -6.15 10.01 -15.06 -0.15 -6.30 16 22 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 23 C 0.00 -0.04 5.26 -17.43 -0.09 -0.13 16 24 N -0.91 -25.62 10.78 55.49 0.60 -25.02 16 25 Si 0.90 21.40 29.57 -169.99 -5.03 16.37 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 C 0.08 1.10 10.09 -16.98 -0.17 0.93 16 30 N -0.30 -3.98 12.50 30.86 0.39 -3.60 16 31 N -0.37 -4.02 3.98 -63.34 -0.25 -4.27 16 32 C 0.10 0.57 11.06 59.85 0.66 1.23 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.41 7.71 -51.92 -0.40 0.01 16 35 H 0.10 1.01 7.30 -51.93 -0.38 0.63 16 36 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 0.98 6.42 -51.93 -0.33 0.65 16 39 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.45 7.34 -51.93 -0.38 1.07 16 42 H 0.05 0.75 6.58 -51.93 -0.34 0.41 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.82 7.25 -51.93 -0.38 0.44 16 45 H 0.07 1.75 6.91 -51.93 -0.36 1.39 16 46 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.20 2.27 5.89 -52.49 -0.31 1.97 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.09 0.31 7.64 -51.93 -0.40 -0.08 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 377.92 15.07 5.70 5.70 Total: -1.00 -31.85 377.92 -9.25 -41.10 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.65 Total: 1.99 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -2.14 Total: 2.08 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.21 Total: -57.04 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.85 -9.25 -41.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087338984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.499 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds